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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:486727..488679 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01440.1 vs.
Match: EWM25063.1 (26s proteasome non-atpase regulatory subunit 14 [Nannochloropsis gaditana]) HSP 1 Score: 599.4 bits (1544), Expect = 6.500e-168 Identity = 292/309 (94.50%), Postives = 303/309 (98.06%), Query Frame = 0
Query: 1 MHRLQDLFRNLQGGGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQMLMNLHKKSWTYGLKLQRFEDHHKTNEMTVEAMLKLSKDYNERVQEEEGKTAEERIVANVGKIDPKRHLESDVAALMASNIVQCLGAMLDTIVF 310
MHRLQDLFRNLQGGGQVPTPDGPVVD+SEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVV+DPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSN+GHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQMLMNLHKKSWT+GL +QRFEDHH+ NE T+EAMLKLSKDYNERV+EEEGKTAE+ +V NVGKIDPKRHL+SDVA LMASNIVQCLGAMLDTIVF
Sbjct: 1 MHRLQDLFRNLQGGGQVPTPDGPVVDSSEKVHISSLALLKMLKHGRAGVPMEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLKQTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVIDPIQSVKGKVVIDAFRTINPQLMLLNQEPRQTTSNIGHLNKPSIQALIHGLNRHYYSIVIDYRKNELEEQMLMNLHKKSWTHGLNMQRFEDHHRANETTIEAMLKLSKDYNERVKEEEGKTAEQLLVGNVGKIDPKRHLDSDVATLMASNIVQCLGAMLDTIVF 309
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01440.1 ID=NO11G01440.1|Name=NO11G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp
AGACCACCACAGGCGCGCAACGACTTCTAAGAGGCCCAGGGACAGGAAAT
CGGCACGTCAGGGAGACGCGACCGCAAGCAGACAACACCAATACCATGCA
TCGCTTGCAAGACCTCTTCCGCAATCTTCAAGGCGGAGGCCAAGTGCCCA
CACCCGACGGGCCTGTTGTGGACACGTCCGAAAAGGTGCATATCAGCTCA
TTGGCGTTGCTCAAGATGCTTAAGCACGGGCGCGCAGGGGTGCCAATGGA
GGTCATGGGCTTGATGCTCGGTAACTTCGTTGACGACTACACTGTGAATT
GCATCGATGTATTTGCCATGCCGCAGTCGGGGACAAGCGTGACGGTGGAG
GCAGTGGACCCAGTGTTTCAGCATAAGATGTTGGAGATGCTCAAGCAGAC
GGGACGGCCTGAGATGGTTGTCGGCTGGTACCACAGTCACCCCGGATTTG
GATGCTGGCTCTCAGGTGTGGACGTCAACACGCAGCAGAGCTTCGAGCAA
TTGAACCAGCGTGCCGTGGCCGTGGTGGTCGACCCGATCCAGTCCGTTAA
GGGCAAGGTAGTCATCGACGCTTTCAGAACCATCAACCCTCAACTCATGT
TGCTCAATCAAGAACCGAGGCAGACCACTTCCAACGTCGGTCACCTGAAC
AAGCCCAGTATCCAGGCTTTGATCCACGGGCTGAATCGGCATTACTACTC
CATTGTGATCGACTACCGCAAGAATGAGCTGGAGGAGCAGATGCTTATGA
ACCTGCATAAAAAGAGCTGGACGTACGGTTTGAAGCTGCAGCGGTTTGAG
