NO11G00630, NO11G00630 (gene) Nannochloropsis oceanica

Overview
NameNO11G00630
Unique NameNO11G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2671
Alignment locationchr11:266741..269411 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:266741..269411 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G00630 vs. NCBI_GenBank
Match: EWM25088.1 (hypothetical protein Naga_100016g78 [Nannochloropsis gaditana])

HSP 1 Score: 522.7 bits (1345), Expect = 9.700e-145
Identity = 238/328 (72.56%), Postives = 276/328 (84.15%), Query Frame = 0 
Query:   28 MRTWSSLTLLVATAAPTLHSTRAACDVPSQDVGCMFTQDIIAPEGSYNSLTHQVAYCKMQGYDTVSRQTSQGPSVFTSGLVKIGVGLAHNQFGSRTHPSWMDLPEGAAACGMCLEVTKVSNMPELSDDLTSWNYGKNVSVPFLAMVFDQCTDPICDQTGFLDFDIYNELQPVTKGNPRVMEWRAVDCPVGDEHKLEYLMCTPGTCNAEDPPDVPRWGALFNPDFFAVFVRNQRLPIVKVEMEDPSTGA----YRDMPFISGLGWAWSGKTYEVAKAKDVKIRVTAADGQVVTETFSKQQFFESPGERAYRGGLLLQGTQQFNPSHFKA 352
            MR+WSS    VA  A  L S  AAC+ PSQD+ CMF + I A  GSYNSLTHQVAYCKMQGYDTVSR +S+GPSVFTSGLVKIGVGLAHNQFGS   PSW++LPEGAA CGMCLEVTKVSNMP ++DDL +W+Y +N++VPFLAMVFDQCTD ICDQ+G+LDFD+Y+E QPV KGNPR+MEWRAVDCPVG+ HKLEYL+CTPGTCNA+DP  VP +GA+FNPDFFAVFVRN RLP++KVEMEDP T A    +RDMPF SGLGW WSGKT+++ +AKD+KIRVTAADGQ+VTE F+K QF +SPG  AYRGGLLL G +QF+PS F A
Sbjct:    1 MRSWSSFCFAVAAGALILRSASAACEKPSQDIACMFQEPIEAAAGSYNSLTHQVAYCKMQGYDTVSRASSEGPSVFTSGLVKIGVGLAHNQFGSAADPSWLNLPEGAATCGMCLEVTKVSNMPAIADDLITWDYDRNMTVPFLAMVFDQCTDEICDQSGYLDFDVYSETQPVKKGNPRLMEWRAVDCPVGETHKLEYLVCTPGTCNADDPRSVPNFGAIFNPDFFAVFVRNHRLPVIKVEMEDPDTIAGVPSFRDMPFTSGLGWTWSGKTFQMDEAKDIKIRVTAADGQIVTERFTKSQFLDSPGAPAYRGGLLLHGQKQFSPSKFSA 328
The following BLAST results are available for this feature:
BLAST of NO11G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25088.19.700e-14572.56hypothetical protein Naga_100016g78 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002208NSK002208Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00630.1NO11G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|46801gene_4928Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g78gene5344Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00630.1NO11G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00630 ID=NO11G00630|Name=NO11G00630|organism=Nannochloropsis oceanica|type=gene|length=2671bp
ATGGACCTTATCTCGgtgcgaaagacgaaaatatctatggcgacttctta
gttgtagtccaatttcccccccttcccttccctggggcgacctctattcc
aatgcgattctcacactacgaggacacataccaacccacagAGCACCCCT
CCCACCTCTTCTGTCGATCCAAGCTCTACAGCCACCGGAGACAGCGCGAG
CGAAATCATGCGCACCTGGTCATCCCTCACCCTCCTGGTCGCCACCGCTG
CACCCACCCTTCAgtacgttaccctatccgcaccccccccgtatgcttca
agccactcaaatcgcttccacacgattttatttcgccacgcgtggtcaca
cacacgcacagCTCCACTCGCGCTGCTTGCGATGTGCCATCCCAGGACGT
CGGCTGCATGTTTACGCAAGACATTATTGCCCCAGAGGGATCGTATAATT
CTCTGACCCATCAAGTGGCCTACTGCAAAATGCAGGgtgggtgttcgcag
aggaagggaaggagggagggaggaaaggagagagggcaggagaaagggaa
