NO11G01480, NO11G01480 (gene) Nannochloropsis oceanica

Overview
NameNO11G01480
Unique NameNO11G01480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2638
Alignment locationchr11:497370..500007 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:497370..500007 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G01480 vs. NCBI_GenBank
Match: EWM25077.1 (hypothetical protein Naga_100098g16 [Nannochloropsis gaditana])

HSP 1 Score: 177.2 bits (448), Expect = 1.000e-40
Identity = 114/299 (38.13%), Postives = 160/299 (53.51%), Query Frame = 0 
Query:   89 NPLPFQMVHQARAPVAMVVAQMPLAIATSPTSQQARADHNQPTHVTKPVYDDVRAFDPYSPSATKTAGTTPTGQLTSRADAALITFKTSPLP-XXXXXXXXXXXXXXXXXXLDDSWNIEWSPEVAITSCSEGSETETPASAANGSSPYLPGKTSAETRSMAAFTSTSPAALELPEGVLLARVSTRSLFVREWKSVYWVIVNKRLWIYRSKYDYIPTDYVKDPFSERIKKCIRLHDRLLITRLKNKLYPGEERPLYTFSLKDMDEQGGISLVAKFAGYNHDDVRALREEIDKRVFKARHG 387
            +PL F+ +H+A  P      ++ L    S T  +A A         KP Y D   FDP+SP   + A    + Q   + D   +   T+P P                   LDDSW+IEW P     + S+      P      ++       S+ +    +  ST    +++P+GV+LARVS RS+  REWK VYWVIVN+RLWIYRSK DY PTDY+KDPF++RIKKCI L + L +T +KNKLYPGE+R LYTF ++ ++E G  +++AKFA Y H+D   L   + K +F  + G
Sbjct:   96 SPLQFKELHEAIRP--GTGDRLDLQSRLSRTCGRATAS-------AKPAYPDASDFDPFSP--REKASPRLSAQAALKGDQDTLFSSTAPSPLTPTSMPALPSVPQTRDSALDDSWSIEWEPPHPTRAVSDSVLRNEPKPVKKLAASTPASMLSSSSEGFGS-PSTFCMPVQIPDGVVLARVSARSIIGREWKPVYWVIVNRRLWIYRSKADYYPTDYIKDPFNKRIKKCIPLRESLQLTCIKNKLYPGEKRTLYTFGMESIEEGGKKTMIAKFAAYVHND---LVIAVSKSLFATQRG 379
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BLAST of NO11G01480 vs. NCBI_GenBank
Match: EWM24296.1 (hypothetical protein Naga_100047g23 [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 2.100e-9
Identity = 64/182 (35.16%), Postives = 89/182 (48.90%), Query Frame = 0 
Query:  200 DDSWNIEWSPEVAITSCSEGSETETPASAA-----NGSSPYLPGKTSAETRSMAAFTSTSPAALELPEGVLLARVSTRSLFVREWKSVYWVIVNKRLWIYRSKYDYIPTDYVKDPFSERIKKCIRLHDRLLITRLKNKLYPGEERPLYTFSLKDMDEQGGISLVAKFAGYNHDDVRALREEI 377
            +D + I W    A TS     E   PA+        GS+   P  +  +T S    T  + AA    EG +LAR+S R+L V+EWK  +W I   +L +YRS+      D++ +P    +KK I L D L  + +  K Y G    LY F+L++M + G  SLVAKFA      VR LR  I
Sbjct:  244 NDDFGISWDAPEA-TSAETQPEKPEPAAPVEDRFRQGSAVESPYASQDKTLSP---TEAAIAAEHKTEGTILARISVRTLIVKEWKDTFWTINKGKLLLYRSR-----EDFLYNPVGVMVKKDIPLCDNLRCSEVTCKPYKG-YGDLYHFTLEEMLDYGP-SLVAKFASRRAKSVRELRAVI 414
