NO11G01480.1, NO11G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01480.1
Unique NameNO11G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1825
Alignment locationchr11:497370..500007 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:497370..500007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01480.1 vs.
Match: EWM25077.1 (hypothetical protein Naga_100098g16 [Nannochloropsis gaditana])

HSP 1 Score: 252.3 bits (643), Expect = 2.500e-63
Identity = 164/397 (41.31%), Postives = 223/397 (56.17%), Query Frame = 0 
Query:    1 MPDRFFDSGPFDDPFCPPPVPTSTPVTNPFAQPEEFPFCSLDTAALSGKMVFMATSRSSSPPTPVGNPFEEPDVFAASSKSLPA-PMTT---------NPLPFQMVHQARAPVAMVVAQMPLAIATSPTSQQARADHNQPTHVTKPVYDDVRAFDPYSPSATKTAGTTPTGQLTSRADAALITFKTSPLP-SPTSRKQQQQEQQQPERQLDDSWNIEWSPEVAITSCSEGSETETPASAANGSSPYLPGKTSAETRSMAAFTSTSPAALELPEGVLLARVSTRSLFVREWKSVYWVIVNKRLWIYRSKYDYIPTDYVKDPFSERIKKCIRLHDRLLITRLKNKLYPGEERPLYTFSLKDMDEQGGISLVAKFAGYNHDDVRALREEIDKRVFKARHG 387
            M   F+ + PF DP+CPPPVPTSTPV+NPF + +  PF   DT   S K V M      S PTPVGNPFE+ D FAAS+  +PA P+ +         +PL F+ +H+A  P      ++ L    S T  +A A         KP Y D   FDP+SP   + A    + Q   + D   +   T+P P +PTS        Q  +  LDDSW+IEW P     + S+      P      ++       S+ +    +  ST    +++P+GV+LARVS RS+  REWK VYWVIVN+RLWIYRSK DY PTDY+KDPF++RIKKCI L + L +T +KNKLYPGE+R LYTF ++ ++E G  +++AKFA Y H+D   L   + K +F  + G
Sbjct:    1 MSQGFYSTDPFGDPYCPPPVPTSTPVSNPFGEGKPTPF---DTDLFSNKAVSMTHLPPLSIPTPVGNPFEDVDAFAASTPLVPAKPVASPAEFGLAPASPLQFKELHEAIRPGTG--DRLDLQSRLSRTCGRATAS-------AKPAYPDASDFDPFSPR--EKASPRLSAQAALKGDQDTLFSSTAPSPLTPTSMPALPSVPQTRDSALDDSWSIEWEPPHPTRAVSDSVLRNEPKPVKKLAASTPASMLSSSSEGFGS-PSTFCMPVQIPDGVVLARVSARSIIGREWKPVYWVIVNRRLWIYRSKADYYPTDYIKDPFNKRIKKCIPLRESLQLTCIKNKLYPGEKRTLYTFGMESIEEGGKKTMIAKFAAYVHND---LVIAVSKSLFATQRG 379
The following BLAST results are available for this feature:
BLAST of NO11G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25077.12.500e-6341.31hypothetical protein Naga_100098g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01480NO11G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01480.1NO11G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01480.1.cds1NO11G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01480.1.cds2NO11G01480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01480.1.cds3NO11G01480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01480.1.cds4NO11G01480.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01480.1.cds5NO11G01480.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01480.1.cds6NO11G01480.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01480.1 ID=NO11G01480.1|Name=NO11G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp
