NO11G01350, NO11G01350 (gene) Nannochloropsis oceanica

Overview
NameNO11G01350
Unique NameNO11G01350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1614
Alignment locationchr11:470146..471759 +

Link to JBrowse

Properties
Property NameValue
DescriptionNse1 non-SMC component of SMC5-6 complex
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:470146..471759 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030915Smc5-Smc6 complex
GO:0030915Smc5-Smc6 complex
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006281DNA repair
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011513Nse1
Homology
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BLAST of NO11G01350 vs. NCBI_GenBank
Match: XP_005852735.1 (dna repair protein nse1 [Nannochloropsis gaditana CCMP526] >EKU23097.1 dna repair protein nse1 [Nannochloropsis gaditana CCMP526] >EWM25068.1 Nse1 non-SMC component of SMC5-6 complex [Nannochloropsis gaditana])

HSP 1 Score: 250.0 bits (637), Expect = 6.200e-63
Identity = 124/194 (63.92%), Postives = 154/194 (79.38%), Query Frame = 0 
Query:    4 NGTSSLEARQAFLQLLMSRKVMNQKEVEDAFAMLSETLNLRGYMAQSEIKSCLSELNKDLHECNLQIKGMLLNGTEVYAIVNILSDEVAKLHASKMKDWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTRVCAPREKEAVLYLLEAEFWLQKDKHARLSLGPRTFLELSDFVRAHEMEMPQILYF 198
            +  S++EARQAFLQLLMSRKVM   +  +A AM+SE LN++    Q ++KSCL+ LNK+L  CNLQI+GM+   +E YA+VN+LSD+V+K+HASKMKDWEKAYFKEVI+ IC  GG+ V+ DELTALRV +GGTA      + REK +VL LL AEFWLQ+DKH R +LGPRTFLEL DFVRAHEMEMPQ+LY+
Sbjct:    8 SAASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQD---QLDVKSCLANLNKELQNCNLQIRGMVHQDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTA-----ASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193
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BLAST of NO11G01350 vs. NCBI_GenBank
Match: CBN77844.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.4 bits (189), Expect = 5.500e-11
Identity = 53/194 (27.32%), Postives = 101/194 (52.06%), Query Frame = 0 
Query:   10 EARQAFLQLLMSRKVMNQKEVEDAFAMLSETLNLRGYMAQSEIKSCLSELNKDLHECNLQIKGMLL---NGTEVYAIVNILSDEVAKLHASKMKDWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTRVCAPREKEAVLYL---LEAEFWLQK-DKHARLSLGPRTFLELSDFVRAHEMEMPQILY 197
            E  QAF Q+LM+RKVM+Q E + A   L  +    G +A + +   +S+++K L   ++ ++ M     NG   +  +N  +DE+AKLH SK++DW+   F+ +I    ++    ++  +L  L   +      T+     ++E +      L  +FWL +        LG RT++EL + ++  ++E+PQ+++
Sbjct:    6 EPLQAFAQILMARKVMSQDEAQKA---LDVSYQRFGELAFT-LDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQGLTEHI-----KTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIH 190
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BLAST of NO11G01350 vs. NCBI_GenBank
Match: KIK23399.1 (hypothetical protein PISMIDRAFT_459839 [Pisolithus microcarpus 441])

HSP 1 Score: 67.4 bits (163), Expect = 5.700e-8
Identity = 54/190 (28.42%), Postives = 94/190 (49.47%), Query Frame = 0 
Query:    7 SSLEARQAFLQLLMSRKVMNQ-------KEVEDAFAMLSETLNLRGYMAQSEIKSCLSELNKDLHECNLQIKGMLLN--GTEVYAIVNILSDEVAKLHASKMKDWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTRVCAPREKEAVLYLLEAEFWLQKDKHARLSLGPRTFLELSDFVRAH 188
            +S + ++ FLQ + SR +++        K+  DA    +  L++R    + E  + ++ +N  L+  +L+ + +L    G E+YA+VN   DE+A++ A+     E AYF+ V+  I     +      L ALR         T+     + E+VL  L A  WL K K  R SL  R+ LELS +++++
Sbjct:    3 ASSDVQRLFLQAVFSRGILSYSHALVLWKKCVDAVKAANPVLDVRASERREEWDAFVNRINDALNPLDLEFRHVLDEEAGKEMYAVVNTRGDEIAQM-ATDYTPAEIAYFRAVVEQIMLAPNECYSLSSLAALREVNALKTNMTK----SQAESVLGSLVARGWLLKSKRGRYSLSTRSLLELSPYLKSN 187
[Close]
BLAST of NO11G01350 vs. NCBI_GenBank
Match: KNZ74205.1 (Non-structural maintenance of chromosomes element 1 like protein [Termitomyces sp. J132])

