NO10G03730, NO10G03730 (gene) Nannochloropsis oceanica

Overview
NameNO10G03730
Unique NameNO10G03730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2596
Alignment locationchr10:1077414..1080009 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1077414..1080009 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G03730 vs. NCBI_GenBank
Match: EWM25570.1 (hypothetical protein Naga_100463g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 122.5 bits (306), Expect = 2.200e-24
Identity = 137/224 (61.16%), Postives = 153/224 (68.30%), Query Frame = 0 
Query:    1 MSTTRHRPATGDENIYGTGRSTNSKGSAAAAGPPTKPGVSSSSSSTIGPSGLTGGKTVARKALGAL----MPSFSVQTEGQEEDQALIKQGLGNKGPRPRRALGEITNRVGAGKS--------RSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSFSD-DXXXXXXWEVERAAGRLGEEEDKLVAIKRATKEKEGEAAFLRELE 212
            MSTTRH P   DEN YG    T  KG+ A    P KP    +SSS IGPSGLTGGK VARKALG+L    +PS S +T GQEEDQ LIKQGLGNK  +PRRALGEITNRVG G +           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        P+FSD +       EVE AAGRLG EE++LVA+KRA +E+  E  FL  ++
Sbjct:    1 MSTTRHIPTLRDENAYGA--HTLHKGNVANVDRPLKP--VGASSSVIGPSGLTGGKIVARKALGSLSGSSLPS-SHKTPGQEEDQTLIKQGLGNKVSKPRRALGEITNRVGPGHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSLLADLPTFSDEEEAGEEPGEVELAAGRLGVEEERLVALKRAARERAEEEQFLSSIK 219
The following BLAST results are available for this feature:
BLAST of NO10G03730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25570.12.200e-2461.16hypothetical protein Naga_100463g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR016ngnoR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03730.1NO10G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03730.1NO10G03730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03730 ID=NO10G03730|Name=NO10G03730|organism=Nannochloropsis oceanica|type=gene|length=2596bp
GTTGTTTCCGTCTCATCTTGATTAGTTTCCCTCACGAGACGACCAACGAC
CACAACTTATAGAGCCACCGGTCAGAAAGCTCCACATTTTCCCTTGGCAT
GCATGCGTGGTAGTTGGATTGGGAATTACCCTCGTACTTTTGGTCTTCTT
TGTGTCGTGCCGCGCACCGCCTTCTTGGAAGCGAGAAGCGACCAGGCAAC
GCGCAGCTCGAGTGTATTACCGGACACACAACGCATTACGCACATATAGC
CACCTCGTTCATCCCACCTATCCTTTCACACACTTCATGGCTTCACATCA
ACCAGACCATCCAAATTCCGCCCGGGAAGCACAAACTAATTTCTCATTCC
TCTCTCGCTCTCATCCACTCTTGCCACAGCAAAGATCGAGACACAAGGTC
ACCTCACATGTCTACCACCCGCCATCGCCCCGCCACGGGTGATGAGAACA
TCTATGGCACGGGACGTTCCACTAACAGTAAAGGCAGCGCCGCTGCCGCC
GGTCCTCCGACCAAGCCAGGGGTGTCTTCCTCTTCCTCCTCTACGATTGG
ACCTTCCGGTCTAACAGGCGGCAAGACCGTGGCTCGCAAAGCCCTGGGTG
CGTTAATGCCTTCCTTCTCGGTGCAGACGGAGGGACAGGAGGAGGACCAA
GCGTTGATTAAGCAAGGTTTAGGGAACAAGGGgtgagtgatcagttggcg