AGGCCCATCCCCGTAAGCCACGCACTCCACCAAGCAGGCGGCCAAGGCGT
ACCATGCCCGACAGATTCTTCGACTCGGGCCCTTTTGATGACCCATTTTG
CCCGCCCCCTGTGCCTACATCCACGCCTGTAACCAATCCGTTCGCCCAGC
CCGAAGAATTCCCCTTCTGTTCCCTCGACACAGCCGCGCTGTCGGGCAAA
ATGGTTTTCATGGCCACTTCTCGTTCGTCATCCCCGCCCACCCCGGTCGG
AAATCCCTTCGAGGAACCCGACGTCTTTGCCGCCTCGTCCAAGTCCCTCC
CGGCCCCCATGACTACAAATCCGTTGCCTTTTCAAATGGTACACCAGGCG
AGAGCCCCGGTTGCCATGGTGGTGGCGCAAATGCCACTGGCGATTGCTAC
TTCCCCGACGTCTCAGCAAGCGCGTGCGGATCATAATCAACCTACGCATG
TGACCAAGCCCGTGTATGATGATGTCAGAGCCTTTGATCCATACTCCCCT
TCGGCCACGAAGACCGCGGGTACCACTCCAACTGGTCAGCTTACCTCCAG
AGCAGACGCAGCATTGATTACCTTCAAGACGTCGCCTTTGCCCTCACCAA
CATCACGAAAACAGCAGCAGCAGGAGCAGCAGCAGCCAGAACGTCAGCTC
GACGACAGCTGGAATATTGAATGGAGTCCTGAGGTAGCCATAACAAGCTG
CAGTGAAGGGTCAGAGACAGAGACACCCGCATCTGCGGCGAATGGCAGTT
CACCCTACTTGCCGGGCAAGACAAGTGCGGAAACCAGGAGTATGGCTGCT
TTCACATCTACCTCGCCTGCCGCGCTTGAGCTGCCGGAGGGAGTGCTCTT
GGCACGGGTCTCCACCCGCAGTTTATTCGTGCGAGAGTGGAAATCTGTGT
ATTGGGTGATTGTCAATAAACGGCTGTGGATCTACCGCTCCAAGTATGAC
TACATCCCCACAGACTATGTCAAGGACCCCTTCAGCGAGCGTATTAAGAA
ATGCATCCGTCTCCACGACCGTCTGTTGATTACAAGATTGAAAAACAAGC
TCTATCCAGGAGAGGAGCGCCCGTTGTACACATTCAGCCTGAAGGACATG
GACGAGCAGGGTGGGATATCGCTGGTGGCCAAATTTGCCGGCTACAACCA
TGACGACGTTCGCGCGCTCCGGGAGGAGATCGACAAGCGTGTTTTTAAAG
CCCGCCATGGCGTAAAGCAAGGCACCACTTGAGAGAAATGTTTTAAACGC
GTCACGCCCTTATAGCATACAGCTGACGGATCCATATGAGGGAGCGAATG
ATCTGTAACGACGGTGTACAAAAACAGAATTTTGCCAGAAATATCACACA
ACAAGTGTTGGGCGATGCAGAGGGGAGGAACAATTAGAGAGAAAAGCACT
TCAAGTGAGTGGGGTTGCAGGTGCACCAGAAGAGGATGCCATAGGTACGA
TACTGACAAGACAACAACATTTTGCGTTGGAAATATATGACCATACAATT
ACAAAGGACATAAAGACACATTTATCATCGCAAAGTTTGAAGGCGAGGGG
GGGGGGTATGTGAGCTGCTGTTTGATTTGTTCTGCATACAGAGCATAAAG
CGTCACTTCGTGGCTAGCATGTACAGGTCTCTTTATTTAAGCACATAGAT
CTAGCAATCAATGTATCTTCCTAGTCTTCGGGACATTCAAATTATAAGTA
GATAAAATGGGCGACCAGTCGCTTCGCATCACCCCTATACACATCGTTGC
GCACACACTTTTCCTCACTCTCAGGCGCAGGGATTATGTAAAAAGACAAA
ATAAGAAACCAAGCAAGAAATCAAA
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protein sequence of NO11G01480.1

>NO11G01480.1-protein ID=NO11G01480.1-protein|Name=NO11G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MPDRFFDSGPFDDPFCPPPVPTSTPVTNPFAQPEEFPFCSLDTAALSGKM
VFMATSRSSSPPTPVGNPFEEPDVFAASSKSLPAPMTTNPLPFQMVHQAR
