NO11G01440, NO11G01440 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G01440
Unique Name	NO11G01440
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1953
Alignment location	chr11:486727..488679 -

Link to JBrowse

Properties


Property Name	Value
Description	26s proteasome non-atpase regulatory subunit 14

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:486727..488679 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0061578	Lys63-specific deubiquitinase activity
GO:0005515	protein binding
GO:0016787	hydrolase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR035299	PSMD14
IPR037518	MPN
IPR024969	Rpn11/EIF3F_C
IPR000555	JAMM/MPN+_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006464	cellular protein modification process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Homology

[Close]

BLAST of NO11G01440 vs. NCBI_GenBank
Match: EWM25063.1 (26s proteasome non-atpase regulatory subunit 14 [Nannochloropsis gaditana])

HSP 1 Score: 439.9 bits (1130), Expect = 5.300e-120
Identity = 212/216 (98.15%), Postives = 216/216 (100.00%), Query Frame = 0

Query:    1 MHRLQDLFRNLQGGGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQV 217
            MHRLQDLFRNLQGGGQVPTPDGPVVD+SEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVV+DPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSN+GHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQ+
Sbjct:    1 MHRLQDLFRNLQGGGQVPTPDGPVVDSSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVIDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNIGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQM 216

[Close]

BLAST of NO11G01440 vs. NCBI_GenBank
Match: CBJ49248.1 (26S proteasome regulatory subunit [Ectocarpus siliculosus])

HSP 1 Score: 386.0 bits (990), Expect = 9.000e-104
Identity = 190/217 (87.56%), Postives = 201/217 (92.63%), Query Frame = 0

Query:    1 MHRLQDLFRNLQGGGQ-VPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQV 217
            M R Q LF N+QG GQ    PD PVVDTSEK+HISSLALLKMLKHGRAGVPMEVMGLMLG+FVDDYTVNCIDVFAMPQSGT V+VEAVDPVFQ KML+MLKQTGRPEMVVGWYHSHPGFGCWLSGVD+NTQQSFEQLN RAV++VVDPIQSVKGKVVIDAFR INPQLM+L QEPRQTTSNVGHLNKPS+QALIHGL RHYYSIVIDYRKNELEEQ+
Sbjct:    1 MERFQQLF-NMQGRGQGGGAPDAPVVDTSEKLHISSLALLKMLKHGRAGVPMEVMGLMLGHFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNARAVSIVVDPIQSVKGKVVIDAFRLINPQLMMLGQEPRQTTSNVGHLNKPSVQALIHGLQRHYYSIVIDYRKNELEEQM 216

[Close]

BLAST of NO11G01440 vs. NCBI_GenBank
Match: XP_009533780.1 (hypothetical protein PHYSODRAFT_563821 [Phytophthora sojae] >EGZ11035.1 hypothetical protein PHYSODRAFT_563821 [Phytophthora sojae])

HSP 1 Score: 381.7 bits (979), Expect = 1.700e-102
Identity = 189/218 (86.70%), Postives = 197/218 (90.37%), Query Frame = 0

Query:    1 MHRLQDLFRNLQG--GGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQV 217
            M RLQ LF NL G  G      DGP+VDT+EKVHISSLALLKMLKHGRAGVPMEVMGLMLG FVDDYTVNCIDVFAMPQSGT V+VEAVDPVFQ KMLEMLKQTGR EMVVGWYHSHPGFGCWLSGVD+NTQQSFE LN RAVAVVVDPIQSVKGKVVIDAFR INPQLM++ QEPRQTTSN+GHLNKPSIQALIHGLNRHYYSI IDYRKNELEEQ+
Sbjct:    1 MDRLQRLFGNLPGLPGQGXXXADGPLVDTAEKVHISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQMKMLEMLKQTGRAEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVVDPIQSVKGKVVIDAFRLINPQLMMMGQEPRQTTSNIGHLNKPSIQALIHGLNRHYYSIAIDYRKNELEEQM 218

[Close]

