NO11G01560.2, NO11G01560.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01560.2
Unique NameNO11G01560.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2189
Alignment locationchr11:520914..523511 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:520914..523511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01560.2 vs.
Match: XP_008607893.1 (hypothetical protein SDRG_04022 [Saprolegnia diclina VS20]; EQC38301.1 hypothetical protein SDRG_04022 [Saprolegnia diclina VS20])

HSP 1 Score: 97.1 bits (240), Expect = 1.600e-16
Identity = 62/166 (37.35%), Postives = 93/166 (56.02%), Query Frame = 0 
Query:   14 LFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRFNNSRR--SQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFLTGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSLHPRLSIERYFNVLSLVFLGSCCAFYYV 178
            L+ RT PE   +   ++ A Q + IFP L+M     FNN ++  S    IW +L  G+ V +LLS +W   +V   H HS  LL L F  G V S+T VV+ P++AT P  +TSA + G GLSG+   +L +  D G+ H  +++  YF   ++VFL +  AF ++
Sbjct:   69 LYQRT-PEKAAISAYLIVAIQASNIFPALYMV----FNNDQQLFSIRTAIWGLLSMGIVVCVLLSIFWDQTSVFFGHEHSTALLVLVFFGGMVSSTTSVVYYPFVATFPPLFTSALSTGEGLSGVIAGVLGIIQDPGATHMHITVGGYFFYGAVVFLVALLAFVFL 229
The following BLAST results are available for this feature:
BLAST of NO11G01560.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008607893.11.600e-1637.35hypothetical protein SDRG_04022 [Saprolegnia dicli... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01560NO11G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01560.2NO11G01560.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01560.2.cds1NO11G01560.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01560.2.cds2NO11G01560.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01560.2.cds3NO11G01560.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01560.2.cds4NO11G01560.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01560.2 ID=NO11G01560.2|Name=NO11G01560.2|organism=Nannochloropsis oceanica|type=mRNA|length=2189bp
TCTTCTACTTGCATGTTCTTTCGAGACCTCGACAACACACTATGTATCCA
AGCCCAAAACTTCGCAAAGGAGCATCACAAGCTGCAGCATAAGAAGATAC
TAACCGCGAGAAGGAGCGAGACGAGAAGGAGAAGCGGGCCGGTTGCAATA
TAAGAGAGGCTCCGTCATCCATATGTGCGCTCGACGCGCACCTTCTGTGG
TTCATTAAAAGAGACTCCCGTAGCGGGCATCCAATCAATAAGAGTGCAGT
GAAAGTACATCGTTTCCAAAACATTTGTTGATGTTCCCGACTCTCTACCA
CCACGCACAGTGCCTGGTCAAGATGGAAAGCTCGAAGACATCTTGCAGCG
CAGGCGGCAGGGACCAACGACACATCCACTTGGCCTTGGCTGCGTGGGGC