HSP 1 Score: 65.9 bits (159), Expect = 1.700e-7
Identity = 52/188 (27.66%), Postives = 94/188 (50.00%), Query Frame = 0 
Query:    7 SSLEARQAFLQLLMSRKVMNQKEVE-------DAFAMLSETLNLRGYMAQSEIKSCLSELNKDLHECNLQIKGM--LLNGTEVYAIVNILSDEVAKLHASKMKDWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTRVCAPREKEAVLYLLEAEFWLQKDKHARLSLGPRTFLELSDFVR 186
            SS + ++ F+Q ++SR ++++   +       DA       L LR    +      ++++N+ L   +L+ + +    +GT++YA+VN   DE+A++ A++    E A+FK ++  I              ALR +V    P T + +  + EAVL    A+ WL K K  R SL  R+ LELS +++
Sbjct:    5 SSDDVQRVFIQAILSRAIVSRNLAQILWEKSIDAVNAAKPELELRLPTGRDAWDEFVTKINRSLDSLDLEFRHLHDENSGTQMYALVNRKGDEIAQM-ATEYTAAEIAFFKAIVELIMLAPRHSFSVSSTAALR-EVSAIRPKTNM-SKSQAEAVLGSFVAQKWLTKSKRGRYSLSTRSLLELSPYLK 189
The following BLAST results are available for this feature:
BLAST of NO11G01350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005852735.16.200e-6363.92dna repair protein nse1 [Nannochloropsis gaditana ... [more]
CBN77844.15.500e-1127.32expressed unknown protein [Ectocarpus siliculosus][more]
KIK23399.15.700e-828.42hypothetical protein PISMIDRAFT_459839 [Pisolithus... [more]
KNZ74205.11.700e-727.66Non-structural maintenance of chromosomes element ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002130NSK002130Nannochloropsis salina (N. salina CCMP1776)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01350.1NO11G01350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G01350.2NO11G01350.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G01350.3NO11G01350.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G01350.4NO11G01350.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G01350.5NO11G01350.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G01350.6NO11G01350.6Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01350.1NO11G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G01350.2NO11G01350.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G01350.3NO11G01350.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G01350.4NO11G01350.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G01350.5NO11G01350.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G01350.6NO11G01350.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591126gene_5018Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100098g2gene5417Nannochloropsis gaditana (N. gaditana B-31)gene


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01350 ID=NO11G01350|Name=NO11G01350|organism=Nannochloropsis oceanica|type=gene|length=1614bp
ACAACAGACATTATATATCCGCCAAATCTTGCCGGAGGCCAAAACAGTCC
ACAGCAGCACGGGATGCATACAGCGTCATACCGGGCCGCATGCCACCCTT
CTTCGCTTCTTTCTTCTACGACTCTTGACGATCCCACCACACGCATCTCG
CGCACCGCAGGCCAATAGGAGCCATGGCCCTTAACGGCACGTCATCCTTG
GAGGCGCGCCAAGCCTTCTTGCAGCTTCTTATGgtaagcacgcactcgtc
atctctcatttttctcctgcagcgacaaggaacttattcatctcaccaag
gcgcccattcttcgcaaccccaccagAGCCGCAAGGTCATGAACCAGAAA
GAGGTGGAAGATGCGTTCGCCATGTTGTCGGAAACGCTGAACTTGCGCGG
CTACATGGgtgagtgtgagaggagaaagcgaagggctttgcatgtcctta
gataccttcactccccccccgtccctcccggggtcctcacaaaacccctt
ctctaacctcaaagCACAATCAGAGATCAAATCGTGCCTATCCGAGTTGA
ACAAAGATTTGCATGAGTGCAATTTGCAAATCAAGGGGATGCTTCTGAAC
GGCACCGAGGTTTATGCCATTGTCAACATTgtgcgtaggggaggcaggga
aagagggaacgggtgaggggagagagggaatgaagggatgtgtgtctttc
cacattgatcgcgtcatgatgtgtgtctttccacattgatcgcgtcataa
catcttcctcaccattctgtctcatatttttgattttacagTTGAGCGAC
GAAGTGGCCAAGCTGCATGCGTCCAAGATGAAAGACTGgttcgttttggg
gagagacgtggaaaacgacattctgtcgctgcatttcatgaatatacgct
tgtatgttttctcgccaagtctctttcgtgcctttttcctgtatactcag
ctttcagggaattcatgcgcaccaattgtacccattcccacagGGAGAAG
GCTTATTTTAAGGAGGTAATAAGGACAATCTGCGAGAACGGCGGAGACCC
TGTTGACAAGGACGAGCTGACCGCGTTGCGTGTGCAAGTCGGGGGAACAG
CGCCATATACTCGAGTATGTGCACCGAGGGTAGGGAAGGAAGTAAGGGAG
GATTGAAAAAAGACACATCATGTTGTATGCTAACGTCCAACATTCCAATA
GGAGAAGGAAGCAGTGCTCTATTTGTTGGAGGCAGAATTCTGGTTACAGG
TATGAATTATATACTCTTTACTCTCCTACCTTTTACTTGGTTCATCCGCT
CTCTCCTATCATCCCTGACATCACAGAAGGATAAGCACGCCCGCCTATCA
TTGGGGCCGCGGACTTTCCTTGAGCTGAGTGACTTTGTGCGGGCCCACGA
GATGGAGATGCCTCAAATCCTCTACTTCTAAGGAACAAAAGAGCGGAAAA
GTACGGGAGTTAGGAAAAAACACGAACTGTTATTGATTGGTGTCAGTGTA
TGTGTAAGTCCAGAGAGGTTGGCGAGTGGATTTTGGAAGACAGGGAAAAT
ACTGAAAGCGCAGATTGTGAGGCTAATTTACGGCTCAAAGAAAGAAAAGC
ATGTACATGTAGCA
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protein sequence of NO11G01350.1

