NO11G00850, NO11G00850 (gene) Nannochloropsis oceanica

Overview
NameNO11G00850
Unique NameNO11G00850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr11:336952..337455 -

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Properties
Property NameValue
DescriptionInactive ubiquitin carboxyl-terminal hydrolase 54
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:336952..337455 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
Homology
[Close]
BLAST of NO11G00850 vs. NCBI_GenBank
Match: XP_005856289.1 (ubiquitin specific peptidase 54, partial [Nannochloropsis gaditana CCMP526] >EKU20069.1 ubiquitin specific peptidase 54, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 225.7 bits (574), Expect = 1.100e-55
Identity = 104/165 (63.03%), Postives = 124/165 (75.15%), Query Frame = 0 
Query:    1 MALDFGALLQGAGSGDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFSLGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQRECVGVLKGFFAFHPQKHHYVAFFFHPGAGWVCLDDGVGKMLGPTHVEALRQCAEEHYQPTLLFYEVD 166
            + LDFG+LLQ AGSGDLYRC NTE C  ARRGEK AGHRYLV   P VFSLGLVWDSLK DP +TQALI L++  + L HFKLP++ Q      +QQ E +GVL+GFFAFHPQKHHYV+F  + G GWVC+DDG    LGP   +AL++C E+ YQP+LLFYE +
Sbjct: 1639 VGLDFGSLLQDAGSGDLYRCRNTEACPIARRGEKRAGHRYLVRGPPSVFSLGLVWDSLKADPRDTQALIDLLSSTICLKHFKLPVEHQG-DDDVEQQGEMIGVLRGFFAFHPQKHHYVSFLLYDGTGWVCVDDGRAYALGPHLSDALKECTEQQYQPSLLFYEAN 1802
[Close]
BLAST of NO11G00850 vs. NCBI_GenBank
Match: EWM25089.1 (inactive ubiquitin carboxyl-terminal hydrolase 54 [Nannochloropsis gaditana])

HSP 1 Score: 225.7 bits (574), Expect = 1.100e-55
Identity = 104/165 (63.03%), Postives = 124/165 (75.15%), Query Frame = 0 
Query:    1 MALDFGALLQGAGSGDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFSLGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQRECVGVLKGFFAFHPQKHHYVAFFFHPGAGWVCLDDGVGKMLGPTHVEALRQCAEEHYQPTLLFYEVD 166
            + LDFG+LLQ AGSGDLYRC NTE C  ARRGEK AGHRYLV   P VFSLGLVWDSLK DP +TQALI L++  + L HFKLP++ Q      +QQ E +GVL+GFFAFHPQKHHYV+F  + G GWVC+DDG    LGP   +AL++C E+ YQP+LLFYE +
Sbjct:  474 VGLDFGSLLQDAGSGDLYRCRNTEACPIARRGEKRAGHRYLVRGPPSVFSLGLVWDSLKADPRDTQALIDLLSSTICLKHFKLPVEHQG-DDDVEQQGEMIGVLRGFFAFHPQKHHYVSFLLYDGTGWVCVDDGRAYALGPHLSDALKECTEQQYQPSLLFYEAN 637
[Close]
BLAST of NO11G00850 vs. NCBI_GenBank
Match: CBN79789.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.0 bits (245), Expect = 1.500e-17
Identity = 59/163 (36.20%), Postives = 83/163 (50.92%), Query Frame = 0 
Query:    5 FGALLQGAGSGDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFSLGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQRECVGVLKGFFAFHPQKHHYVAFFFH-PGAGWVCLDDGVGKMLGPTHVEALRQCAEEHYQPTLLFYEVDQ 167
            F   L+ A  GDL  C N   C+ +RR E+    R++ G  P VFSLGLVW++    P     L+GL++PV+ L       ++    G G+        L+GFF F  QKHHYVAF ++     W+ LDD     +GP     L +C E+   P+L F+E  Q
Sbjct: 1760 FDVALREASHGDLVTCRNA-GCSLSRRKERLPSQRFITGVPPSVFSLGLVWNN--WGPGLVADLLGLLSPVVDLDVVFSRGREHGVAGAGEVSAG-KAQLRGFFCFQVQKHHYVAFVYNRDRQEWLLLDDDQAVPIGPDFAGVLGRCEEDKLHPSLFFFERKQ 1918
[Close]
BLAST of NO11G00850 vs. NCBI_GenBank
Match: XP_017112346.1 (PREDICTED: uncharacterized protein LOC108135918 isoform X1 [Drosophila elegans])

