NO11G00700, NO11G00700 (gene) Nannochloropsis oceanica

Overview
NameNO11G00700
Unique NameNO11G00700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3011
Alignment locationchr11:290288..293298 +

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Properties
Property NameValue
DescriptionGolgi apparatus membrane protein TVP15
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:290288..293298 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO11G00700 vs. NCBI_GenBank
Match: EWM25099.1 (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 137.5 bits (345), Expect = 3.200e-29
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 0
Query:    1 MGLACLMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIF 77
            MGLACLMAFSAVNGILKIAQ +LDT FVALYMFIFA+ILFFFELCQFKYVA+IDNVFRRNFGFMYGSRGKALYIIF
Sbjct:   44 MGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119          
BLAST of NO11G00700 vs. NCBI_GenBank
Match: OEU14668.1 (hypothetical protein FRACYDRAFT_209434 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 74.3 bits (181), Expect = 3.400e-10
Identity = 49/119 (41.18%), Postives = 67/119 (56.30%), Query Frame = 0
Query:    1 MGLACLMAFSAVNGILKIAQF---RLDTSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGL---VSTGVLQFATGIVLAVDGCLMLFATFRYP 114
            MGLA +M    V  I+++ +     L   F+A YM +FA++LF +EL  +  V  ++   R+NFGFMYG RGK LY+IF+AFL FGL       +L +ATG      G   LF  F  P
Sbjct:   62 MGLAAMMTALGVLTIIQVHRTGLGDLSEPFLAAYMVLFAALLFIYELMWWSPVPKLNKDMRKNFGFMYGLRGKGLYLIFVAFLCFGLGKEAKVAILNYATGASFLAGGLSHLFVVFFRP 180          
BLAST of NO11G00700 vs. NCBI_GenBank
Match: XP_002296289.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI65006.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 71.6 bits (174), Expect = 2.200e-9
Identity = 48/118 (40.68%), Postives = 66/118 (55.93%), Query Frame = 0
Query:    5 CLMAFSAVNGILKIAQ--FRLDTSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGL---VSTGVLQFATGIVLAVDGCLMLFATFRYPSLFA 118
            CL A     G+  I      L   FV++YM +FA++LF FEL  +K +  ++   R NFGF+YG +GKA Y+IF+AFL  GL   VS   L++ TG      G L+LF  F  P L +
Sbjct:   68 CLSALMCCLGVFGIIDNPTSLPEIFVSVYMILFATLLFLFELMWWKSIDSVNKNLRMNFGFLYGIKGKAAYLIFVAFLAIGLRDDVSVKFLRWMTGGCFLGTGILLLFLHFTKPELLS 185          
BLAST of NO11G00700 vs. NCBI_GenBank
Match: OQR90301.1 (hypothetical protein ACHHYP_05636 [Achlya hypogyna])

HSP 1 Score: 68.9 bits (167), Expect = 1.400e-8
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = 0
Query:    6 LMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGVLQFATGIVLAVDGCLMLFATFRYPSLFAGNTPAQPSASSSHPAA 134
            L  F+ ++GI  I  F L   FV+LY+ +F  +   FE C+   ++ +D   R+NFGF+Y  +G+A +I FI FL+FG  +   L +  GI++ ++  L  +   R+P   +GN  A    ++ + AA
Sbjct:   55 LQVFAGLSGIASIITFNLTAVFVSLYVIMFGVLFLLFE-CR---ISRLDPSIRKNFGFLYSYKGRASFIFFIGFLDFG--TDAGLGYIAGIIMCINAFLNFYVMMRHPEFASGNLSATSDPTAGYTAA 176          
BLAST of NO11G00700 vs. NCBI_GenBank
Match: XP_002180769.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47421.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 66.6 bits (161), Expect = 7.000e-8
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 0
Query:   26 SFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGL---VSTGV--LQFATGIVLAVDGCLMLFATFRYPSLFAGNTPAQPSASSSHPA 133
            +F++ YM IFA ILF +EL  +  +A ++ +FR NFGFMYG RGK L+++FIAFL  GL    ++GV  L +ATG+     GC  +F    +    A   P  P+A  + P+
Sbjct:   86 AFLSSYMVIFAVILFLYELIWWTPIAALNKMFRMNFGFMYGLRGKGLFLVFIAFLCLGLRDENASGVKGLDWATGLAWLGAGCFNIFIWMTWSEASAAYKP--PTAGLTGPS 195          
BLAST of NO11G00700 vs. NCBI_GenBank
Match: CBJ25882.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-7
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 0
Query:    1 MGLACLMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGVLQFATGIVLAVDGCLMLFATFRYPSL 116
            + L  +M  +A   +  ++ F   T F+ALY  +FA +L   E         +D   RR FG +YG  G+AL+IIFIAFLNF L   G     TG++L + G  M+    +YP L
Sbjct:   59 LALGLMMIIAAFTELWNLSSF--TTFFIALYNLLFAGVLILHESQGLIMCDGVDYTMRRYFGLVYGHMGRALFIIFIAFLNFALTDAGWFATFTGLLLLLHGGAMIVVFTKYPHL 171          
BLAST of NO11G00700 vs. NCBI_GenBank
Match: OQS05568.1 (hypothetical protein THRCLA_02325 [Thraustotheca clavata])

