NO11G00630.1, NO11G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00630.1
Unique NameNO11G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr11:266741..269411 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:266741..269411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00630.1 vs.
Match: EWM25088.1 (hypothetical protein Naga_100016g78 [Nannochloropsis gaditana])

HSP 1 Score: 522.7 bits (1345), Expect = 9.700e-145
Identity = 238/328 (72.56%), Postives = 276/328 (84.15%), Query Frame = 0 
Query:   28 MRTWSSLTLLVATAAPTLHSTRAACDVPSQDVGCMFTQDIIAPEGSYNSLTHQVAYCKMQGYDTVSRQTSQGPSVFTSGLVKIGVGLAHNQFGSRTHPSWMDLPEGAAACGMCLEVTKVSNMPELSDDLTSWNYGKNVSVPFLAMVFDQCTDPICDQTGFLDFDIYNELQPVTKGNPRVMEWRAVDCPVGDEHKLEYLMCTPGTCNAEDPPDVPRWGALFNPDFFAVFVRNQRLPIVKVEMEDPSTGA----YRDMPFISGLGWAWSGKTYEVAKAKDVKIRVTAADGQVVTETFSKQQFFESPGERAYRGGLLLQGTQQFNPSHFKA 352
            MR+WSS    VA  A  L S  AAC+ PSQD+ CMF + I A  GSYNSLTHQVAYCKMQGYDTVSR +S+GPSVFTSGLVKIGVGLAHNQFGS   PSW++LPEGAA CGMCLEVTKVSNMP ++DDL +W+Y +N++VPFLAMVFDQCTD ICDQ+G+LDFD+Y+E QPV KGNPR+MEWRAVDCPVG+ HKLEYL+CTPGTCNA+DP  VP +GA+FNPDFFAVFVRN RLP++KVEMEDP T A    +RDMPF SGLGW WSGKT+++ +AKD+KIRVTAADGQ+VTE F+K QF +SPG  AYRGGLLL G +QF+PS F A
Sbjct:    1 MRSWSSFCFAVAAGALILRSASAACEKPSQDIACMFQEPIEAAAGSYNSLTHQVAYCKMQGYDTVSRASSEGPSVFTSGLVKIGVGLAHNQFGSAADPSWLNLPEGAATCGMCLEVTKVSNMPAIADDLITWDYDRNMTVPFLAMVFDQCTDEICDQSGYLDFDVYSETQPVKKGNPRLMEWRAVDCPVGETHKLEYLVCTPGTCNADDPRSVPNFGAIFNPDFFAVFVRNHRLPVIKVEMEDPDTIAGVPSFRDMPFTSGLGWTWSGKTFQMDEAKDIKIRVTAADGQIVTERFTKSQFLDSPGAPAYRGGLLLHGQKQFSPSKFSA 328
The following BLAST results are available for this feature:
BLAST of NO11G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25088.19.700e-14572.56hypothetical protein Naga_100016g78 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00630NO11G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00630.1NO11G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00630.1.cds1NO11G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00630.1.cds2NO11G00630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00630.1.cds3NO11G00630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00630.1.cds4NO11G00630.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00630.1.cds5NO11G00630.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00630.1.cds6NO11G00630.