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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:1077414..1080009 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03730.1 vs.
Match: EWM25570.1 (hypothetical protein Naga_100463g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 173.3 bits (438), Expect = 1.100e-39 Identity = 141/260 (54.23%), Postives = 168/260 (64.62%), Query Frame = 0
Query: 1 MSTTRHRPATGDENIYGTGRSTNSKGSAAAAGPPTKPGVSSSSSSTIGPSGLTGGKTVARKALGAL----MPSFSVQTEGQEEDQALIKQGLGNKGPRPRRALGEITNRVGAGKSRSS--------TFSSSTKSSSSSSSSYAKSTIKSSLSALSSSSVAAPPSLPPSLLADLPSFSDDEDE-EDEWEVERAAGRLGEEEDKLVAIKRATKEKEGEAAFLRELEGGRRRRVEEDRAQEQEQKEEEEFERQLQGLLLQDIQ 248
MSTTRH P DEN YG T KG+ A P KP +SSS IGPSGLTGGK VARKALG+L +PS S +T GQEEDQ LIKQGLGNK +PRRALGEITNRVG G + S T SSS+ SSSSSSSS K T + + S PPSL SLLADLP+FSD+E+ E+ EVE AAGRLG EE++LVA+KRA +E+ E FL ++ G R V+ R E +E+ FER++Q LLL D+Q
Sbjct: 1 MSTTRHIPTLRDENAYGA--HTLHKGNVANVDRPLKP--VGASSSVIGPSGLTGGKIVARKALGSLSGSSLPS-SHKTPGQEEDQTLIKQGLGNKVSKPRRALGEITNRVGPGHNSSGGGKDPYSMTSSSSSSSSSSSSSSSQKPTCRGKKGSTPGLSSGGPPSLSSSLLADLPTFSDEEEAGEEPGEVELAAGRLGVEEERLVALKRAARERAEEEQFLSSIKEGGRGPVDFGR----EDEEDAAFEREMQKLLLADMQ 251
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G03730.1 ID=NO10G03730.1|Name=NO10G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2135bp
GTTGTTTCCGTCTCATCTTGATTAGTTTCCCTCACGAGACGACCAACGAC
CACAACTTATAGAGCCACCGGTCAGAAAGCTCCACATTTTCCCTTGGCAT
GCATGCGTGGTAGTTGGATTGGGAATTACCCTCGTACTTTTGGTCTTCTT
TGTGTCGTGCCGCGCACCGCCTTCTTGGAAGCGAGAAGCGACCAGGCAAC
GCGCAGCTCGAGTGTATTACCGGACACACAACGCATTACGCACATATAGC
CACCTCGTTCATCCCACCTATCCTTTCACACACTTCATGGCTTCACATCA
ACCAGACCATCCAAATTCCGCCCGGGAAGCACAAACTAATTTCTCATTCC
TCTCTCGCTCTCATCCACTCTTGCCACAGCAAAGATCGAGACACAAGGTC
ACCTCACATGTCTACCACCCGCCATCGCCCCGCCACGGGTGATGAGAACA
TCTATGGCACGGGACGTTCCACTAACAGTAAAGGCAGCGCCGCTGCCGCC
GGTCCTCCGACCAAGCCAGGGGTGTCTTCCTCTTCCTCCTCTACGATTGG
ACCTTCCGGTCTAACAGGCGGCAAGACCGTGGCTCGCAAAGCCCTGGGTG
CGTTAATGCCTTCCTTCTCGGTGCAGACGGAGGGACAGGAGGAGGACCAA
GCGTTGATTAAGCAAGGTTTAGGGAACAAGGGGCCTCGTCCTCGCCGTGC
CCTCGGCGAGATTACCAACAGGGTGGGAGCAGGCAAAAGCCGGAGCAGTA
CCTTCTCGTCCTCCACAAAGAGTTCCTCCTCTTCTTCATCCTCCTATGCC
AAATCCACCATCAAATCGTCGTTGTCTGCTTTGTCTTCATCTTCCGTCGC
CGCCCCGCCCTCTCTCCCTCCCTCCCTCCTCGCGGACCTCCCCTCCTTTT
CCGACGACGAGGACGAGGAGGATGAATGGGAGGTCGAAAGGGCGGCGGGA
CGATTGGGTGAGGAAGAGGATAAATTGGTGGCGATTAAACGAGCGACAAA
GGAAAAGGAGGGAGAGGCGGCGTTCTTGCGAGAGCTGGAGGGAGGGAGGA
GGAGGAGAGTGGAAGAGGACCGGGCGCAGGAGCAAGAGCAGAAAGAGGAA
GAAGAGTTTGAGAGGCAGCTGCAGGGGTTGCTATTGCAGGATATTCAAAC
GCTCATGACCAGCGCGGCGCTGGTGGAGGAGGAGATTGAGGAAGGGAGGG
AGGGCAGGAGTGAGGGAGTGGATGTGACATCGTTAGGTCCGGCAGTCGAC