BLAST of NO11G01440 vs. NCBI_GenBank
Match: XP_008915960.1 (26S proteasome non-ATPase regulatory subunit 14 [Phytophthora parasitica INRA-310] >ETI54527.1 26S proteasome non-ATPase regulatory subunit 14 [Phytophthora parasitica P1569] >ETK94380.1 26S proteasome non-ATPase regulatory subunit 14 [Phytophthora parasitica] >ETL47776.1 26S proteasome non-ATPase regulatory subunit 14 [Phytophthora parasitica] >ETM00870.1 26S proteasome non-ATPase regulatory subunit 14 [Phytophthora parasitica] >ETM54045.1 26S proteasome non-ATPase regulatory subunit 14 [Phytophthora parasitica] >ETM98725.1 26S proteasome non-ATPase regulatory subunit 14 [Phytophthora parasitica INRA-310] >ETO83279.1 26S proteasome non-ATPase regulatory subunit 14 [Phytophthora parasitica P1976] >ETP24358.1 26S proteasome non-ATPase regulatory subunit 14 [Phytophthora parasitica CJ01A1] >ETP52332.1 26S proteasome non-ATPase regulatory subunit 14 [Phytophthora parasitica P10297] >KUF98012.1 Calcium-dependent protein kinase 17 [Phytophthora nicotianae] >KUG02150.1 26S proteasome non-ATPase regulatory subunit 14 [Phytophthora nicotianae])

HSP 1 Score: 381.7 bits (979), Expect = 1.700e-102
Identity = 189/218 (86.70%), Postives = 197/218 (90.37%), Query Frame = 0

Query:    1 MHRLQDLFRNLQG--GGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQV 217
            M RLQ LF NL G  G      DGP+VDT+EKVHISSLALLKMLKHGRAGVPMEVMGLMLG FVDDYTVNCIDVFAMPQSGT V+VEAVDPVFQ KMLEMLKQTGR EMVVGWYHSHPGFGCWLSGVD+NTQQSFE LN RAVAVVVDPIQSVKGKVVIDAFR INPQLM++ QEPRQTTSN+GHLNKPSIQALIHGLNRHYYSI IDYRKNELEEQ+
Sbjct:    1 MDRLQRLFGNLPGLPGQGXXXADGPLVDTAEKVHISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQMKMLEMLKQTGRAEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVVDPIQSVKGKVVIDAFRLINPQLMMMGQEPRQTTSNIGHLNKPSIQALIHGLNRHYYSIAIDYRKNELEEQM 218

[Close]

BLAST of NO11G01440 vs. NCBI_GenBank
Match: OWZ20393.1 (26S proteasome non-ATPase regulatory protein [Phytophthora megakarya])

HSP 1 Score: 381.7 bits (979), Expect = 1.700e-102
Identity = 189/218 (86.70%), Postives = 197/218 (90.37%), Query Frame = 0

Query:    1 MHRLQDLFRNLQG--GGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQV 217
            M RLQ LF NL G  G      DGP+VDT+EKVHISSLALLKMLKHGRAGVPMEVMGLMLG FVDDYTVNCIDVFAMPQSGT V+VEAVDPVFQ KMLEMLKQTGR EMVVGWYHSHPGFGCWLSGVD+NTQQSFE LN RAVAVVVDPIQSVKGKVVIDAFR INPQLM++ QEPRQTTSN+GHLNKPSIQALIHGLNRHYYSI IDYRKNELEEQ+
Sbjct:    1 MDRLQRLFGNLPGLPGQGXXXSDGPLVDTAEKVHISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNCIDVFAMPQSGTGVSVEAVDPVFQMKMLEMLKQTGRAEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVVDPIQSVKGKVVIDAFRLINPQLMMMGQEPRQTTSNIGHLNKPSIQALIHGLNRHYYSIAIDYRKNELEEQM 218

[Close]

BLAST of NO11G01440 vs. NCBI_GenBank
Match: XP_002902760.1 (26S proteasome non-ATPase regulatory subunit 14, putative [Phytophthora infestans T30-4] >EEY55930.1 26S proteasome non-ATPase regulatory subunit 14, putative [Phytophthora infestans T30-4])

HSP 1 Score: 380.2 bits (975), Expect = 5.000e-102
Identity = 188/218 (86.24%), Postives = 197/218 (90.37%), Query Frame = 0

Query:    1 MHRLQDLFRNLQG--GGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQV 217
            M RLQ LF NL G  G      DGP+VDT+EKVHISSLALLKMLKHGRAGVPMEVMGLMLG FVDD+TVNCIDVFAMPQSGT V+VEAVDPVFQ KMLEMLKQTGR EMVVGWYHSHPGFGCWLSGVD+NTQQSFE LN RAVAVVVDPIQSVKGKVVIDAFR INPQLM++ QEPRQTTSN+GHLNKPSIQALIHGLNRHYYSI IDYRKNELEEQ+
Sbjct:    1 MDRLQRLFGNLPGLPGQGXXXADGPLVDTAEKVHISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDFTVNCIDVFAMPQSGTGVSVEAVDPVFQMKMLEMLKQTGRAEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVVDPIQSVKGKVVIDAFRLINPQLMMMGQEPRQTTSNIGHLNKPSIQALIHGLNRHYYSIAIDYRKNELEEQM 218