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-7
Identity = 44/128 (34.38%), Postives = 68/128 (53.12%), Query Frame = 0
Query:    6 LMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGVLQFATGIVLAVDGCLMLFATFRYPSLFAGNTPAQPSASSSHPAA 134
            L  F+ + GI  I  F     FV+LY+ +F  +   FE C+   +  +D   R+NFGF+Y  +G+A +I FI F++FG  S   L +  GI++ ++  L  +A  R+P    GN      +SSS P A
Sbjct:   51 LQIFAGITGIASIITFNFTAFFVSLYIVMFGVLFLMFE-CR---IQRLDPSIRKNFGFLYSYKGRASFIFFIGFMDFGTDSG--LGYIAGIIMCINAILNFYAMMRHPEFRYGNL-----SSSSDPTA 167          
BLAST of NO11G00700 vs. NCBI_GenBank
Match: XP_008609858.1 (hypothetical protein SDRG_05894 [Saprolegnia diclina VS20] >EQC36437.1 hypothetical protein SDRG_05894 [Saprolegnia diclina VS20])

HSP 1 Score: 63.9 bits (154), Expect = 4.600e-7
Identity = 40/130 (30.77%), Postives = 68/130 (52.31%), Query Frame = 0
Query:    4 ACLMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGVLQFATGIVLAVDGCLMLFATFRYPSLFAGNTPAQPSASSSHPAA 134
            A L  F+ + GI  I  F L   FV++Y+ +F  +   FE C+   ++  D   R NFGF+Y  +G+A +I FI F++FG  +   L +  G+++ ++  L  +A  R+P    GN  +    +  + AA
Sbjct:   54 AILQIFAGIGGIASIITFNLTAVFVSVYIIMFGVLFLLFE-CR---LSRFDKSLRTNFGFLYSYKGRAFFIFFIGFMDFG--TDDGLGYIAGVIMCINAFLNFYAMMRHPEFKNGNLSSSSDPTVGYAAA 177          
BLAST of NO11G00700 vs. NCBI_GenBank
Match: XP_012209835.1 (hypothetical protein SPRG_15357 [Saprolegnia parasitica CBS 223.65] >KDO19452.1 hypothetical protein SPRG_15357 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 63.5 bits (153), Expect = 5.900e-7
Identity = 40/130 (30.77%), Postives = 68/130 (52.31%), Query Frame = 0
Query:    4 ACLMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGVLQFATGIVLAVDGCLMLFATFRYPSLFAGNTPAQPSASSSHPAA 134
            A L  F+ + GI  I  F L   FV++Y+ +F  +   FE C+   ++  +   R NFGF+Y  +G+A +I FI F++FG  +   L +  GI++ ++  L  +A  R+P    GN  +    +  + AA
Sbjct:   52 AILQIFAGIGGIASIITFNLTAVFVSVYIIMFGVLFLLFE-CR---LSRFEKTLRTNFGFLYSYKGRAFFIFFIGFMDFG--TDDGLGYIAGIIMCINAFLNFYAMMRHPEFKNGNLSSSSDPTVGYAAA 175          
BLAST of NO11G00700 vs. NCBI_GenBank
Match: GAX23468.1 (hypothetical protein FisN_14Hh363 [Fistulifera solaris])