TTTTCATCGTGGATCTTATTCAATGGTACGTCGTCAATGGCAGGAGGAGA
TGTGAAGTCTTAATATTATCGTCGATGGGACAGTTGTTTGTCTTGGTGTG
AGAAATGCCCGCTGTCCGCTTGGCTACCACCGAATATCAATGCTCTTTCC
GAAAACAGGCTTGTGGGGCCAGTTGCCGCTCTTTATCCGCACATTGCCGG
AGGGCAACAAACTGGGAGTTCTCATTTTGGCTGCAGAGCAGCTTGCCTAC
ATCTTTCCATTACTGTTCATGTACAAGAAACGCCGTTTCAACAATAGCCG
CCGTTCCCAAGAGATGGACATCTGGATCGTCCTTCTCTCCGGCCTGGCCG
TCTCTCTTCTCCTCTCCCGCTACTGGCACGCGCAAGCCGTGATTGACAAG
CACCTACACAGTATCGGCCTCCTGAGCCTCGCCTTTCTCACAGGTGCGGT
GTGCAGTAGCACCGGCGTCGTCTTCACCCCCTACCTTGCAACTCTTCCCA
AGAGCTACACGTCAGCCCATACAGCAGGTGCGGGTTTGAGCGGCTTGGCG
GTAGCCCTGTTGACTCTTGCCGCAGACGCAGGCTCGCTTCACCCGAGGTT
GAGCATCGAGAGGTACTTTAATGTGCTGTCCCTGGTATTCCTGGGGAGTT
GTTGCGCATTTTATTATGTCCGGACGCATATCAACATGGAGGAAATGTAC
GAAGCGATCGGCCATGCTTCCTCTTCCTCCCCCTCTCCGTCCATATCCTC
GCCAAGGCCAACAGCGGCAGCGGCAACGGCGGCGGCTGCGCAGGAGAATG
GAGAGGGAGGAGGAGGGGGAGGGGGGGACTATGGGTCCCTTTGTGATACC
CAGCATCACGGACACAACGACGACCAACCGCTCATTGCCCGTGTAGTCGT
CGACGATGACAGAGTCGCTGCGGCGGCAGCAACAGGAAGAGCGACCGGCG
AATCATCTCGAACGAAAGAGTCATACGCAGCAGTCTTTACCTTGCAATGC
CTGCTTTCTGCCCTTGCGTATGGCATGGTTCCCTCCATCCTCCCTCTTGC
CTGCAGCGGCTATCGCGACCCTTCCCGCACTTTGATGCTCTCCACTGTTG
GTTTTATGTGCGCTGATCCCTTGGGAAAGCTGGCCACAAGCTTCTTACCC
ACCGGGCGGATTTTTGGACTGGGGCTCTTCACGATGGCGGTGGCGGGGTG
GTTGCTTTATTGTGCCGTGCGATCGCCGAAGCCGCCGTTAAGTGAATTGC
CTTTTGGGGGATGGGTGGTGATAGTGGCGAATTCCGTGTTCAGTTTCGCA
TTTTCTTTTACGAGCATTTCGATTTTCTTTGACCGGCGAAGGAAATTGGA
GAAGGAGGGAGAGGAGGAAGAAGCCACGAAGGCCGCAGCTGCTGTTTCCG
GTGCGGGGGCAAGGGACGGGAGGGAGGTAGGAGAAGGAGGAGAGAAGAGA
GGAGGTGAGGGTGCGTATGAGTGGTTTGCGTGGTCGGCGTTTATGATTCA
AACGGGGGCCTTTTTGGGAACTGCCGTGTCTTTAGTAGTTGTGTTGATGC
TGTCCTGACGGGAAAGATAATCGAAGTGGAATTGAGATTTGAGTGTACGT
ATGTGTGGATAAATGGATGTATGTACATGTGAAGGACTCAGAGGTCGCAG
TCCTTGGCGTTAGTAGTAGTTGTTGTTGGAGTAGGGGGTAAGCAATAGAT
TCTCGCAACACTTTTCCTTGGGAAAAAAGAGAAGACGTGGCGTTTCCTGT
GCGTGGATCCAACAAGATGAAAAAAGGTTGAATGGTGTA
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protein sequence of NO11G01560.2

>NO11G01560.2-protein ID=NO11G01560.2-protein|Name=NO11G01560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MLFPKTGLWGQLPLFIRTLPEGNKLGVLILAAEQLAYIFPLLFMYKKRRF
NNSRRSQEMDIWIVLLSGLAVSLLLSRYWHAQAVIDKHLHSIGLLSLAFL
TGAVCSSTGVVFTPYLATLPKSYTSAHTAGAGLSGLAVALLTLAADAGSL
HPRLSIERYFNVLSLVFLGSCCAFYYVRTHINMEEMYEAIGHASSSSPSP
SISSPRPTAAAATAAAAQENGEGGGGGGGDYGSLCDTQHHGHNDDQPLIA
RVVVDDDRVAAAAATGRATGESSRTKESYAAVFTLQCLLSALAYGMVPSI
LPLACSGYRDPSRTLMLSTVGFMCADPLGKLATSFLPTGRIFGLGLFTMA
VAGWLLYCAVRSPKPPLSELPFGGWVVIVANSVFSFAFSFTSISIFFDRR