The following BLAST results are available for this feature:
BLAST of NO11G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25077.11.000e-4038.13hypothetical protein Naga_100098g16 [Nannochlorops... [more]
EWM24296.12.100e-935.16hypothetical protein Naga_100047g23 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002117NSK002117Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01480.2NO11G01480.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G01480.1NO11G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100098g16gene5431Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01480.2NO11G01480.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G01480.1NO11G01480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01480 ID=NO11G01480|Name=NO11G01480|organism=Nannochloropsis oceanica|type=gene|length=2638bp
AGGCCCATCCCCGTAAGCCACGCACTCCACCAAGCAGGCGGCCAAGGCGT
ACCATGCCCGACAGATTCTTCGACTCGGGCCCTTTTGATGACCCATTTTG
CCCGCCCCCTGTGCCTACATCCACGCCTGTAACCAATCCGTTCGCCCAGg
taaaaagtgtagatgtacgtgtgcgtagtttttccccgtctacccccttg
ctccctcgctcatactccacttcttacccgcgtctttcgcccccacccgc
acgcagCCCGAAGAATTCCCCTTCTGTTCCCTCGACACAGCCGCGCTGTC
GGGCAAAATGGTTTTCATGGCCACTTCTCGTTCGTCATCCCCGCCCACCC
CGGTCGGAAATCCCTTCGAGGAACCCGACGTCTTTGCCGCCTCGTCCAAG
TCCCTCCCGGCCCCCATGACTACAAATCCGTTGCCTTTTCAAATGGTACA
CCAGGCGAGAGCCCCGGTTGCCATGGTGGTGGCGCAAATGCCACTGGCGA
TTGCTACTTCCCCGACGTCTCAGCAAGCGCGTGCGGATCATAATCAACCT
ACGCATGTGACCAAGCCCGTGTATGATGATGTCAGAGCCTTTGAgtacgt
cttggtttgccttttgggggggttgtaaaggcgagaatgtaccgtctgat
ttgagggtgcacgtgtccgctcatcgttggaagtttattatcaccgttcc
ctcccatgccatcttctattttctccctcctccctccacagTCCATACTC
CCCTTCGGCCACGAAGACCGCGGGTACCACTCCAACTGGTCAGCTTACCT
CCAGAGCAGACGCAGCATTGATTACCTTCAAGACGTCGCCTTTGCCCTCA
CCAACATCACGAAAACAGCAGCAGCAGGAGCAGCAGCAGCCAGAACGTCA
GCTCGACGACAGCTGGAATATTGAATGGAGTCCTGAGGTAGCCATAACAA
GCTGCAGTGAAGGGTCAGAGACAGAGACACCCGCATCTGCGGCGAATGGC
AGTTCACCCTACTTGCCGGGCAAGACAAGTGCGGAAACCAGGAGTATGGC
TGCTTTCACATCTACCTCGCCTGCCGCGCTTGAGCTGCCGGAGGGAGTGC
TCTTGGCACGGGTCTCCACCCGCAGTTTATTCGTGCGAGgtcagtactct
ccacaatatttgccgtatttaattatctgttcgcaagtttctaaagtatt
aatgtaggatcttttgtattccccaatttctaatcaacaccaacatatct
catctccctttcgtccctttccacccttctctttttcctttgcaaccttg
ctcacttcctctcagAGTGGAAATCTGTGTATTGGGTGATTGTCAATAAA
CGGCTGTGGATCTACCGCTCCAAGTATGACTACATCCCCACAGACTATGT
CAAGgtgaggaggaagggagggagggagaaagggcgtggagggagaagaa
tattcggtgaaaacgccttttatggttgtataccacgtgtggcagtggag