APVAMVVAQMPLAIATSPTSQQARADHNQPTHVTKPVYDDVRAFDPYSPS
ATKTAGTTPTGQLTSRADAALITFKTSPLPSPTSRKQQQQEQQQPERQLD
DSWNIEWSPEVAITSCSEGSETETPASAANGSSPYLPGKTSAETRSMAAF
TSTSPAALELPEGVLLARVSTRSLFVREWKSVYWVIVNKRLWIYRSKYDY
IPTDYVKDPFSERIKKCIRLHDRLLITRLKNKLYPGEERPLYTFSLKDMD
EQGGISLVAKFAGYNHDDVRALREEIDKRVFKARHGVKQGTT*
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mRNA from alignment at chr11:497370..500007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01480.1 ID=NO11G01480.1|Name=NO11G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2638bp|location=Sequence derived from alignment at chr11:497370..500007- (Nannochloropsis oceanica)
AGGCCCATCCCCGTAAGCCACGCACTCCACCAAGCAGGCGGCCAAGGCGT
ACCATGCCCGACAGATTCTTCGACTCGGGCCCTTTTGATGACCCATTTTG
CCCGCCCCCTGTGCCTACATCCACGCCTGTAACCAATCCGTTCGCCCAGG
TAAAAAGTGTAGATGTACGTGTGCGTAGTTTTTCCCCGTCTACCCCCTTG
CTCCCTCGCTCATACTCCACTTCTTACCCGCGTCTTTCGCCCCCACCCGC
ACGCAGCCCGAAGAATTCCCCTTCTGTTCCCTCGACACAGCCGCGCTGTC
GGGCAAAATGGTTTTCATGGCCACTTCTCGTTCGTCATCCCCGCCCACCC
CGGTCGGAAATCCCTTCGAGGAACCCGACGTCTTTGCCGCCTCGTCCAAG
TCCCTCCCGGCCCCCATGACTACAAATCCGTTGCCTTTTCAAATGGTACA
CCAGGCGAGAGCCCCGGTTGCCATGGTGGTGGCGCAAATGCCACTGGCGA
TTGCTACTTCCCCGACGTCTCAGCAAGCGCGTGCGGATCATAATCAACCT
ACGCATGTGACCAAGCCCGTGTATGATGATGTCAGAGCCTTTGAGTACGT
CTTGGTTTGCCTTTTGGGGGGGTTGTAAAGGCGAGAATGTACCGTCTGAT
TTGAGGGTGCACGTGTCCGCTCATCGTTGGAAGTTTATTATCACCGTTCC
CTCCCATGCCATCTTCTATTTTCTCCCTCCTCCCTCCACAGTCCATACTC
CCCTTCGGCCACGAAGACCGCGGGTACCACTCCAACTGGTCAGCTTACCT
CCAGAGCAGACGCAGCATTGATTACCTTCAAGACGTCGCCTTTGCCCTCA
CCAACATCACGAAAACAGCAGCAGCAGGAGCAGCAGCAGCCAGAACGTCA
GCTCGACGACAGCTGGAATATTGAATGGAGTCCTGAGGTAGCCATAACAA
GCTGCAGTGAAGGGTCAGAGACAGAGACACCCGCATCTGCGGCGAATGGC
AGTTCACCCTACTTGCCGGGCAAGACAAGTGCGGAAACCAGGAGTATGGC
TGCTTTCACATCTACCTCGCCTGCCGCGCTTGAGCTGCCGGAGGGAGTGC
TCTTGGCACGGGTCTCCACCCGCAGTTTATTCGTGCGAGGTCAGTACTCT
CCACAATATTTGCCGTATTTAATTATCTGTTCGCAAGTTTCTAAAGTATT
AATGTAGGATCTTTTGTATTCCCCAATTTCTAATCAACACCAACATATCT
CATCTCCCTTTCGTCCCTTTCCACCCTTCTCTTTTTCCTTTGCAACCTTG
CTCACTTCCTCTCAGAGTGGAAATCTGTGTATTGGGTGATTGTCAATAAA
CGGCTGTGGATCTACCGCTCCAAGTATGACTACATCCCCACAGACTATGT
CAAGGTGAGGAGGAAGGGAGGGAGGGAGAAAGGGCGTGGAGGGAGAAGAA
TATTCGGTGAAAACGCCTTTTATGGTTGTATACCACGTGTGGCAGTGGAG
GATGAAGCAAATAGGGAGTGAAAGAAAGCGACGAATTTCCGCAAAGTCTT
CCAAGTTGCACACGTGCCCATAGTTTTATGATGCCCCTCCTTCCTTCCTT
CCTCCCCTCCTCCCTCCTTTCTTTCCTCTCGCATAACCCCACCAGGACCC
CTTCAGCGAGCGTATTAAGAAATGCATCCGTCTCCACGACCGTCTGTTGA
TTACAAGATTGAAAAACAAGCTCTATCCAGGAGAGGAGCGCCCGTTGTAC