HSP 1 Score: 82.8 bits (203), Expect = 1.100e-12
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 0 
Query:    3 LDFGALLQGAGS-GDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFSLGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQRECVGVLKGFFAFHPQKHHYVAFFFHPGAG-WVCLDDGVGKMLGPTHVEALRQCAEEHYQPTLLFYEVDQ 167
            L FG LL+ AG+ GD+  C NT  C     G K    R L+ N P V S+G+VWDS +    +  A++  +   LRLG     + +Q +    Q Q E VG++  +        HY  FFFH     WV  DD   K +GP+    + +C+   YQP LL Y V Q
Sbjct:  281 LSFGQLLRAAGNMGDIRDCPNT--C-----GAKIGICRALL-NRPDVVSIGIVWDSERPAAEQVHAVLKAVGTSLRLGDVFHQVSEQRW--AQQTQHELVGIVSYY------GKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVVDKCSRGRYQPLLLLYAVPQ 430
[Close]
BLAST of NO11G00850 vs. NCBI_GenBank
Match: XP_017112347.1 (PREDICTED: uncharacterized protein LOC108135918 isoform X2 [Drosophila elegans])

HSP 1 Score: 82.8 bits (203), Expect = 1.100e-12
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 0 
Query:    3 LDFGALLQGAGS-GDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFSLGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQRECVGVLKGFFAFHPQKHHYVAFFFHPGAG-WVCLDDGVGKMLGPTHVEALRQCAEEHYQPTLLFYEVDQ 167
            L FG LL+ AG+ GD+  C NT  C     G K    R L+ N P V S+G+VWDS +    +  A++  +   LRLG     + +Q +    Q Q E VG++  +        HY  FFFH     WV  DD   K +GP+    + +C+   YQP LL Y V Q
Sbjct:  269 LSFGQLLRAAGNMGDIRDCPNT--C-----GAKIGICRALL-NRPDVVSIGIVWDSERPAAEQVHAVLKAVGTSLRLGDVFHQVSEQRW--AQQTQHELVGIVSYY------GKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVVDKCSRGRYQPLLLLYAVPQ 418
[Close]
BLAST of NO11G00850 vs. NCBI_GenBank
Match: XP_017112348.1 (PREDICTED: uncharacterized protein LOC108135918 isoform X3 [Drosophila elegans])

HSP 1 Score: 82.8 bits (203), Expect = 1.100e-12
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 0 
Query:    3 LDFGALLQGAGS-GDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFSLGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQRECVGVLKGFFAFHPQKHHYVAFFFHPGAG-WVCLDDGVGKMLGPTHVEALRQCAEEHYQPTLLFYEVDQ 167
            L FG LL+ AG+ GD+  C NT  C     G K    R L+ N P V S+G+VWDS +    +  A++  +   LRLG     + +Q +    Q Q E VG++  +        HY  FFFH     WV  DD   K +GP+    + +C+   YQP LL Y V Q
Sbjct:  245 LSFGQLLRAAGNMGDIRDCPNT--C-----GAKIGICRALL-NRPDVVSIGIVWDSERPAAEQVHAVLKAVGTSLRLGDVFHQVSEQRW--AQQTQHELVGIVSYY------GKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVVDKCSRGRYQPLLLLYAVPQ 394
[Close]
BLAST of NO11G00850 vs. NCBI_GenBank
Match: XP_017112349.1 (PREDICTED: uncharacterized protein LOC108135918 isoform X4 [Drosophila elegans])