RKLEKEGEEEEATKAAAAVSGAGARDGREVGEGGEKRGGEGAYEWFAWSA
FMIQTGAFLGTAVSLVVVLMLS*
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mRNA from alignment at chr11:520914..523511-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01560.2 ID=NO11G01560.2|Name=NO11G01560.2|organism=Nannochloropsis oceanica|type=mRNA|length=2598bp|location=Sequence derived from alignment at chr11:520914..523511- (Nannochloropsis oceanica)
TCTTCTACTTGCATGTTCTTTCGAGACCTCGACAACACACTATGTATCCA
AGCCCAAAACTTCGCAAAGGAGCATCACAAGCTGCAGCATAAGAAGATAC
TAACCGCGAGAAGGAGCGAGACGAGAAGGAGAAGCGGGCCGGTTGCAATA
TAAGAGAGGCTCCGTCATCCATATGTGCGCTCGACGCGCACCTTCTGTGG
TTCATTAAAAGAGACTCCCGTAGCGGGCATCCAATCAATAAGAGTGCAGT
GAAAGTACATCGTTTCCAAAACATTTGTTGATGTTCCCGACTCTCTACCA
CCACGCACAGTGCCTGGTCAAGATGGAAAGCTCGAAGACATCTTGCAGCG
CAGGCGGCAGGGACCAACGACACATCCACTTGGCCTTGGCTGCGTGGGGC
TTTTCATCGTGGATCTTATTCAATGGTACGTCGTCAATGGCAGGAGGAGA
TGTGAAGTCTTAATATTATCGTCGATGGGACAGTTGTTTGTCTTGGTGTG
AGAAATGCCCGCTGTCCGCTTGGCTACCACCGAATATCAATGCTCTTTCC
GAAAACAGGCTTGTGGGGCCAGTTGCCGCTCTTTATCCGCACATTGCCGG
AGGTGAGCAGTAGGGAGGATACTGCAGAGGGGAATGACAGGCTGCTCGAG
AAGGAAGCGTAATTATCTACGTGCCGATATCATCACCACCTCTTCTTATC
TAAACCTTCACATCTACAGGGCAACAAACTGGGAGTTCTCATTTTGGCTG
CAGAGCAGCTTGCCTACATCTTTCCATTACTGTTCATGTACAAGAAACGC
CGTTTCAACAATAGCCGCCGTTCCCAAGAGGTAAGAATGAGGTGATGATA
TTACAATCAAACAGGGGAAGCTTTGACAACTTAGAAGATTAAATAAGCGA
ACAAGAGGGACAATCATGCTCAGCTGATATCCCCCTCCCTCTGAGGCTCA
CATGCGTACCCTATAATCTTATTGTCGCCCTTTCCTTTTTCCCCATTCAC
CCGCAGATGGACATCTGGATCGTCCTTCTCTCCGGCCTGGCCGTCTCTCT
TCTCCTCTCCCGCTACTGGCACGCGCAAGCCGTGATTGACAAGCACCTAC
ACAGTATCGGCCTCCTGAGCCTCGCCTTTCTCACAGGTGCGGTGTGCAGT
AGCACCGGCGTCGTCTTCACCCCCTACCTTGCAACTCTTCCCAAGAGCTA
CACGTCAGCCCATGTACGCAAGGCGGGAAGGAGGGAGAGGAGAAAATGGA
GGCAAGAGCTTCATAAGTTTTTGTACTCATCCCCCCCCCCCGTGCACTCA
TTTCATCATACCTTCGTTGTCAAATACAGACAGCAGGTGCGGGTTTGAGC
GGCTTGGCGGTAGCCCTGTTGACTCTTGCCGCAGACGCAGGCTCGCTTCA
CCCGAGGTTGAGCATCGAGAGGTACTTTAATGTGCTGTCCCTGGTATTCC
TGGGGAGTTGTTGCGCATTTTATTATGTCCGGACGCATATCAACATGGAG
GAAATGTACGAAGCGATCGGCCATGCTTCCTCTTCCTCCCCCTCTCCGTC
CATATCCTCGCCAAGGCCAACAGCGGCAGCGGCAACGGCGGCGGCTGCGC
AGGAGAATGGAGAGGGAGGAGGAGGGGGAGGGGGGGACTATGGGTCCCTT
TGTGATACCCAGCATCACGGACACAACGACGACCAACCGCTCATTGCCCG
TGTAGTCGTCGACGATGACAGAGTCGCTGCGGCGGCAGCAACAGGAAGAG
CGACCGGCGAATCATCTCGAACGAAAGAGTCATACGCAGCAGTCTTTACC
TTGCAATGCCTGCTTTCTGCCCTTGCGTATGGCATGGTTCCCTCCATCCT
CCCTCTTGCCTGCAGCGGCTATCGCGACCCTTCCCGCACTTTGATGCTCT
CCACTGTTGGTTTTATGTGCGCTGATCCCTTGGGAAAGCTGGCCACAAGC