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00630.1.cds7NO11G00630.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00630.1.cds8NO11G00630.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00630.1.cds9NO11G00630.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00630.1.cds10NO11G00630.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00630.1 ID=NO11G00630.1|Name=NO11G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATGGACCTTATCTCGAGCACCCCTCCCACCTCTTCTGTCGATCCAAGCTC
TACAGCCACCGGAGACAGCGCGAGCGAAATCATGCGCACCTGGTCATCCC
TCACCCTCCTGGTCGCCACCGCTGCACCCACCCTTCACTCCACTCGCGCT
GCTTGCGATGTGCCATCCCAGGACGTCGGCTGCATGTTTACGCAAGACAT
TATTGCCCCAGAGGGATCGTATAATTCTCTGACCCATCAAGTGGCCTACT
GCAAAATGCAGGGCTACGACACTGTTTCCCGTCAGACATCGCAGGGACCC
TCCGTTTTCACCTCTGGCCTAGTCAAGATTGGGGTGGGACTGGCCCATAA
TCAATTCGGCTCGCGCACGCACCCGTCCTGGATGGATCTGCCGGAGGGAG
CGGCGGCGTGCGGAATGTGTTTGGAGGTGACCAAGGTCTCGAACATGCCC
GAACTATCCGATGATCTCACATCGTGGAACTACGGCAAGAACGTCAGCGT
TCCCTTCCTTGCCATGGTGTTTGATCAATGCACAGACCCCATCTGCGACC
AAACAGGCTTCCTTGACTTCGACATCTACAACGAGCTGCAGCCCGTGACG
AAGGGCAATCCCCGTGTGATGGAATGGCGAGCCGTCGACTGCCCGGTAGG
CGATGAGCATAAGTTGGAGTATTTAATGTGCACGCCTGGCACATGTAACG
CGGAGGATCCCCCTGATGTCCCTCGGTGGGGCGCTCTGTTCAACCCTGAC
TTCTTCGCTGTCTTTGTCCGCAACCAGCGCCTGCCCATCGTCAAGGTGGA
GATGGAGGACCCCAGCACGGGCGCCTACCGAGACATGCCCTTCATCAGCG
GCTTGGGATGGGCCTGGTCGGGGAAAACGTACGAGGTTGCCAAAGCCAAA
GACGTGAAGATCCGCGTCACTGCGGCTGATGGACAGGTCGTCACCGAGAC
GTTCAGCAAGCAGCAATTCTTTGAGTCGCCCGGCGAGCGCGCCTATCGGG
GTGGCCTCCTCTTGCAGGGGACGCAGCAGTTCAACCCATCGCATTTCAAA
GCGCATCACACGGGAGGGAGGAAGGCCGGGCACAGACGACAGTTGTTGCG
AGGCGCGGAGCTGGAGGAGTCGGGAAGGGGGGAGGAGGAAGTAGACTTGC
TTGAATAA
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protein sequence of NO11G00630.1

>NO11G00630.1-protein ID=NO11G00630.1-protein|Name=NO11G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MDLISSTPPTSSVDPSSTATGDSASEIMRTWSSLTLLVATAAPTLHSTRA
ACDVPSQDVGCMFTQDIIAPEGSYNSLTHQVAYCKMQGYDTVSRQTSQGP
SVFTSGLVKIGVGLAHNQFGSRTHPSWMDLPEGAAACGMCLEVTKVSNMP
ELSDDLTSWNYGKNVSVPFLAMVFDQCTDPICDQTGFLDFDIYNELQPVT
KGNPRVMEWRAVDCPVGDEHKLEYLMCTPGTCNAEDPPDVPRWGALFNPD
FFAVFVRNQRLPIVKVEMEDPSTGAYRDMPFISGLGWAWSGKTYEVAKAK
DVKIRVTAADGQVVTETFSKQQFFESPGERAYRGGLLLQGTQQFNPSHFK
AHHTGGRKAGHRRQLLRGAELEESGRGEEEVDLLE*