HSP 1 Score: 82.8 bits (203), Expect = 1.100e-12
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 0 
Query:    3 LDFGALLQGAGS-GDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFSLGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQRECVGVLKGFFAFHPQKHHYVAFFFHPGAG-WVCLDDGVGKMLGPTHVEALRQCAEEHYQPTLLFYEVDQ 167
            L FG LL+ AG+ GD+  C NT  C     G K    R L+ N P V S+G+VWDS +    +  A++  +   LRLG     + +Q +    Q Q E VG++  +        HY  FFFH     WV  DD   K +GP+    + +C+   YQP LL Y V Q
Sbjct:  215 LSFGQLLRAAGNMGDIRDCPNT--C-----GAKIGICRALL-NRPDVVSIGIVWDSERPAAEQVHAVLKAVGTSLRLGDVFHQVSEQRW--AQQTQHELVGIVSYY------GKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVVDKCSRGRYQPLLLLYAVPQ 364
[Close]
BLAST of NO11G00850 vs. NCBI_GenBank
Match: XP_001966308.2 (uncharacterized protein Dana_GF22096 [Drosophila ananassae] >EDV32596.2 uncharacterized protein Dana_GF22096 [Drosophila ananassae])

HSP 1 Score: 82.4 bits (202), Expect = 1.500e-12
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 0 
Query:    3 LDFGALLQGAGS-GDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFSLGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQRECVGVLKGFFAFHPQKHHYVAFFFHPGAG-WVCLDDGVGKMLGPTHVEALRQCAEEHYQPTLLFYEVDQ 167
            L FG LL+ AG+ GD+  C NT  C     G K    R L+ N P V S+G+VWDS +    +  A++  +   LRLG     + +Q +    Q Q E VG++  +        HY  FFFH     WV  DD   K +GP+    + +C+   YQP LL Y V Q
Sbjct:  288 LSFGQLLRAAGNMGDIRDCPNT--C-----GAKIGICRALL-NRPDVVSIGIVWDSERPAADQVHAVLKAVGTSLRLGDVFHQVSEQRW--AQQTQHELVGIVSYY------GKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVVDKCSRGRYQPLLLLYAVPQ 437
[Close]
BLAST of NO11G00850 vs. NCBI_GenBank
Match: XP_017086394.1 (PREDICTED: uncharacterized protein LOC108118295 isoform X1 [Drosophila eugracilis])

HSP 1 Score: 82.4 bits (202), Expect = 1.500e-12
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 0 
Query:    3 LDFGALLQGAGS-GDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFSLGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQRECVGVLKGFFAFHPQKHHYVAFFFHPGAG-WVCLDDGVGKMLGPTHVEALRQCAEEHYQPTLLFYEVDQ 167
            L FG LL+ AG+ GD+  C NT  C     G K    R L+ N P V S+G+VWDS +    +  A++  +   LRLG     + +Q +    Q Q E VG++  +        HY  FFFH     WV  DD   K +GP+    + +C+   YQP LL Y V Q
Sbjct:  270 LSFGQLLRAAGNMGDIRDCPNT--C-----GAKIGICRALL-NRPDVVSIGIVWDSERPAADQVHAVLKAVGTSLRLGDVFHQVSEQRW--AQQTQHELVGIVSYY------GKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVVDKCSRGRYQPLLLLYAVPQ 419
[Close]
BLAST of NO11G00850 vs. NCBI_GenBank
Match: XP_017086395.1 (PREDICTED: uncharacterized protein LOC108118295 isoform X2 [Drosophila eugracilis])