gatgaagcaaatagggagtgaaagaaagcgacgaatttccgcaaagtctt
ccaagttgcacacgtgcccatagttttatgatgcccctccttccttcctt
cctcccctcctccctcctttctttcctctcgcataaccccaccagGACCC
CTTCAGCGAGCGTATTAAGAAATGCATCCGTCTCCACGACCGTCTGTTGA
TTACAAGATTGAAAAACAAGCTCTATCCAGGAGAGGAGCGCCCGTTGTAC
ACATTCAGCCTGAAGGACATGGACGAGCAGGGTGGGATATCgtgagtttg
agaagagggatgtcaggaggaattgggtgaaggccccaagagcagaactg
aagaaagaatacgaggcccctctcctcattctaaacttccgccctccttc
cccctcttcttccattattctccttattcccagGCTGGTGGCCAAATTTG
CCGGCTACAACCATGACGACGTTCGCGCGCTCCGGGAGGAGATCGACAAG
CGTGTTTTTAAAGCCCGCCATGGCGTAAAGCAAGGCACCACTTGAGAGAA
ATGTTTTAAACGCGTCACGCCCTTATAGCATACAGCTGACGGATCCATAT
GAGGGAGCGAATGATCTGTAACGACGGTGTACAAAAACAGAATTTTGCCA
GAAATATCACACAACAAGTGTTGGGCGATGCAGAGGGGAGGAACAATTAG
AGAGAAAAGCACTTCAAGTGAGTGGGGTTGCAGGTGCACCAGAAGAGGAT
GCCATAGGTACGATACTGACAAGACAACAACATTTTGCGTTGGAAATATA
TGACCATACAATTACAAAGGACATAAAGACACATTTATCATCGCAAAGTT
TGAAGGCGAGGGGGGGGGGTATGTGAGCTGCTGTTTGATTTGTTCTGCAT
ACAGAGCATAAAGCGTCACTTCGTGGCTAGCATGTACAGGTCTCTTTATT
TAAGCACATAGATCTAGCAATCAATGTATCTTCCTAGTCTTCGGGACATT
CAAATTATAAGTAGATAAAATGGGCGACCAGTCGCTTCGCATCACCCCTA
TACACATCGTTGCGCACACACTTTTCCTCACTCTCAGGCGCAGGGATTAT
GTAAAAAGACAAAATAAGAAACCAAGCAAGAAATCAAA
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protein sequence of NO11G01480.2

>NO11G01480.2-protein ID=NO11G01480.2-protein|Name=NO11G01480.2|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MPDRFFDSGPFDDPFCPPPVPTSTPVTNPFAQPEEFPFCSLDTAALSGKM
VFMATSRSSSPPTPVGNPFEEPDVFAASSKSLPAPMTTNPLPFQMVHQAR
APVAMVVAQMPLAIATSPTSQQARADHNQPTHVTKPVYDDVRAFDPYSPS
ATKTAGTTPTGQLTSRADAALITFKTSPLPSPTSRKQQQQEQQQPERQLD
DSWNIEWSPEVAITSCSEGSETETPASAANGSSPYLPGKTSAETRSMAAF
TSTSPAALELPEGVLLARVSTRSLFVREWKSVYWVIVNKRLWIYRSKYDY
IPTDYVKVRRKGGREKGRGGRRIFGENAFYGCIPRVAVEDEANRE*
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protein sequence of NO11G01480.1

>NO11G01480.1-protein ID=NO11G01480.1-protein|Name=NO11G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MPDRFFDSGPFDDPFCPPPVPTSTPVTNPFAQPEEFPFCSLDTAALSGKM
VFMATSRSSSPPTPVGNPFEEPDVFAASSKSLPAPMTTNPLPFQMVHQAR
APVAMVVAQMPLAIATSPTSQQARADHNQPTHVTKPVYDDVRAFDPYSPS
ATKTAGTTPTGQLTSRADAALITFKTSPLPSPTSRKQQQQEQQQPERQLD
DSWNIEWSPEVAITSCSEGSETETPASAANGSSPYLPGKTSAETRSMAAF
TSTSPAALELPEGVLLARVSTRSLFVREWKSVYWVIVNKRLWIYRSKYDY
IPTDYVKDPFSERIKKCIRLHDRLLITRLKNKLYPGEERPLYTFSLKDMD
EQGGISLVAKFAGYNHDDVRALREEIDKRVFKARHGVKQGTT*
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Synonyms
Publications