[Close]

BLAST of NO11G01440 vs. NCBI_GenBank
Match: XP_009827953.1 (26S proteasome non-ATPase regulatory subunit 14 [Aphanomyces astaci] >ETV82284.1 26S proteasome non-ATPase regulatory subunit 14 [Aphanomyces astaci])

HSP 1 Score: 376.7 bits (966), Expect = 5.500e-101
Identity = 186/219 (84.93%), Postives = 196/219 (89.50%), Query Frame = 0

Query:    1 MHRLQDLFRNL---QGGGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQV 217
            M RLQ LF NL   QG G     DGP VDT+EKVHISSLALLKMLKHGRAGVPMEVMGLMLG FVDDYTV C+DVFAMPQSGT V+VEAVDPVFQ KML+MLKQTGR EMVVGWYHSHPGFGCWLSGVD+NTQQSFE LN RAV++VVDPIQSVKGKVVIDAFR INPQLM+L QEPRQTTSN+GHLNKPSIQALIHGLNRHYYSI IDYRKNELEEQ+
Sbjct:    1 MDRLQRLFGNLPGMQGHGMGGANDGPAVDTAEKVHISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVVCLDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRAEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNARAVSIVVDPIQSVKGKVVIDAFRLINPQLMMLGQEPRQTTSNIGHLNKPSIQALIHGLNRHYYSIAIDYRKNELEEQM 219

[Close]

BLAST of NO11G01440 vs. NCBI_GenBank
Match: XP_008614995.1 (26S proteasome non-ATPase regulatory subunit 14 [Saprolegnia diclina VS20] >XP_012205445.1 26S proteasome non-ATPase regulatory subunit 14 [Saprolegnia parasitica CBS 223.65] >EQC31596.1 26S proteasome non-ATPase regulatory subunit 14 [Saprolegnia diclina VS20] >KDO23811.1 26S proteasome non-ATPase regulatory subunit 14 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 376.3 bits (965), Expect = 7.200e-101
Identity = 185/219 (84.47%), Postives = 196/219 (89.50%), Query Frame = 0

Query:    1 MHRLQDLFRNL---QGGGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQV 217
            M RLQ LF NL   QG G     DGP VDT+EKVHISSLALLKMLKHGRAGVPMEVMGLMLG FVDDYTV C+DVFAMPQSGT V+VEAVDPVFQ KML+MLKQTGR EMVVGWYHSHPGFGCWLSGVD+NTQQSFE LN RAV++V+DPIQSVKGKVVIDAFR INPQLM+L QEPRQTTSN+GHLNKPSIQALIHGLNRHYYSI IDYRKNELEEQ+
Sbjct:    1 MDRLQRLFGNLPGMQGHGMGGANDGPAVDTAEKVHISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVVCLDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRAEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNARAVSIVIDPIQSVKGKVVIDAFRLINPQLMMLGQEPRQTTSNIGHLNKPSIQALIHGLNRHYYSIAIDYRKNELEEQM 219

[Close]

BLAST of NO11G01440 vs. NCBI_GenBank
Match: OQR99130.1 (26S proteasome non-ATPase regulatory subunit 14 [Achlya hypogyna])

HSP 1 Score: 375.2 bits (962), Expect = 1.600e-100
Identity = 184/218 (84.40%), Postives = 195/218 (89.45%), Query Frame = 0

Query:    1 MHRLQDLFRNLQG--GGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQV 217
            M RLQ LF NL G  G      DGP VDT+EKVHISSLALLKMLKHGRAGVPMEVMGLMLG FVDDYTV C+DVFAMPQSGT V+VEAVDPVFQ KML+MLKQTGR EMVVGWYHSHPGFGCWLSGVD+NTQQSFE LN RAV++V+DPIQSVKGKVVIDAFR INPQLM+L QEPRQTTSN+GHLNKPSIQALIHGLNRHYYSI IDYRKNELEEQ+
Sbjct:    1 MDRLQRLFGNLPGMQGSMGGANDGPAVDTAEKVHISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVVCLDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRAEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNARAVSIVIDPIQSVKGKVVIDAFRLINPQLMMLGQEPRQTTSNIGHLNKPSIQALIHGLNRHYYSIAIDYRKNELEEQM 218