HSP 1 Score: 82.4 bits (202), Expect = 1.500e-12
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 0 
Query:    3 LDFGALLQGAGS-GDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFSLGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQRECVGVLKGFFAFHPQKHHYVAFFFHPGAG-WVCLDDGVGKMLGPTHVEALRQCAEEHYQPTLLFYEVDQ 167
            L FG LL+ AG+ GD+  C NT  C     G K    R L+ N P V S+G+VWDS +    +  A++  +   LRLG     + +Q +    Q Q E VG++  +        HY  FFFH     WV  DD   K +GP+    + +C+   YQP LL Y V Q
Sbjct:  246 LSFGQLLRAAGNMGDIRDCPNT--C-----GAKIGICRALL-NRPDVVSIGIVWDSERPAADQVHAVLKAVGTSLRLGDVFHQVSEQRW--AQQTQHELVGIVSYY------GKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVVDKCSRGRYQPLLLLYAVPQ 395
The following BLAST results are available for this feature:
BLAST of NO11G00850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856289.11.100e-5563.03ubiquitin specific peptidase 54, partial [Nannochl... [more]
EWM25089.11.100e-5563.03inactive ubiquitin carboxyl-terminal hydrolase 54 ... [more]
CBN79789.11.500e-1736.20conserved unknown protein [Ectocarpus siliculosus][more]
XP_017112346.11.100e-1235.54PREDICTED: uncharacterized protein LOC108135918 is... [more]
XP_017112347.11.100e-1235.54PREDICTED: uncharacterized protein LOC108135918 is... [more]
XP_017112348.11.100e-1235.54PREDICTED: uncharacterized protein LOC108135918 is... [more]
XP_017112349.11.100e-1235.54PREDICTED: uncharacterized protein LOC108135918 is... [more]
XP_001966308.21.500e-1235.54uncharacterized protein Dana_GF22096 [Drosophila a... [more]
XP_017086394.11.500e-1235.54PREDICTED: uncharacterized protein LOC108118295 is... [more]
XP_017086395.11.500e-1235.54PREDICTED: uncharacterized protein LOC108118295 is... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002187NSK002187Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00850.1NO11G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|47858gene_4959Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g55gene5366Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00850.1NO11G00850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00850 ID=NO11G00850|Name=NO11G00850|organism=Nannochloropsis oceanica|type=gene|length=504bp
ATGGCTTTGGATTTTGGGGCCTTGCTGCAGGGAGCGGGCTCGGGGGATCT
ATACCGCTGCAGTAACACGGAACGCTGCAATTTTGCGCGGCGCGGGGAGA
AGCATGCCGGTCACCGGTATTTGGTTGGAAATACTCCTTTGGTGTTTTCG
CTGGGATTGGTTTGGGACAGTTTGAAGGGTGATCCGCATGAGACGCAGGC
GCTTATCGGGCTCATTGCGCCGGTCCTGCGCCTGGGGCATTTTAAGCTGC
CCTTGCAGCAGCAGTCGTACCAGGGCCAGGGGCAGCAGCAGAGAGAATGC
GTGGGTGTTCTCAAGGGCTTTTTTGCCTTCCACCCGCAGAAGCACCATTA
TGTAGCGTTCTTCTTCCATCCAGGCGCAGGGTGGGTGTGTCTGGATGATG
GAGTTGGGAAAATGTTGGGACCCACTCACGTTGAGGCTTTGCGGCAGTGC
GCTGAAGAGCACTACCAGCCCACTTTGCTATTTTACGAGGTGGACCAGAG
TTAG
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protein sequence of NO11G00850.1

>NO11G00850.1-protein ID=NO11G00850.1-protein|Name=NO11G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MALDFGALLQGAGSGDLYRCSNTERCNFARRGEKHAGHRYLVGNTPLVFS
LGLVWDSLKGDPHETQALIGLIAPVLRLGHFKLPLQQQSYQGQGQQQREC
VGVLKGFFAFHPQKHHYVAFFFHPGAGWVCLDDGVGKMLGPTHVEALRQC
AEEHYQPTLLFYEVDQS*
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Synonyms
Publications