agcttcagtgacggacaaagagtgagtgaaggaggctcagatgcaagaaa
ttgtgatatgtaggaccagaagagaatttccagcgtccgagatgacgcgg
aagcacaccaaccaccaaccaaagcctcatttacccctccttccctccct
tcttccctttctccctcccgtagGCTACGACACTGTTTCCCGTCAGACAT
CGCAGGGACCCTCCGTTTTCACCTCTGGCCTAGTCAAGATTGGGGTGGGA
CTGGCCCATAATCAATTCGGCTCGCGCACGCACCCGTCCTGGATGGATCT
GCCGGAGGGAGCGGCGGCGTGCGGAATGTGTTTGGAGgtgagggagagag
ggagggagagagaaagaaaggaagcggaggtagagagtcctggatacctg
cagaaaaggatattgatgttaacgtagcagtatgcgtaaacacagcatca
aagataaagactccttccccctccttcccttcccttcccttcccttccct
tccctcccttcctcccgccctccctccctccatccctccctcccagGTGA
CCAAGGTCTCGAACATGCCCGAACTATCCGATGATCTCACATCGTGGAAC
TACGGCAAGAACGTCAGCGTTCCCTTCCTTGCCATGGTGTTTGATCAATG
CACAGACCCCATCTGCGACCAAACAGgtgaagccccctccttccctccct
cctcctccctccctcctcctcccctgctcccttcctccctttctaatcaa
taaaaaactcttgtttactatcggctccgcactcgtgatcttccctccct
ccccccctccctagGCTTCCTTGACTTCGACATCTACAACGAGCTGCAGC
CCGTGACGAAGGGCAATCCCCGTGTGATGGAATGGCGAGCCGTCGACTGC
CCGGTAGGCGATGAGCATAAGTTGGAGTATTTAATGTGCACGCCTGGCAC
ATGTAACGCGGAGGATCCCCCTGATgtaaggagggagggagggagggagg
ggtctcgagtttccggtgggagaaaggcgtgagacctgagggagggaggg
agggagggagggagggaggggtcaggcggagatggatctccaaccaatgt
acatatggcttctttcttccctccaaccctcccttcctcattattggtgt
gaactcatgttcacgctcctccctccctcccttcctccctcactctctcc
cttcctctctcccttccttccttcctcagGTCCCTCGGTGGGGCGCTCTG
TTCAACCCTGACTTCTTCGCTGTCTTTGTCCGCAACCAGCGCCTGCCCAT
CGTCAAGGTGGAGATGGAGGACCCCAGCACGgtgatgagggaggaaagga
gagagggagagaggacagccacattttgactgacaacaatatgctgaccg
tgaagctctccctccattcctccttccctcccttcctcgctccctcccta
gGGCGCCTACCGAGACATGCCCTTCATCAGCGGCTTGGGATGGGCCTGGT
CGGGGAAAACGTACGAGGTTGCCAAAGCCAAAGACGTGAAGATCCGCGTC
ACTGCGGCTGATGGACAGgtgcctaccttcccccctccctcccccctccc
tctccatcagattcagtttcggtgctgtcaatggagagcaatccccttcc
tccttcctctcccctccttcatttcctccctgtcattgtgctcacgcagg
gtctcggcatcactctccgctttgacctctcatccatgtttgccctccct
ccctccctccctcctttctttcctccctccctccgtccccagGTCGTCAC
CGAGACGTTCAGCAAGCAGCAATTCTTTGAGTCGCCCGGCGAGCGCGCCT
ATCGgtaaaaaaagagggcccggacggagggaggggtcagcatatctcat
ccatttcctcgttactgataccctccctctctcgtccttccccctccttc
ttccctcatagGGGTGGCCTCCTCTTGCAGGGGACGCAGCAGTTCAACCC
ATCGCATTTCAAAGCGCATCACACGGGAGGGAGGAAGGCCGGGCACAGAC
GACAGTTGTTGCGAGGCGCGGAGCTGGAGGAGTCGGGAAGGGGGGAGGAG
GAAGTAGACTTGCTTGAATAA
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protein sequence of NO11G00630.1

>NO11G00630.1-protein ID=NO11G00630.1-protein|Name=NO11G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MDLISSTPPTSSVDPSSTATGDSASEIMRTWSSLTLLVATAAPTLHSTRA
ACDVPSQDVGCMFTQDIIAPEGSYNSLTHQVAYCKMQGYDTVSRQTSQGP
SVFTSGLVKIGVGLAHNQFGSRTHPSWMDLPEGAAACGMCLEVTKVSNMP
ELSDDLTSWNYGKNVSVPFLAMVFDQCTDPICDQTGFLDFDIYNELQPVT
KGNPRVMEWRAVDCPVGDEHKLEYLMCTPGTCNAEDPPDVPRWGALFNPD
FFAVFVRNQRLPIVKVEMEDPSTGAYRDMPFISGLGWAWSGKTYEVAKAK
DVKIRVTAADGQVVTETFSKQQFFESPGERAYRGGLLLQGTQQFNPSHFK
AHHTGGRKAGHRRQLLRGAELEESGRGEEEVDLLE*
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Synonyms
Publications