NO11G01350.2, NO11G01350.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01350.2
Unique NameNO11G01350.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length950
Alignment locationchr11:470146..471759 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:470146..471759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01350.2 vs.
Match: XP_005852735.1 (dna repair protein nse1 [Nannochloropsis gaditana CCMP526]; EKU23097.1 dna repair protein nse1 [Nannochloropsis gaditana CCMP526]; EWM25068.1 Nse1 non-SMC component of SMC5-6 complex [Nannochloropsis gaditana])

HSP 1 Score: 250.0 bits (637), Expect = 6.200e-63
Identity = 124/194 (63.92%), Postives = 154/194 (79.38%), Query Frame = 0 
Query:    4 NGTSSLEARQAFLQLLMSRKVMNQKEVEDAFAMLSETLNLRGYMAQSEIKSCLSELNKDLHECNLQIKGMLLNGTEVYAIVNILSDEVAKLHASKMKDWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTRVCAPREKEAVLYLLEAEFWLQKDKHARLSLGPRTFLELSDFVRAHEMEMPQILYF 198
            +  S++EARQAFLQLLMSRKVM   +  +A AM+SE LN++    Q ++KSCL+ LNK+L  CNLQI+GM+   +E YA+VN+LSD+V+K+HASKMKDWEKAYFKEVI+ IC  GG+ V+ DELTALRV +GGTA      + REK +VL LL AEFWLQ+DKH R +LGPRTFLEL DFVRAHEMEMPQ+LY+
Sbjct:    8 SAASAVEARQAFLQLLMSRKVMTHSQAANALAMISEELNVQD---QLDVKSCLANLNKELQNCNLQIRGMVHQDSEAYAVVNVLSDDVSKMHASKMKDWEKAYFKEVIKAICGRGGNFVEDDELTALRVPIGGTA-----ASVREKRSVLSLLSAEFWLQRDKHGRFALGPRTFLELDDFVRAHEMEMPQVLYY 193
The following BLAST results are available for this feature:
BLAST of NO11G01350.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852735.16.200e-6363.92dna repair protein nse1 [Nannochloropsis gaditana ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01350NO11G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01350.2NO11G01350.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01350.2.cds1NO11G01350.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01350.2.cds2NO11G01350.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01350.2.cds3NO11G01350.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01350.2.cds4NO11G01350.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01350.2.cds5NO11G01350.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01350.2.cds6NO11G01350.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01350.2.cds7NO11G01350.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01350.2 ID=NO11G01350.2|Name=NO11G01350.2|organism=Nannochloropsis oceanica|type=mRNA|length=950bp
ACAACAGACATTATATATCCGCCAAATCTTGCCGGAGGCCAAAACAGTCC
ACAGCAGCACGGGATGCATACAGCGTCATACCGGGCCGCATGCCACCCTT
CTTCGCTTCTTTCTTCTACGACTCTTGACGATCCCACCACACGCATCTCG
CGCACCGCAGGCCAATAGGAGCCATGGCCCTTAACGGCACGTCATCCTTG
GAGGCGCGCCAAGCCTTCTTGCAGCTTCTTATGAGCCGCAAGGTCATGAA
CCAGAAAGAGGTGGAAGATGCGTTCGCCATGTTGTCGGAAACGCTGAACT
TGCGCGGCTACATGGCACAATCAGAGATCAAATCGTGCCTATCCGAGTTG
AACAAAGATTTGCATGAGTGCAATTTGCAAATCAAGGGGATGCTTCTGAA
CGGCACCGAGGTTTATGCCATTGTCAACATTTTGAGCGACGAAGTGGCCA
AGCTGCATGCGTCCAAGATGAAAGACTGGGAGAAGGCTTATTTTAAGGAG
GTAATAAGGACAATCTGCGAGAACGGCGGAGACCCTGTTGACAAGGACGA
GCTGACCGCGTTGCGTGTGCAAGTCGGGGGAACAGCGCCATATACTCGAG
TATGTGCACCGAGGGAGAAGGAAGCAGTGCTCTATTTGTTGGAGGCAGAA
TTCTGGTTACAGAAGGATAAGCACGCCCGCCTATCATTGGGGCCGCGGAC
TTTCCTTGAGCTGAGTGACTTTGTGCGGGCCCACGAGATGGAGATGCCTC
AAATCCTCTACTTCTAAGGAACAAAAGAGCGGAAAAGTACGGGAGTTAGG
AAAAAACACGAACTGTTATTGATTGGTGTCAGTGTATGTGTAAGTCCAGA
GAGGTTGGCGAGTGGATTTTGGAAGACAGGGAAAATACTGAAAGCGCAGA
TTGTGAGGCTAATTTACGGCTCAAAGAAAGAAAAGCATGTACATGTAGCA
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protein sequence of NO11G01350.2