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mRNA from alignment at chr11:266741..269411+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00630.1 ID=NO11G00630.1|Name=NO11G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2671bp|location=Sequence derived from alignment at chr11:266741..269411+ (Nannochloropsis oceanica)
ATGGACCTTATCTCGGTGCGAAAGACGAAAATATCTATGGCGACTTCTTA
GTTGTAGTCCAATTTCCCCCCCTTCCCTTCCCTGGGGCGACCTCTATTCC
AATGCGATTCTCACACTACGAGGACACATACCAACCCACAGAGCACCCCT
CCCACCTCTTCTGTCGATCCAAGCTCTACAGCCACCGGAGACAGCGCGAG
CGAAATCATGCGCACCTGGTCATCCCTCACCCTCCTGGTCGCCACCGCTG
CACCCACCCTTCAGTACGTTACCCTATCCGCACCCCCCCCGTATGCTTCA
AGCCACTCAAATCGCTTCCACACGATTTTATTTCGCCACGCGTGGTCACA
CACACGCACAGCTCCACTCGCGCTGCTTGCGATGTGCCATCCCAGGACGT
CGGCTGCATGTTTACGCAAGACATTATTGCCCCAGAGGGATCGTATAATT
CTCTGACCCATCAAGTGGCCTACTGCAAAATGCAGGGTGGGTGTTCGCAG
AGGAAGGGAAGGAGGGAGGGAGGAAAGGAGAGAGGGCAGGAGAAAGGGAA
AGCTTCAGTGACGGACAAAGAGTGAGTGAAGGAGGCTCAGATGCAAGAAA
TTGTGATATGTAGGACCAGAAGAGAATTTCCAGCGTCCGAGATGACGCGG
AAGCACACCAACCACCAACCAAAGCCTCATTTACCCCTCCTTCCCTCCCT
TCTTCCCTTTCTCCCTCCCGTAGGCTACGACACTGTTTCCCGTCAGACAT
CGCAGGGACCCTCCGTTTTCACCTCTGGCCTAGTCAAGATTGGGGTGGGA
CTGGCCCATAATCAATTCGGCTCGCGCACGCACCCGTCCTGGATGGATCT
GCCGGAGGGAGCGGCGGCGTGCGGAATGTGTTTGGAGGTGAGGGAGAGAG
GGAGGGAGAGAGAAAGAAAGGAAGCGGAGGTAGAGAGTCCTGGATACCTG
CAGAAAAGGATATTGATGTTAACGTAGCAGTATGCGTAAACACAGCATCA
AAGATAAAGACTCCTTCCCCCTCCTTCCCTTCCCTTCCCTTCCCTTCCCT
TCCCTCCCTTCCTCCCGCCCTCCCTCCCTCCATCCCTCCCTCCCAGGTGA
CCAAGGTCTCGAACATGCCCGAACTATCCGATGATCTCACATCGTGGAAC
TACGGCAAGAACGTCAGCGTTCCCTTCCTTGCCATGGTGTTTGATCAATG
CACAGACCCCATCTGCGACCAAACAGGTGAAGCCCCCTCCTTCCCTCCCT
CCTCCTCCCTCCCTCCTCCTCCCCTGCTCCCTTCCTCCCTTTCTAATCAA
TAAAAAACTCTTGTTTACTATCGGCTCCGCACTCGTGATCTTCCCTCCCT
CCCCCCCTCCCTAGGCTTCCTTGACTTCGACATCTACAACGAGCTGCAGC
CCGTGACGAAGGGCAATCCCCGTGTGATGGAATGGCGAGCCGTCGACTGC
CCGGTAGGCGATGAGCATAAGTTGGAGTATTTAATGTGCACGCCTGGCAC
ATGTAACGCGGAGGATCCCCCTGATGTAAGGAGGGAGGGAGGGAGGGAGG
GGTCTCGAGTTTCCGGTGGGAGAAAGGCGTGAGACCTGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGGTCAGGCGGAGATGGATCTCCAACCAATGT
ACATATGGCTTCTTTCTTCCCTCCAACCCTCCCTTCCTCATTATTGGTGT
GAACTCATGTTCACGCTCCTCCCTCCCTCCCTTCCTCCCTCACTCTCTCC
CTTCCTCTCTCCCTTCCTTCCTTCCTCAGGTCCCTCGGTGGGGCGCTCTG
TTCAACCCTGACTTCTTCGCTGTCTTTGTCCGCAACCAGCGCCTGCCCAT
CGTCAAGGTGGAGATGGAGGACCCCAGCACGGTGATGAGGGAGGAAAGGA