GACCACCACAAGACTAACGAGATGACCGTCGAGGCCATGCTTAAGCTGAG
CAAGGACTACAACGAACGGGTGCAAGAGGAGGAGGGAAAGACGGCGGAAG
AGCGCATCGTTGCCAACGTTGGGAAGATCGACCCCAAGCGCCACTTGGAG
AGTGACGTTGCCGCATTGATGGCCAGCAATATCGTCCAATGCCTCGGTGC
CATGCTCGATACAATCGTCTTTTGAGCAGGAGGGAAGGAAGAAGGGCGGG
TTGGGGGCTGGGGGAAGGGTGGGTGTATAATTGAGGCCTAGCGGCTTGGC
ACGGATTTGAGGGGCGTCAAAAAGAAAGAACGAAAATCAGCTACTTTAGT
ATGTATTGGTAGTCAGGCATGAGACTTGCAAGCAGCAAAAGAAAGCTAAA
CATGAAAAAAAGAGCCA back to topprotein sequence of NO11G01440.1 >NO11G01440.1-protein ID=NO11G01440.1-protein|Name=NO11G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MHRLQDLFRNLQGGGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVP
MEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLK
QTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQS
VKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHY
YSIVIDYRKNELEEQMLMNLHKKSWTYGLKLQRFEDHHKTNEMTVEAMLK
LSKDYNERVQEEEGKTAEERIVANVGKIDPKRHLESDVAALMASNIVQCL
GAMLDTIVF* back to topmRNA from alignment at chr11:486727..488679- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01440.1 ID=NO11G01440.1|Name=NO11G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at chr11:486727..488679- (Nannochloropsis oceanica)
AGACCACCACAGGCGCGCAACGACTTCTAAGAGGCCCAGGGACAGGAAAT
CGGCACGTCAGGGAGACGCGACCGCAAGCAGACAACACCAATACCATGCA
TCGCTTGCAAGACCTCTTCCGCAATCTTCAAGGTAAATAAGCTCGGGGGG
CTTTGGGGTGGACGCTGTTGTTGCATATGGTGCTTTCCCAGGCCGCCTCA
TGCTCACTCTCCCCTTTCTCTTGCGCCATCAGGCGGAGGCCAAGTGCCCA
CACCCGACGGGCCTGTTGTGGACACGTCCGAAAAGGTGCATATCAGCTCA
TTGGCGTTGCTCAAGATGCTTAAGCACGGGCGCGCAGGGGTGCCAATGGA
GGTCATGGGCTTGATGCTCGGTAACTTCGTTGACGACTACACTGTGAATT
GCATCGATGTATTTGCCATGCCGCAGTCGGGGACAAGCGTGACGGTGGAG
GCAGTGGACCCAGTGTTTCAGCATAAGATGTTGGAGATGCTCAAGCAGAC
GGGACGGCCTGAGATGGTTGTCGGCTGGTGAGTGCTGAGAGGAAGTGAGG
GAGGGAGAGAGGAAGGGGAGGAGAAAAAGTACTGGGGGAACGGCCGGGCT
CTTAGGCAACGCAAACAGACTCACAAATTCTGACACGAATTTCCATCCTC
GCAAACATACAGGTACCACAGTCACCCCGGATTTGGATGCTGGCTCTCAG
GTGTGGACGTCAACACGCAGCAGGTACGAGGAAGAGAGGGAGGAAGCGCT
GGAGGAGGGGAGGAGGGGAGGACATAGTGCATTTTCCACATGTTTTCTGT
GCAAGATTGGACCCTGACCCTAACTATCCATTCTGACCTCTTAGAGCTTC
GAGCAATTGAACCAGCGTGCCGTGGCCGTGGTGGTCGACCCGATCCAGTC
CGTTAAGGGCAAGGTAGTCATCGACGCTTTCAGAACCATCAACCCTCAAC
TCATGTTGCTCAATCAAGAACCGAGGCAGACCACTTCCAACGTCGGTCAC