TTCTTACCCACCGGGCGGATTTTTGGACTGGGGCTCTTCACGATGGCGGT
GGCGGGGTGGTTGCTTTATTGTGCCGTGCGATCGCCGAAGCCGCCGTTAA
GTGAATTGCCTTTTGGGGGATGGGTGGTGATAGTGGCGAATTCCGTGTTC
AGTTTCGCATTTTCTTTTACGAGCATTTCGATTTTCTTTGACCGGCGAAG
GAAATTGGAGAAGGAGGGAGAGGAGGAAGAAGCCACGAAGGCCGCAGCTG
CTGTTTCCGGTGCGGGGGCAAGGGACGGGAGGGAGGTAGGAGAAGGAGGA
GAGAAGAGAGGAGGTGAGGGTGCGTATGAGTGGTTTGCGTGGTCGGCGTT
TATGATTCAAACGGGGGCCTTTTTGGGAACTGCCGTGTCTTTAGTAGTTG
TGTTGATGCTGTCCTGACGGGAAAGATAATCGAAGTGGAATTGAGATTTG
AGTGTACGTATGTGTGGATAAATGGATGTATGTACATGTGAAGGACTCAG
AGGTCGCAGTCCTTGGCGTTAGTAGTAGTTGTTGTTGGAGTAGGGGGTAA
GCAATAGATTCTCGCAACACTTTTCCTTGGGAAAAAAGAGAAGACGTGGC
GTTTCCTGTGCGTGGATCCAACAAGATGAAAAAAGGTTGAATGGTGTA
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Coding sequence (CDS) from alignment at chr11:520914..523511-

>NO11G01560.2 ID=NO11G01560.2|Name=NO11G01560.2|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr11:520914..523511- (Nannochloropsis oceanica)
ATGCTCTTTCCGAAAACAGGCTTGTGGGGCCAGTTGCCGCTCTTTATCCG
CACATTGCCGGAGGGCAACAAACTGGGAGTTCTCATTTTGGCTGCAGAGC
AGCTTGCCTACATCTTTCCATTACTGTTCATGTACAAGAAACGCCGTTTC
AACAATAGCCGCCGTTCCCAAGAGATGGACATCTGGATCGTCCTTCTCTC
CGGCCTGGCCGTCTCTCTTCTCCTCTCCCGCTACTGGCACGCGCAAGCCG
TGATTGACAAGCACCTACACAGTATCGGCCTCCTGAGCCTCGCCTTTCTC
ACAGGTGCGGTGTGCAGTAGCACCGGCGTCGTCTTCACCCCCTACCTTGC
AACTCTTCCCAAGAGCTACACGTCAGCCCATACAGCAGGTGCGGGTTTGA
GCGGCTTGGCGGTAGCCCTGTTGACTCTTGCCGCAGACGCAGGCTCGCTT
CACCCGAGGTTGAGCATCGAGAGGTACTTTAATGTGCTGTCCCTGGTATT
CCTGGGGAGTTGTTGCGCATTTTATTATGTCCGGACGCATATCAACATGG
AGGAAATGTACGAAGCGATCGGCCATGCTTCCTCTTCCTCCCCCTCTCCG
TCCATATCCTCGCCAAGGCCAACAGCGGCAGCGGCAACGGCGGCGGCTGC
GCAGGAGAATGGAGAGGGAGGAGGAGGGGGAGGGGGGGACTATGGGTCCC
TTTGTGATACCCAGCATCACGGACACAACGACGACCAACCGCTCATTGCC
CGTGTAGTCGTCGACGATGACAGAGTCGCTGCGGCGGCAGCAACAGGAAG
AGCGACCGGCGAATCATCTCGAACGAAAGAGTCATACGCAGCAGTCTTTA
CCTTGCAATGCCTGCTTTCTGCCCTTGCGTATGGCATGGTTCCCTCCATC
CTCCCTCTTGCCTGCAGCGGCTATCGCGACCCTTCCCGCACTTTGATGCT
CTCCACTGTTGGTTTTATGTGCGCTGATCCCTTGGGAAAGCTGGCCACAA
GCTTCTTACCCACCGGGCGGATTTTTGGACTGGGGCTCTTCACGATGGCG
GTGGCGGGGTGGTTGCTTTATTGTGCCGTGCGATCGCCGAAGCCGCCGTT
AAGTGAATTGCCTTTTGGGGGATGGGTGGTGATAGTGGCGAATTCCGTGT
TCAGTTTCGCATTTTCTTTTACGAGCATTTCGATTTTCTTTGACCGGCGA
AGGAAATTGGAGAAGGAGGGAGAGGAGGAAGAAGCCACGAAGGCCGCAGC
TGCTGTTTCCGGTGCGGGGGCAAGGGACGGGAGGGAGGTAGGAGAAGGAG
GAGAGAAGAGAGGAGGTGAGGGTGCGTATGAGTGGTTTGCGTGGTCGGCG
TTTATGATTCAAACGGGGGCCTTTTTGGGAACTGCCGTGTCTTTAGTAGT
TGTGTTGATGCTGTCCTGA
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Synonyms
Publications