ACATTCAGCCTGAAGGACATGGACGAGCAGGGTGGGATATCGTGAGTTTG
AGAAGAGGGATGTCAGGAGGAATTGGGTGAAGGCCCCAAGAGCAGAACTG
AAGAAAGAATACGAGGCCCCTCTCCTCATTCTAAACTTCCGCCCTCCTTC
CCCCTCTTCTTCCATTATTCTCCTTATTCCCAGGCTGGTGGCCAAATTTG
CCGGCTACAACCATGACGACGTTCGCGCGCTCCGGGAGGAGATCGACAAG
CGTGTTTTTAAAGCCCGCCATGGCGTAAAGCAAGGCACCACTTGAGAGAA
ATGTTTTAAACGCGTCACGCCCTTATAGCATACAGCTGACGGATCCATAT
GAGGGAGCGAATGATCTGTAACGACGGTGTACAAAAACAGAATTTTGCCA
GAAATATCACACAACAAGTGTTGGGCGATGCAGAGGGGAGGAACAATTAG
AGAGAAAAGCACTTCAAGTGAGTGGGGTTGCAGGTGCACCAGAAGAGGAT
GCCATAGGTACGATACTGACAAGACAACAACATTTTGCGTTGGAAATATA
TGACCATACAATTACAAAGGACATAAAGACACATTTATCATCGCAAAGTT
TGAAGGCGAGGGGGGGGGGTATGTGAGCTGCTGTTTGATTTGTTCTGCAT
ACAGAGCATAAAGCGTCACTTCGTGGCTAGCATGTACAGGTCTCTTTATT
TAAGCACATAGATCTAGCAATCAATGTATCTTCCTAGTCTTCGGGACATT
CAAATTATAAGTAGATAAAATGGGCGACCAGTCGCTTCGCATCACCCCTA
TACACATCGTTGCGCACACACTTTTCCTCACTCTCAGGCGCAGGGATTAT
GTAAAAAGACAAAATAAGAAACCAAGCAAGAAATCAAA
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Coding sequence (CDS) from alignment at chr11:497370..500007-

>NO11G01480.1 ID=NO11G01480.1|Name=NO11G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr11:497370..500007- (Nannochloropsis oceanica)
ATGCCCGACAGATTCTTCGACTCGGGCCCTTTTGATGACCCATTTTGCCC
GCCCCCTGTGCCTACATCCACGCCTGTAACCAATCCGTTCGCCCAGCCCG
AAGAATTCCCCTTCTGTTCCCTCGACACAGCCGCGCTGTCGGGCAAAATG
GTTTTCATGGCCACTTCTCGTTCGTCATCCCCGCCCACCCCGGTCGGAAA
TCCCTTCGAGGAACCCGACGTCTTTGCCGCCTCGTCCAAGTCCCTCCCGG
CCCCCATGACTACAAATCCGTTGCCTTTTCAAATGGTACACCAGGCGAGA
GCCCCGGTTGCCATGGTGGTGGCGCAAATGCCACTGGCGATTGCTACTTC
CCCGACGTCTCAGCAAGCGCGTGCGGATCATAATCAACCTACGCATGTGA
CCAAGCCCGTGTATGATGATGTCAGAGCCTTTGATCCATACTCCCCTTCG
GCCACGAAGACCGCGGGTACCACTCCAACTGGTCAGCTTACCTCCAGAGC
AGACGCAGCATTGATTACCTTCAAGACGTCGCCTTTGCCCTCACCAACAT
CACGAAAACAGCAGCAGCAGGAGCAGCAGCAGCCAGAACGTCAGCTCGAC
GACAGCTGGAATATTGAATGGAGTCCTGAGGTAGCCATAACAAGCTGCAG
TGAAGGGTCAGAGACAGAGACACCCGCATCTGCGGCGAATGGCAGTTCAC
CCTACTTGCCGGGCAAGACAAGTGCGGAAACCAGGAGTATGGCTGCTTTC
ACATCTACCTCGCCTGCCGCGCTTGAGCTGCCGGAGGGAGTGCTCTTGGC
ACGGGTCTCCACCCGCAGTTTATTCGTGCGAGAGTGGAAATCTGTGTATT
GGGTGATTGTCAATAAACGGCTGTGGATCTACCGCTCCAAGTATGACTAC
ATCCCCACAGACTATGTCAAGGACCCCTTCAGCGAGCGTATTAAGAAATG
CATCCGTCTCCACGACCGTCTGTTGATTACAAGATTGAAAAACAAGCTCT
ATCCAGGAGAGGAGCGCCCGTTGTACACATTCAGCCTGAAGGACATGGAC
GAGCAGGGTGGGATATCGCTGGTGGCCAAATTTGCCGGCTACAACCATGA
CGACGTTCGCGCGCTCCGGGAGGAGATCGACAAGCGTGTTTTTAAAGCCC
GCCATGGCGTAAAGCAAGGCACCACTTGA
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Synonyms
Publications