>NO11G01350.1-protein ID=NO11G01350.1-protein|Name=NO11G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MALNGTSSLEARQAFLQLLMSRKVMNQKEVEDAFAMLSETLNLRGYMAQS
EIKSCLSELNKDLHECNLQIKGMLLNGTEVYAIVNILSDEVAKLHASKMK
DWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTREKEAVLYL
LEAEFWLQKDKHARLSLGPRTFLELSDFVRAHEMEMPQILYF*
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protein sequence of NO11G01350.2

>NO11G01350.2-protein ID=NO11G01350.2-protein|Name=NO11G01350.2|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MALNGTSSLEARQAFLQLLMSRKVMNQKEVEDAFAMLSETLNLRGYMAQS
EIKSCLSELNKDLHECNLQIKGMLLNGTEVYAIVNILSDEVAKLHASKMK
DWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTRVCAPREKE
AVLYLLEAEFWLQKDKHARLSLGPRTFLELSDFVRAHEMEMPQILYF*
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protein sequence of NO11G01350.3

>NO11G01350.3-protein ID=NO11G01350.3-protein|Name=NO11G01350.3|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MSLDTFTPPPSLPGSSQNPFSNLKAQSEIKSCLSELNKDLHECNLQIKGM
LLNGTEVYAIVNILSDEVAKLHASKMKDWEKAYFKEVIRTICENGGDPVD
KDELTALRVQVGGTAPYTREKEAVLYLLEAEFWLQKDKHARLSLGPRTFL
ELSDFVRAHEMEMPQILYF*
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protein sequence of NO11G01350.4

>NO11G01350.4-protein ID=NO11G01350.4-protein|Name=NO11G01350.4|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MALNGTSSLEARQAFLQLLMSRKVMNQKEVEDAFAMLSETLNLRGYMAQS
EIKSCLSELNKDLHECNLQIKGMLLNGTEVYAIVNILSDEVAKLHASKMK
DWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTRVCAPRVGK
EVRED*
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protein sequence of NO11G01350.5

>NO11G01350.5-protein ID=NO11G01350.5-protein|Name=NO11G01350.5|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MALNGTSSLEARQAFLQLLMSRKVMNQKEVEDAFAMLSETLNLRGYMAQS
EIKSCLSELNKDLHECNLQIKGMLLNGTEVYAIVNILSDEVAKLHASKMK
DWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTREKEAVLYL
LEAEFWLQV*
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protein sequence of NO11G01350.6

>NO11G01350.6-protein ID=NO11G01350.6-protein|Name=NO11G01350.6|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MALNGTSSLEARQAFLQLLMSRKVMNQKEVEDAFAMLSETLNLRGYMAQS
EIKSCLSELNKDLHECNLQIKGMLLNGTEVYAIVNILSDEVAKLHASKMK
DWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTRVCAPRVGK
EVRED*
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Synonyms
Publications