GAGAGGGAGAGAGGACAGCCACATTTTGACTGACAACAATATGCTGACCG
TGAAGCTCTCCCTCCATTCCTCCTTCCCTCCCTTCCTCGCTCCCTCCCTA
GGGCGCCTACCGAGACATGCCCTTCATCAGCGGCTTGGGATGGGCCTGGT
CGGGGAAAACGTACGAGGTTGCCAAAGCCAAAGACGTGAAGATCCGCGTC
ACTGCGGCTGATGGACAGGTGCCTACCTTCCCCCCTCCCTCCCCCCTCCC
TCTCCATCAGATTCAGTTTCGGTGCTGTCAATGGAGAGCAATCCCCTTCC
TCCTTCCTCTCCCCTCCTTCATTTCCTCCCTGTCATTGTGCTCACGCAGG
GTCTCGGCATCACTCTCCGCTTTGACCTCTCATCCATGTTTGCCCTCCCT
CCCTCCCTCCCTCCTTTCTTTCCTCCCTCCCTCCGTCCCCAGGTCGTCAC
CGAGACGTTCAGCAAGCAGCAATTCTTTGAGTCGCCCGGCGAGCGCGCCT
ATCGGTAAAAAAAGAGGGCCCGGACGGAGGGAGGGGTCAGCATATCTCAT
CCATTTCCTCGTTACTGATACCCTCCCTCTCTCGTCCTTCCCCCTCCTTC
TTCCCTCATAGGGGTGGCCTCCTCTTGCAGGGGACGCAGCAGTTCAACCC
ATCGCATTTCAAAGCGCATCACACGGGAGGGAGGAAGGCCGGGCACAGAC
GACAGTTGTTGCGAGGCGCGGAGCTGGAGGAGTCGGGAAGGGGGGAGGAG
GAAGTAGACTTGCTTGAATAA
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Coding sequence (CDS) from alignment at chr11:266741..269411+

>NO11G00630.1 ID=NO11G00630.1|Name=NO11G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr11:266741..269411+ (Nannochloropsis oceanica)
ATGGACCTTATCTCGAGCACCCCTCCCACCTCTTCTGTCGATCCAAGCTC
TACAGCCACCGGAGACAGCGCGAGCGAAATCATGCGCACCTGGTCATCCC
TCACCCTCCTGGTCGCCACCGCTGCACCCACCCTTCACTCCACTCGCGCT
GCTTGCGATGTGCCATCCCAGGACGTCGGCTGCATGTTTACGCAAGACAT
TATTGCCCCAGAGGGATCGTATAATTCTCTGACCCATCAAGTGGCCTACT
GCAAAATGCAGGGCTACGACACTGTTTCCCGTCAGACATCGCAGGGACCC
TCCGTTTTCACCTCTGGCCTAGTCAAGATTGGGGTGGGACTGGCCCATAA
TCAATTCGGCTCGCGCACGCACCCGTCCTGGATGGATCTGCCGGAGGGAG
CGGCGGCGTGCGGAATGTGTTTGGAGGTGACCAAGGTCTCGAACATGCCC
GAACTATCCGATGATCTCACATCGTGGAACTACGGCAAGAACGTCAGCGT
TCCCTTCCTTGCCATGGTGTTTGATCAATGCACAGACCCCATCTGCGACC
AAACAGGCTTCCTTGACTTCGACATCTACAACGAGCTGCAGCCCGTGACG
AAGGGCAATCCCCGTGTGATGGAATGGCGAGCCGTCGACTGCCCGGTAGG
CGATGAGCATAAGTTGGAGTATTTAATGTGCACGCCTGGCACATGTAACG
CGGAGGATCCCCCTGATGTCCCTCGGTGGGGCGCTCTGTTCAACCCTGAC
TTCTTCGCTGTCTTTGTCCGCAACCAGCGCCTGCCCATCGTCAAGGTGGA
GATGGAGGACCCCAGCACGGGCGCCTACCGAGACATGCCCTTCATCAGCG
GCTTGGGATGGGCCTGGTCGGGGAAAACGTACGAGGTTGCCAAAGCCAAA
GACGTGAAGATCCGCGTCACTGCGGCTGATGGACAGGTCGTCACCGAGAC
GTTCAGCAAGCAGCAATTCTTTGAGTCGCCCGGCGAGCGCGCCTATCGGG
GTGGCCTCCTCTTGCAGGGGACGCAGCAGTTCAACCCATCGCATTTCAAA
GCGCATCACACGGGAGGGAGGAAGGCCGGGCACAGACGACAGTTGTTGCG
AGGCGCGGAGCTGGAGGAGTCGGGAAGGGGGGAGGAGGAAGTAGACTTGC
TTGAATAA
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Synonyms
Publications