[Close]

BLAST of NO11G01440 vs. NCBI_GenBank
Match: XP_008867114.1 (26S proteasome non-ATPase regulatory subunit 14 [Aphanomyces invadans] >ETW04158.1 26S proteasome non-ATPase regulatory subunit 14 [Aphanomyces invadans])

HSP 1 Score: 374.4 bits (960), Expect = 2.700e-100
Identity = 185/219 (84.47%), Postives = 195/219 (89.04%), Query Frame = 0

Query:    1 MHRLQDLFRNL---QGGGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQV 217
            M RLQ LF NL   QG G     D P VDT+EKVHISSLALLKMLKHGRAGVPMEVMGLMLG FVDDYTV C+DVFAMPQSGT V+VEAVDPVFQ KML+MLKQTGR EMVVGWYHSHPGFGCWLSGVD+NTQQSFE LN RAV++VVDPIQSVKGKVVIDAFR INPQLM+L QEPRQTTSN+GHLNKPSIQALIHGLNRHYYSI IDYRKNELEEQ+
Sbjct:    1 MDRLQRLFGNLPGMQGHGMGGANDSPAVDTAEKVHISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVVCLDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTGRAEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNARAVSIVVDPIQSVKGKVVIDAFRLINPQLMMLGQEPRQTTSNIGHLNKPSIQALIHGLNRHYYSIAIDYRKNELEEQM 219

The following BLAST results are available for this feature:

BLAST of NO11G01440 vs. NCBI_GenBank

BLAST of NO11G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM25063.1	5.300e-120	98.15	26s proteasome non-atpase regulatory subunit 14 [N...	[more]
CBJ49248.1	9.000e-104	87.56	26S proteasome regulatory subunit [Ectocarpus sili...	[more]
XP_009533780.1	1.700e-102	86.70	hypothetical protein PHYSODRAFT_563821 [Phytophtho...	[more]
XP_008915960.1	1.700e-102	86.70	26S proteasome non-ATPase regulatory subunit 14 [P...	[more]
OWZ20393.1	1.700e-102	86.70	26S proteasome non-ATPase regulatory protein [Phyt...	[more]
XP_002902760.1	5.000e-102	86.24	26S proteasome non-ATPase regulatory subunit 14, p...	[more]
XP_009827953.1	5.500e-101	84.93	26S proteasome non-ATPase regulatory subunit 14 [A...	[more]
XP_008614995.1	7.200e-101	84.47	26S proteasome non-ATPase regulatory subunit 14 [S...	[more]
OQR99130.1	1.600e-100	84.40	26S proteasome non-ATPase regulatory subunit 14 [A...	[more]
XP_008867114.1	2.700e-100	84.47	26S proteasome non-ATPase regulatory subunit 14 [A...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL116	nonsL116	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL115	nonsL115	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR010	ncniR010	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR019	ngnoR019	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR018	ngnoR018	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK002120	NSK002120	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO11G01440.3	NO11G01440.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO11G01440.2	NO11G01440.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO11G01440.1	NO11G01440.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591157	gene_5026	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100098g12	gene5427	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO11G01440.3	NO11G01440.3	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO11G01440.2	NO11G01440.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO11G01440.1	NO11G01440.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence
protein sequence

