NO11G00700.2, NO11G00700.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00700.2
Unique NameNO11G00700.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length747
Alignment locationchr11:291981..293298 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:291981..293298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00700.2 vs.
Match: EWM25099.1 (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 164.9 bits (416), Expect = 2.600e-37
Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 0 
Query:   29 TPSIQERVENYLPACAKYVIPLSRVINMGLACLMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIF 132
            TPS    + +  P+CAKYV+PLSR +NMGLACLMAFSAVNGILKIAQ +LDT FVALYMFIFA+ILFFFELCQFKYVA+IDNVFRRNFGFMYGSRGKALYIIF
Sbjct:   17 TPSPLLMILHDRPSCAKYVVPLSRFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
The following BLAST results are available for this feature:
BLAST of NO11G00700.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25099.12.600e-3782.52Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00700NO11G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00700.2NO11G00700.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00700.2.cds1NO11G00700.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00700.2.cds2NO11G00700.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00700.2.cds3NO11G00700.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00700.2.cds4NO11G00700.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00700.2.cds5NO11G00700.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00700.2 ID=NO11G00700.2|Name=NO11G00700.2|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
ACATTCACAGGGTTTGACTTGACACACGTGGCACCAGGCACGAACAGCAT
GGCGAACGCACCGTCATGGCTCGATCAAGACCAACAACAAGGGGTCGTCG
GACCATCTCCACCTCCAGGGAGCTCCTCACCCACACCCAGCATTCAAGAA
AGAGTTGAAAACTATCTACCGGCCTGTGCTAAATACGTCATTCCCTTGTC
AAGGGTTATCAATATGGGCCTGGCCTGCTTGATGGCCTTTTCGGCCGTCA
ATGGCATTTTAAAAATCGCCCAGTTCAGGCTCGACACATCCTTTGTGGCC
TTATACATGTTCATATTTGCCTCTATCCTCTTCTTCTTCGAGCTGTGCCA
GTTCAAATACGTCGCCTGGATCGACAACGTCTTCCGGAGGAACTTTGGCT
TCATGTATGGGTCCAGAGGCAAGGCTCTGTACATCATCTTCATTGCCTTT
CTCAACTTCGGCCTAGTCAGCACGGGTGTCCTCCAATTTGCGACTGGCAT
CGTGCTGGCTGTCGATGGGTGCCTTATGCTTTTTGCTACCTTTAGATACC
CGTCGCTCTTTGCAGGAAATACACCAGCACAGCCGTCGGCAAGCTCGTCG
CACCCAGCGGCGGCAGCCTCGAAGGGACCAGGGCAGGTGTAGAGAGGCCG
GGAAGTGGGAGAGAGGAAAGGGAGGAAGGGAGGGCATTGTTGTTGGAATG
TAAATTTAAAGAACAGAAAAATTAAGAAAGAAGGGCATGAGGCATTG
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protein sequence of NO11G00700.2

>NO11G00700.2-protein ID=NO11G00700.2-protein|Name=NO11G00700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MANAPSWLDQDQQQGVVGPSPPPGSSSPTPSIQERVENYLPACAKYVIPL
SRVINMGLACLMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELC
QFKYVAWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGVLQFATG
IVLAVDGCLMLFATFRYPSLFAGNTPAQPSASSSHPAAAASKGPGQV*
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mRNA from alignment at chr11:291981..293298+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00700.2 ID=NO11G00700.2|Name=NO11G00700.2|organism=Nannochloropsis oceanica|type=mRNA|length=1318bp|location=Sequence derived from alignment at chr11:291981..293298+ (Nannochloropsis oceanica)
ACATTCACAGGGTTTGACTTGACACACGTGGCACCAGGCACGAACAGCAT
GGCGAACGCACCGTCATGGCTCGATGTACGTACAAAAGGAACACGTTATC
GACGATGTAATCGTCATCATCCTCCCTCCCTTCCTTTCCCTACACCGAAA
CCCACAGCAAGACCAACAACAAGGGGTCGTCGGACCATCTCCACCTCCAG
GGAGCTCCTCACCCACACCCAGCATTCAAGAAAGAGTTGAAAACTATCTG
TAAGTGAGTCGCTTCTCCTCCTCTACAGACGGGGGGGGGAAAGAGAAAGA
GGAGCGAAAGGAGACAGAAACTGGCTTCAGAGTTTTGACGAGGAGAAAAA
GGGGGCAGTGAGCATCAAATTTCTGGAAAAGGGTCCTCGAAGAACGATGG
ATAGCTGAGATATCACCGACGCCGCTCAACACCCCTTCCCTTCCCGTCGT
CTCCCTCCAACCCCAGACCGGCCTGTGCTAAATACGTCATTCCCTTGTCA
AGGGTTATCAATATGGGCCTGGCCTGCTTGATGGCCTTTTCGGCCGTCAA
TGGCATTTTAAAAATCGCCCAGTTCAGGCTCGACACATCCTTTGTGGCCT
TATACATGTTGTGAGTAGGACAGGAAAAGGAGGTGGAGGAAGGGGTGTGT
GGGAGAAGGAAGGACGTCTAGTCTGCATAACCTGATCTGCTTCTCGACCT
CTTCGTGTCCTTGCATAGGCCCTGATGATTCTTTTGTTTCTTTTCTTCTC
ACACAGCATATTTGCCTCTATCCTCTTCTTCTTCGAGCTGTGCCAGTTCA
AATACGTCGCCTGGATCGACAACGTCTTCCGGAGGAACTTTGGCTTCATG
TATGGGTCCAGAGGCAAGGCTCTGTACATCATCTTGTGAGTAAAGATCGA
GGATGGCGTGATTGAGCGGGTAGAAAAATTAAAAGTAATGGAGGTCCCGG
TCACTAACCTCACCTGTTCTTTCCCTTTCTTTCTTCCTTCCTTCCCCTCG
TCCTACAACAGCATTGCCTTTCTCAACTTCGGCCTAGTCAGCACGGGTGT
CCTCCAATTTGCGACTGGCATCGTGCTGGCTGTCGATGGGTGCCTTATGC
TTTTTGCTACCTTTAGATACCCGTCGCTCTTTGCAGGAAATACACCAGCA
CAGCCGTCGGCAAGCTCGTCGCACCCAGCGGCGGCAGCCTCGAAGGGACC
AGGGCAGGTGTAGAGAGGCCGGGAAGTGGGAGAGAGGAAAGGGAGGAAGG
GAGGGCATTGTTGTTGGAATGTAAATTTAAAGAACAGAAAAATTAAGAAA
GAAGGGCATGAGGCATTG
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Coding sequence (CDS) from alignment at chr11:291981..293298+

>NO11G00700.2 ID=NO11G00700.2|Name=NO11G00700.2|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr11:291981..293298+ (Nannochloropsis oceanica)
ATGGCGAACGCACCGTCATGGCTCGATCAAGACCAACAACAAGGGGTCGT
CGGACCATCTCCACCTCCAGGGAGCTCCTCACCCACACCCAGCATTCAAG
AAAGAGTTGAAAACTATCTACCGGCCTGTGCTAAATACGTCATTCCCTTG
TCAAGGGTTATCAATATGGGCCTGGCCTGCTTGATGGCCTTTTCGGCCGT
CAATGGCATTTTAAAAATCGCCCAGTTCAGGCTCGACACATCCTTTGTGG
CCTTATACATGTTCATATTTGCCTCTATCCTCTTCTTCTTCGAGCTGTGC
CAGTTCAAATACGTCGCCTGGATCGACAACGTCTTCCGGAGGAACTTTGG
CTTCATGTATGGGTCCAGAGGCAAGGCTCTGTACATCATCTTCATTGCCT
TTCTCAACTTCGGCCTAGTCAGCACGGGTGTCCTCCAATTTGCGACTGGC
ATCGTGCTGGCTGTCGATGGGTGCCTTATGCTTTTTGCTACCTTTAGATA
CCCGTCGCTCTTTGCAGGAAATACACCAGCACAGCCGTCGGCAAGCTCGT
CGCACCCAGCGGCGGCAGCCTCGAAGGGACCAGGGCAGGTGTAG
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Synonyms
Publications