>NO11G01350.2-protein ID=NO11G01350.2-protein|Name=NO11G01350.2|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MALNGTSSLEARQAFLQLLMSRKVMNQKEVEDAFAMLSETLNLRGYMAQS
EIKSCLSELNKDLHECNLQIKGMLLNGTEVYAIVNILSDEVAKLHASKMK
DWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTRVCAPREKE
AVLYLLEAEFWLQKDKHARLSLGPRTFLELSDFVRAHEMEMPQILYF*
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mRNA from alignment at chr11:470146..471759+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01350.2 ID=NO11G01350.2|Name=NO11G01350.2|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp|location=Sequence derived from alignment at chr11:470146..471759+ (Nannochloropsis oceanica)
ACAACAGACATTATATATCCGCCAAATCTTGCCGGAGGCCAAAACAGTCC
ACAGCAGCACGGGATGCATACAGCGTCATACCGGGCCGCATGCCACCCTT
CTTCGCTTCTTTCTTCTACGACTCTTGACGATCCCACCACACGCATCTCG
CGCACCGCAGGCCAATAGGAGCCATGGCCCTTAACGGCACGTCATCCTTG
GAGGCGCGCCAAGCCTTCTTGCAGCTTCTTATGGTAAGCACGCACTCGTC
ATCTCTCATTTTTCTCCTGCAGCGACAAGGAACTTATTCATCTCACCAAG
GCGCCCATTCTTCGCAACCCCACCAGAGCCGCAAGGTCATGAACCAGAAA
GAGGTGGAAGATGCGTTCGCCATGTTGTCGGAAACGCTGAACTTGCGCGG
CTACATGGGTGAGTGTGAGAGGAGAAAGCGAAGGGCTTTGCATGTCCTTA
GATACCTTCACTCCCCCCCCGTCCCTCCCGGGGTCCTCACAAAACCCCTT
CTCTAACCTCAAAGCACAATCAGAGATCAAATCGTGCCTATCCGAGTTGA
ACAAAGATTTGCATGAGTGCAATTTGCAAATCAAGGGGATGCTTCTGAAC
GGCACCGAGGTTTATGCCATTGTCAACATTGTGCGTAGGGGAGGCAGGGA
AAGAGGGAACGGGTGAGGGGAGAGAGGGAATGAAGGGATGTGTGTCTTTC
CACATTGATCGCGTCATGATGTGTGTCTTTCCACATTGATCGCGTCATAA
CATCTTCCTCACCATTCTGTCTCATATTTTTGATTTTACAGTTGAGCGAC
GAAGTGGCCAAGCTGCATGCGTCCAAGATGAAAGACTGGTTCGTTTTGGG
GAGAGACGTGGAAAACGACATTCTGTCGCTGCATTTCATGAATATACGCT
TGTATGTTTTCTCGCCAAGTCTCTTTCGTGCCTTTTTCCTGTATACTCAG
CTTTCAGGGAATTCATGCGCACCAATTGTACCCATTCCCACAGGGAGAAG
GCTTATTTTAAGGAGGTAATAAGGACAATCTGCGAGAACGGCGGAGACCC
TGTTGACAAGGACGAGCTGACCGCGTTGCGTGTGCAAGTCGGGGGAACAG
CGCCATATACTCGAGTATGTGCACCGAGGGTAGGGAAGGAAGTAAGGGAG
GATTGAAAAAAGACACATCATGTTGTATGCTAACGTCCAACATTCCAATA
GGAGAAGGAAGCAGTGCTCTATTTGTTGGAGGCAGAATTCTGGTTACAGG
TATGAATTATATACTCTTTACTCTCCTACCTTTTACTTGGTTCATCCGCT
CTCTCCTATCATCCCTGACATCACAGAAGGATAAGCACGCCCGCCTATCA
TTGGGGCCGCGGACTTTCCTTGAGCTGAGTGACTTTGTGCGGGCCCACGA
GATGGAGATGCCTCAAATCCTCTACTTCTAAGGAACAAAAGAGCGGAAAA
GTACGGGAGTTAGGAAAAAACACGAACTGTTATTGATTGGTGTCAGTGTA
TGTGTAAGTCCAGAGAGGTTGGCGAGTGGATTTTGGAAGACAGGGAAAAT
ACTGAAAGCGCAGATTGTGAGGCTAATTTACGGCTCAAAGAAAGAAAAGC
ATGTACATGTAGCA
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Coding sequence (CDS) from alignment at chr11:470146..471759+

>NO11G01350.2 ID=NO11G01350.2|Name=NO11G01350.2|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr11:470146..471759+ (Nannochloropsis oceanica)
ATGGCCCTTAACGGCACGTCATCCTTGGAGGCGCGCCAAGCCTTCTTGCA
GCTTCTTATGAGCCGCAAGGTCATGAACCAGAAAGAGGTGGAAGATGCGT
TCGCCATGTTGTCGGAAACGCTGAACTTGCGCGGCTACATGGCACAATCA
GAGATCAAATCGTGCCTATCCGAGTTGAACAAAGATTTGCATGAGTGCAA
TTTGCAAATCAAGGGGATGCTTCTGAACGGCACCGAGGTTTATGCCATTG
TCAACATTTTGAGCGACGAAGTGGCCAAGCTGCATGCGTCCAAGATGAAA
GACTGGGAGAAGGCTTATTTTAAGGAGGTAATAAGGACAATCTGCGAGAA
CGGCGGAGACCCTGTTGACAAGGACGAGCTGACCGCGTTGCGTGTGCAAG
TCGGGGGAACAGCGCCATATACTCGAGTATGTGCACCGAGGGAGAAGGAA
GCAGTGCTCTATTTGTTGGAGGCAGAATTCTGGTTACAGAAGGATAAGCA
CGCCCGCCTATCATTGGGGCCGCGGACTTTCCTTGAGCTGAGTGACTTTG
TGCGGGCCCACGAGATGGAGATGCCTCAAATCCTCTACTTCTAA
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Synonyms
Publications