HSP 1 Score: 63.5 bits (153), Expect = 5.900e-7
Identity = 45/122 (36.89%), Postives = 72/122 (59.02%), Query Frame = 0
Query:    1 MGLACLMAFSAVNGILKIAQFRLD---TSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGL---VSTGV--LQFATGIVLAVDGCLMLFATFRYPS 115
            +GLA +MA   +  ++++    L+    +F+A+YM +FA +L  +E   ++ V  I+  FR+NFGFMYG +GK  Y+IFIAFL  G+    +T V  L +ATG+     GC  +F +   P+
Sbjct:   60 LGLAAMMAALGLLSLIEMDFKELNDVTEAFLAIYMVVFAVLLAMYEFAWWQPVPSINKTFRKNFGFMYGLKGKGFYLIFIAFLCIGMWKDETTAVKGLDWATGLAWLGAGCGHVFLSCCVPN 181          
The following BLAST results are available for this feature:
BLAST of NO11G00700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Position :
0
Zoom :
x 1
50010001500200025003000SequenceEWM25099.1OEU14668.1XP_002296289.1OQR90301.1XP_002180769.1CBJ25882.1OQS05568.1XP_008609858.1XP_012209835.1GAX23468.1
Match NameE-valueIdentityDescription
EWM25099.13.200e-2993.42Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
OEU14668.13.400e-1041.18hypothetical protein FRACYDRAFT_209434 [Fragilario... [more]
XP_002296289.12.200e-940.68predicted protein [Thalassiosira pseudonana CCMP13... [more]
OQR90301.11.400e-832.81hypothetical protein ACHHYP_05636 [Achlya hypogyna... [more]
XP_002180769.17.000e-841.07predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBJ25882.12.000e-736.52expressed unknown protein [Ectocarpus siliculosus][more]
OQS05568.12.000e-734.38hypothetical protein THRCLA_02325 [Thraustotheca c... [more]
XP_008609858.14.600e-730.77hypothetical protein SDRG_05894 [Saprolegnia dicli... [more]
XP_012209835.15.900e-730.77hypothetical protein SPRG_15357 [Saprolegnia paras... [more]
GAX23468.15.900e-736.89hypothetical protein FisN_14Hh363 [Fistulifera sol... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00700.1NO11G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G00700.2NO11G00700.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590877gene_4939Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00700.1NO11G00700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G00700.2NO11G00700.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00700 ID=NO11G00700|Name=NO11G00700|organism=Nannochloropsis oceanica|type=gene|length=3011bp
GCCCAATCTAATGCGAGTCTTGCTTTCGAAATTTCTTTTAACCTGCACCA
CTTTTTCAGTGTTCCGCCCTCCATTGCATCCTCCTGGTTAAGATAATTGC
CTAAATCTTCCTCCTTCCATTTCCCCTTTTCCCCCCACTCTGAATCCCTT
CATCATCCCATATCAACCTTCCTCTCCGCTTTTCCACGCTGGCACCTGAT
GGATTGCCTTCATCCCCTTTCATTGGATAATGCCATCATGACCCGATTTA
CACCTTTTCGTCCTCTATCAACTCTTAGCAGACCTCACTCCCAGCTCATG
ACTCCCCTTTTCCTCCCTCCATAAACCTACTCACACATACACAAGCTACG
CCTTGGACGCTTTGGTGCTCTCCACCTTGGTCCCCCCCATGTACTCTGAC
AACAGTCTTGGCGTGTTAAACCAGGAAGACAGTCCTAATCCTCCGTCCAC
CGGTAACAACGTCCCCGTCATGTAGGAGGAGGCGGGCGAGGCAAGAAACA
ACACGGCTTGTGCCACTTCTTCCGGCGTGCCATTTCGACCCATCGGGATC
GCATTAGCGCGCAACGAGGCATATTCACCAAGATCGCGGCCTTTTTTCAC
GGCCATTACGTCCAATGCTTTGGTGTGGATGCATCCGGGCAGCACCCCAT
TCACGCGGAAACCGTCTTGTCGATGCTTGAACGCCAGAGTCTCAACCAAT
GCGTTCTGTGCCGCCTTGGCCAGATTAAAAGGAGCAGTGTCAGGCCATGG
ACAGTGCGCGGCAAGGGAGCTGACCATCACTACAGACCCGCCACCGTTGG
GGGCCTGGCTGAGAAAGGGGGCGGCGGCCGCGACAAGAAACATTGGGGAG