CTGAACAAGCCCAGTATCCAGGCTTTGATCCACGGGCTGAATCGGCATTA
CTACTCCATTGTGATCGACTACCGCAAGAATGAGCTGGAGGAGCAGGTAC
ATGGGGAGGAAAGGAGGGAGGGGGGAAGGCGAAGGAAAAAGAGAGAGTGG
GATGATCAAATCATTTTGTCACTTAGCGAGAGGCAACGATAGAGGCACAC
TTTTTCTTACATTGTCCATTCACTTCCTCGTCCCTCCACCCTCCCTTCCC
CCTTATTTTTTGTTGTTGCTTCATTCTCCTTTTCTGCCCTGTAGATGCTT
ATGAACCTGCATAAAAAGAGCTGGACGTACGGTTTGAAGCTGCAGCGGTT
TGAGGACCACCACAAGACTAACGAGATGACCGTCGAGGTGAGATTCGGGA
GTATAAGATAGAAGAACGTGAAGGAGAAGGGTGAATGCATTGCGATTGGT
TTCTTTTGTGTCGTAATGGCTTTAGGTAGCAAGGTTAGGCCTGGCCATTT
TTACAACCGTTTATCTTTCCTTTCCTGCGTATTTCTTTCTGTTTATTTCT
ACCCTTCCCTTCCATCTAGGCCATGCTTAAGCTGAGCAAGGACTACAACG
AACGGGTGCAAGAGGAGGAGGGAAAGACGGCGGAAGAGCGCATCGTTGCC
AACGTTGGGAAGATCGACCCCAAGCGCCACTTGGAGAGTGACGTTGCCGC
ATTGATGGCCAGCAATATCGTCCAATGCCTCGGTGCCATGCTCGATACAA
TCGTCTTTTGAGCAGGAGGGAAGGAAGAAGGGCGGGTTGGGGGCTGGGGG
AAGGGTGGGTGTATAATTGAGGCCTAGCGGCTTGGCACGGATTTGAGGGG
CGTCAAAAAGAAAGAACGAAAATCAGCTACTTTAGTATGTATTGGTAGTC
AGGCATGAGACTTGCAAGCAGCAAAAGAAAGCTAAACATGAAAAAAAGAG
CCA back to topCoding sequence (CDS) from alignment at chr11:486727..488679- >NO11G01440.1 ID=NO11G01440.1|Name=NO11G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr11:486727..488679- (Nannochloropsis oceanica)
ATGCATCGCTTGCAAGACCTCTTCCGCAATCTTCAAGGCGGAGGCCAAGT
GCCCACACCCGACGGGCCTGTTGTGGACACGTCCGAAAAGGTGCATATCA
GCTCATTGGCGTTGCTCAAGATGCTTAAGCACGGGCGCGCAGGGGTGCCA
ATGGAGGTCATGGGCTTGATGCTCGGTAACTTCGTTGACGACTACACTGT
GAATTGCATCGATGTATTTGCCATGCCGCAGTCGGGGACAAGCGTGACGG
TGGAGGCAGTGGACCCAGTGTTTCAGCATAAGATGTTGGAGATGCTCAAG
CAGACGGGACGGCCTGAGATGGTTGTCGGCTGGTACCACAGTCACCCCGG
ATTTGGATGCTGGCTCTCAGGTGTGGACGTCAACACGCAGCAGAGCTTCG
AGCAATTGAACCAGCGTGCCGTGGCCGTGGTGGTCGACCCGATCCAGTCC
GTTAAGGGCAAGGTAGTCATCGACGCTTTCAGAACCATCAACCCTCAACT
CATGTTGCTCAATCAAGAACCGAGGCAGACCACTTCCAACGTCGGTCACC
TGAACAAGCCCAGTATCCAGGCTTTGATCCACGGGCTGAATCGGCATTAC
TACTCCATTGTGATCGACTACCGCAAGAATGAGCTGGAGGAGCAGATGCT
TATGAACCTGCATAAAAAGAGCTGGACGTACGGTTTGAAGCTGCAGCGGT
TTGAGGACCACCACAAGACTAACGAGATGACCGTCGAGGCCATGCTTAAG
CTGAGCAAGGACTACAACGAACGGGTGCAAGAGGAGGAGGGAAAGACGGC
GGAAGAGCGCATCGTTGCCAACGTTGGGAAGATCGACCCCAAGCGCCACT
TGGAGAGTGACGTTGCCGCATTGATGGCCAGCAATATCGTCCAATGCCTC
GGTGCCATGCTCGATACAATCGTCTTTTGA back to top
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