gene sequence

>NO11G01440 ID=NO11G01440|Name=NO11G01440|organism=Nannochloropsis oceanica|type=gene|length=1953bp
AGACCACCACAGGCGCGCAACGACTTCTAAGAGGCCCAGGGACAGGAAAT
CGGCACGTCAGGGAGACGCGACCGCAAGCAGACAACACCAATACCATGCA
TCGCTTGCAAGACCTCTTCCGCAATCTTCAAGgtaaataagctcgggggg
ctttggggtggacgctgttgttgcatatggtgctttcccaggccgcctca
tgctcactctcccctttctcttgcgccatcagGCGGAGGCCAAGTGCCCA
CACCCGACGGGCCTGTTGTGGACACGTCCGAAAAGGTGCATATCAGCTCA
TTGGCGTTGCTCAAGATGCTTAAGCACGGGCGCGCAGGGGTGCCAATGGA
GGTCATGGGCTTGATGCTCGGTAACTTCGTTGACGACTACACTGTGAATT
GCATCGATGTATTTGCCATGCCGCAGTCGGGGACAAGCGTGACGGTGGAG
GCAGTGGACCCAGTGTTTCAGCATAAGATGTTGGAGATGCTCAAGCAGAC
GGGACGGCCTGAGATGGTTGTCGGCTGgtgagtgctgagaggaagtgagg
gagggagagaggaaggggaggagaaaaagtactgggggaacggccgggct
cttaggcaacgcaaacagactcacaaattctgacacgaatttccatcctc
gcaaacatacagGTACCACAGTCACCCCGGATTTGGATGCTGGCTCTCAG
GTGTGGACGTCAACACGCAGCAGgtacgaggaagagagggaggaagcgct
ggaggaggggaggaggggaggacatagtgcattttccacatgttttctgt
gcaagattggaccctgaccctaactatccattctgacctcttagAGCTTC
GAGCAATTGAACCAGCGTGCCGTGGCCGTGGTGGTCGACCCGATCCAGTC
CGTTAAGGGCAAGGTAGTCATCGACGCTTTCAGAACCATCAACCCTCAAC
TCATGTTGCTCAATCAAGAACCGAGGCAGACCACTTCCAACGTCGGTCAC
CTGAACAAGCCCAGTATCCAGGCTTTGATCCACGGGCTGAATCGGCATTA
CTACTCCATTGTGATCGACTACCGCAAGAATGAGCTGGAGGAGCAGgtac
atggggaggaaaggagggaggggggaaggcgaaggaaaaagagagagtgg
gatgatcaaatcattttgtcacttagcgagaggcaacgatagaggcacac
tttttcttacattgtccattcacttcctcgtccctccaccctcccttccc
ccttattttttgttgttgcttcattctccttttctgccctgtagATGCTT
ATGAACCTGCATAAAAAGAGCTGGACGTACGGTTTGAAGCTGCAGCGGTT
TGAGGACCACCACAAGACTAACGAGATGACCGTCGAGgtgagattcggga
gtataagatagaagaacgtgaaggagaagggtgaatgcattgcgattggt
ttcttttgtgtcgtaatggctttaggtagcaaggttaggcctggccattt
ttacaaccgtttatctttcctttcctgcgtatttctttctgtttatttct
acccttcccttccatctagGCCATGCTTAAGCTGAGCAAGGACTACAACG
AACGGGTGCAAGAGGAGGAGGGAAAGACGGCGGAAGAGCGCATCGTTGCC
AACGTTGGGAAGATCGACCCCAAGCGCCACTTGGAGAGTGACGTTGCCGC
ATTGATGGCCAGCAATATCGTCCAATGCCTCGGTGCCATGCTCGATACAA
TCGTCTTTTGAGCAGGAGGGAAGGAAGAAGGGCGGGTTGGGGGCTGGGGG
AAGGGTGGGTGTATAATTGAGGCCTAGCGGCTTGGCACGGATTTGAGGGG
CGTCAAAAAGAAAGAACGAAAATCAGCTACTTTAGTATGTATTGGTAGTC
AGGCATGAGACTTGCAAGCAGCAAAAGAAAGCTAAACATGAAAAAAAGAG
CCA

protein sequence of NO11G01440.3

>NO11G01440.3-protein ID=NO11G01440.3-protein|Name=NO11G01440.3|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MHRLQDLFRNLQGGGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVP
MEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLK
QTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQS
VKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHY
YSIVIDYRKNELEEQVHGEERREGGRRRKKREWDDQIILSLSERQR*

protein sequence of NO11G01440.2

>NO11G01440.2-protein ID=NO11G01440.2-protein|Name=NO11G01440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MHRLQDLFRNLQGGGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVP
MEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLK
QTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQS
VKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHY
YSIVIDYRKNELEEQMLMNLHKKSWTYGLKLQRFEDHHKTNEMTVEVRFG
SIR*

protein sequence of NO11G01440.1

>NO11G01440.1-protein ID=NO11G01440.1-protein|Name=NO11G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MHRLQDLFRNLQGGGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVP
MEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLK
QTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQS
VKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHY
YSIVIDYRKNELEEQMLMNLHKKSWTYGLKLQRFEDHHKTNEMTVEAMLK
LSKDYNERVQEEEGKTAEERIVANVGKIDPKRHLESDVAALMASNIVQCL
GAMLDTIVF*

Synonyms

Publications