AGCACGGCCATGTCGTACATGAGATGATAGCTCGCGGCATCCGTCGGATC
CAGTCCCAAGTACTCTGAGTAGCCATTTCCCCCACTGACAATTAATACAT
CTAGCCCCCCACCAAGCTTATCGACGGCGGCTCCGACAAGCTCTGCCATC
GTCTCGGGCTTTTTCAGATTGCCTTCCAAGCCCGACAAGCCTGCGGGGAC
GGCGCTACCCATCTTGGCAAGGTCCCGGCCAACCACGACGACATGCACGG
CGCCCGCAGCCAGACAAGCCAAAGCTGAGACGTAGCCAACGGATGCGGGT
TCAGTCCCGCCGGTCACGAGGCAGCGTTTGCCCTTGAGATCCGGGGCCAT
ACTGGTTGAAGGAATAGGGAGCAAGCCCAGGCAGGCTTGTACTAGGTAAC
TGTGTTCTTGTGTTTTTTGTGGGCTTAGGGCAAGATAAGTGATTTGACAT
CAAGCATATTGGCAAAGAGGCTCTGACGCTTGACGCTTGACACAAATGGG
TAGGGCATCTTTGCTATTTATTTTCGTTGGCTACGCCAGCAATAGGGCTC
GAACATGGACTGTCTCGGTGGTCGAGCAGGAGAAGCGAGGCGGTCAAACA
CCACTATCACTCATCCAAAACAAACTAAAAAAAAATCTTGATACATATCA
CGCAATTACACATTATATCGCATCCTTCGACTGAGGACTCTCTTGCTTGG
GCGTGCCGTCCTTAAGGAACACATGGACTTTACAGCCGTTGCCCACAACT
GCTGAATCGCCAACCAGCGGCTTCTTGCCCAGCAGTCATTCTGACTGCAC
GCATGATTATAAAATATCCCCACGCCCTCATTCACACGCGCACACATTCA
CAGGGTTTGACTTGACACACGTGGCACCAGGCACGAACAGCATGGCGAAC
GCACCGTCATGGCTCGATGTACGTACAAAAGGAACACGTTATCGACGATG
TAATCGTCATCATCCTCCCTCCCTTCCTTTCCCTACACCGAAACCCACAG
CAAGACCAACAACAAGGGGTCGTCGGACCATCTCCACCTCCAGGGAGCTC
CTCACCCACACCCAGCATTCAAGAAAGAGTTGAAAACTATCTGTAAGTGA
GTCGCTTCTCCTCCTCTACAGACGGGGGGGGGAAAGAGAAAGAGGAGCGA
AAGGAGACAGAAACTGGCTTCAGAGTTTTGACGAGGAGAAAAAGGGGGCA
GTGAGCATCAAATTTCTGGAAAAGGGTCCTCGAAGAACGATGGATAGCTG
AGATATCACCGACGCCGCTCAACACCCCTTCCCTTCCCGTCGTCTCCCTC
CAACCCCAGACCGGCCTGTGCTAAATACGTCATTCCCTTGTCAAGGGTTA
TCAATATGGGCCTGGCCTGCTTGATGGCCTTTTCGGCCGTCAATGGCATT
TTAAAAATCGCCCAGTTCAGGCTCGACACATCCTTTGTGGCCTTATACAT
GTTgtgagtaggacaggaaaaggaggtggaggaaggggtgtgtgggagaa
ggaaggacgtctagtctgcataacctgatctgcttctcgacctcttcgtg
tccttgcataggccctgatgattcttttgtttcttttcttctcacacagC
ATATTTGCCTCTATCCTCTTCTTCTTCGAGCTGTGCCAGTTCAAATACGT
CGCCTGGATCGACAACGTCTTCCGGAGGAACTTTGGCTTCATGTATGGGT
CCAGAGGCAAGGCTCTGTACATCATCTTgtgagtaaagatcgaggatggc
gtgattgagcgggtagaaaaattaaaagtaatggaggtcccggtcactaa
cctcacctgttctttccctttctttcttccttccttcccctcgtcctaca
acagCATTGCCTTTCTCAACTTCGGCCTAGTCAGCACGGGTGTCCTCCAA
TTTGCGACTGGCATCGTGCTGGCTGTCGATGGGTGCCTTATGCTTTTTGC
TACCTTTAGATACCCGTCGCTCTTTGCAGGAAATACACCAGCACAGCCGT
CGGCAAGCTCGTCGCACCCAGCGGCGGCAGCCTCGAAGGGACCAGGGCAG
GTGTAGAGAGGCCGGGAAGTGGGAGAGAGGAAAGGGAGGAAGGGAGGGCA
TTGTTGTTGGAATGTAAATTTAAAGAACAGAAAAATTAAGAAAGAAGGGC
ATGAGGCATTG
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protein sequence of NO11G00700.1

>NO11G00700.1-protein ID=NO11G00700.1-protein|Name=NO11G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MGLACLMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELCQFKYV
AWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGVLQFATGIVLAV
DGCLMLFATFRYPSLFAGNTPAQPSASSSHPAAAASKGPGQV*
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protein sequence of NO11G00700.2

>NO11G00700.2-protein ID=NO11G00700.2-protein|Name=NO11G00700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MANAPSWLDQDQQQGVVGPSPPPGSSSPTPSIQERVENYLPACAKYVIPL
SRVINMGLACLMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELC
QFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGVLQFATG
IVLAVDGCLMLFATFRYPSLFAGNTPAQPSASSSHPAAAASKGPGQV*
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Synonyms
Publications