ggggagggaggaaggagagctaggaccattacgtaacgaaggcgtgcatt
cgtgctttcatgctctgaagaagaaaggaagagggtagagtgggctatta
gtggcagtattatgatctcaatccctgttactgtccttattctcccgcct
acaacccatccaaaacagGCCTCGTCCTCGCCGTGCCCTCGGCGAGATTA
CCAACAGGGTGGGAGCAGGCAAAAGCCGGAGCAGTACCTTCTCGTCCTCC
ACAAAGAGTTCCTCCTCTTCTTCATCCTCCTATGCCAAATCCACCATCAA
ATCGTCGTTGTCTGCTTTGTCTTCATCTTCCGTCGCCGCCCCGCCCTCTC
TCCCTCCCTCCCTCCTCGCGGACCTCCCCTCCTTTTCCGACGACGAGGAC
GAGGAGGATGAATGGGAGGTCGAAAGGGCGGCGGGACGATTGGGTGAGGA
AGAGGATAAATTGGTGGCGATTAAACGAGCGACAAAGGAAAAGGAGGGAG
AGGCGGCGTTCTTGCGAGAGCTGGAGGGAGGGAGGAGGAGGAGAGTGGAA
GAGGACCGGGCGCAGGAGCAAGAGCAGAAAGAGGAAGAAGAGTTTGAGAG
GCAGCTGCAGGGGTTGCTATTGCAGGATATTCAAAgtgagtgcggagaaa
ggtgaaaggaagagagggacggagggaggggtgctctatgcttctatctt
catgtcaatcaaaagtaatcctccatgttgtctttccccgtcacctacca
caacttgacctcttgccttttccctccctccctctctacctccctccctc
tctacctccctccctctctacctccctccctctctacctccctccctctc
tacctccctccctctctacctccctccctctctctctccctctgtaaatt
tacacaacagCGCTCATGACCAGCGCGGCGCTGGTGGAGGAGGAGATTGA
GGAAGGGAGGGAGGGCAGGAGTGAGGGAGTGGATGTGACATCGTTAGGTC
CGGCAGTCGACGATTTGGACTTGCTAGAGGATTTCTAGAGAGGGCGTCAA
GGGAGGAGGGAGACGGTGGAAAGCATGCACTACGCCTATTCCTTCTGGCG
TGTAAAGGCGGAGGAGGGGAGGAGGAGAGGAGGAGGAAGGAAGGGGGTAG
GGAGATGTATGAGCATGACGGAGAGGGGCAGAGGGAGAAAGGTGGAGGGG
GGGCAGCAACTTGTCCAGAGAAATTCAATCTCGTAGTGAATTCTACGCAC
GGGAAGGCTAAGAAGAAGAACAAGTGGTAGTAGTCGTCGAGTACGAATAA
GAAAATAAAAATAAGGGGAAAATGGAGCGCAGCAGCGCCAGCAGCAGCCG
CAGGAGCAGCAACAGCCAGCGGAGGAACAAACATCTGAACGTACGCACAC
ATACACACACAGATACGCACACACACACACATACACACACATACACACAC
ATATATATATATATGTATGCACACATACACGCATACGCATACACACACAC
ACTCTTCACACAAGTGCTTTCACACACCATCGCATATCAGCGGCGGTAGC
AGCAGCAGGAGAAGAAGCTGTCACCGGGGAGACGGGAGATGCCTACCAAC
CATATATATATATATATATATATATATATGGCCGTCTCGCAAACTTGCAA
GTAGGAAGAAAGAAAGCCTGTCAACCTTGATTCCTCGAGAACGAGAAGAT
AAGGCTGGGAAAAACAAAGAAGAAAGGAGGAAAGAAAAACATCACAACAC
ACGAGCTCATCAGAAGAAGGACAAAAAAGATACCGCGCGGTTGAAAGAAA
AATCTTTCGACGGAAAACGTTCCTTTTGGTCCACTGGGCCCTTCGTTTCT
CCCCTTTCAGCCCTTTTTCAAATTGTTGTGTTCGATTTAGCTATCG
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protein sequence of NO10G03730.1

>NO10G03730.1-protein ID=NO10G03730.1-protein|Name=NO10G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MSTTRHRPATGDENIYGTGRSTNSKGSAAAAGPPTKPGVSSSSSSTIGPS
GLTGGKTVARKALGALMPSFSVQTEGQEEDQALIKQGLGNKGPRPRRALG
EITNRVGAGKSRSSTFSSSTKSSSSSSSSYAKSTIKSSLSALSSSSVAAP
PSLPPSLLADLPSFSDDEDEEDEWEVERAAGRLGEEEDKLVAIKRATKEK
EGEAAFLRELEGGRRRRVEEDRAQEQEQKEEEEFERQLQGLLLQDIQTLM
TSAALVEEEIEEGREGRSEGVDVTSLGPAVDDLDLLEDF*
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Synonyms
Publications