GATTTGGACTTGCTAGAGGATTTCTAGAGAGGGCGTCAAGGGAGGAGGGA
GACGGTGGAAAGCATGCACTACGCCTATTCCTTCTGGCGTGTAAAGGCGG
AGGAGGGGAGGAGGAGAGGAGGAGGAAGGAAGGGGGTAGGGAGATGTATG
AGCATGACGGAGAGGGGCAGAGGGAGAAAGGTGGAGGGGGGGCAGCAACT
TGTCCAGAGAAATTCAATCTCGTAGTGAATTCTACGCACGGGAAGGCTAA
GAAGAAGAACAAGTGGTAGTAGTCGTCGAGTACGAATAAGAAAATAAAAA
TAAGGGGAAAATGGAGCGCAGCAGCGCCAGCAGCAGCCGCAGGAGCAGCA
ACAGCCAGCGGAGGAACAAACATCTGAACGTACGCACACATACACACACA
GATACGCACACACACACACATACACACACATACACACACATATATATATA
TATGTATGCACACATACACGCATACGCATACACACACACACTCTTCACAC
AAGTGCTTTCACACACCATCGCATATCAGCGGCGGTAGCAGCAGCAGGAG
AAGAAGCTGTCACCGGGGAGACGGGAGATGCCTACCAACCATATATATAT
ATATATATATATATATATGGCCGTCTCGCAAACTTGCAAGTAGGAAGAAA
GAAAGCCTGTCAACCTTGATTCCTCGAGAACGAGAAGATAAGGCTGGGAA
AAACAAAGAAGAAAGGAGGAAAGAAAAACATCACAACACACGAGCTCATC
AGAAGAAGGACAAAAAAGATACCGCGCGGTTGAAAGAAAAATCTTTCGAC
GGAAAACGTTCCTTTTGGTCCACTGGGCCCTTCGTTTCTCCCCTTTCAGC
CCTTTTTCAAATTGTTGTGTTCGATTTAGCTATCG back to topprotein sequence of NO10G03730.1 >NO10G03730.1-protein ID=NO10G03730.1-protein|Name=NO10G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MSTTRHRPATGDENIYGTGRSTNSKGSAAAAGPPTKPGVSSSSSSTIGPS
GLTGGKTVARKALGALMPSFSVQTEGQEEDQALIKQGLGNKGPRPRRALG
EITNRVGAGKSRSSTFSSSTKSSSSSSSSYAKSTIKSSLSALSSSSVAAP
PSLPPSLLADLPSFSDDEDEEDEWEVERAAGRLGEEEDKLVAIKRATKEK
EGEAAFLRELEGGRRRRVEEDRAQEQEQKEEEEFERQLQGLLLQDIQTLM
TSAALVEEEIEEGREGRSEGVDVTSLGPAVDDLDLLEDF* back to topmRNA from alignment at chr10:1077414..1080009- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G03730.1 ID=NO10G03730.1|Name=NO10G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2596bp|location=Sequence derived from alignment at chr10:1077414..1080009- (Nannochloropsis oceanica)
GTTGTTTCCGTCTCATCTTGATTAGTTTCCCTCACGAGACGACCAACGAC
CACAACTTATAGAGCCACCGGTCAGAAAGCTCCACATTTTCCCTTGGCAT
GCATGCGTGGTAGTTGGATTGGGAATTACCCTCGTACTTTTGGTCTTCTT
TGTGTCGTGCCGCGCACCGCCTTCTTGGAAGCGAGAAGCGACCAGGCAAC
GCGCAGCTCGAGTGTATTACCGGACACACAACGCATTACGCACATATAGC
CACCTCGTTCATCCCACCTATCCTTTCACACACTTCATGGCTTCACATCA
ACCAGACCATCCAAATTCCGCCCGGGAAGCACAAACTAATTTCTCATTCC
TCTCTCGCTCTCATCCACTCTTGCCACAGCAAAGATCGAGACACAAGGTC
ACCTCACATGTCTACCACCCGCCATCGCCCCGCCACGGGTGATGAGAACA
TCTATGGCACGGGACGTTCCACTAACAGTAAAGGCAGCGCCGCTGCCGCC
GGTCCTCCGACCAAGCCAGGGGTGTCTTCCTCTTCCTCCTCTACGATTGG
ACCTTCCGGTCTAACAGGCGGCAAGACCGTGGCTCGCAAAGCCCTGGGTG
CGTTAATGCCTTCCTTCTCGGTGCAGACGGAGGGACAGGAGGAGGACCAA
GCGTTGATTAAGCAAGGTTTAGGGAACAAGGGGTGAGTGATCAGTTGGCG
GGGGAGGGAGGAAGGAGAGCTAGGACCATTACGTAACGAAGGCGTGCATT
CGTGCTTTCATGCTCTGAAGAAGAAAGGAAGAGGGTAGAGTGGGCTATTA
GTGGCAGTATTATGATCTCAATCCCTGTTACTGTCCTTATTCTCCCGCCT
ACAACCCATCCAAAACAGGCCTCGTCCTCGCCGTGCCCTCGGCGAGATTA
CCAACAGGGTGGGAGCAGGCAAAAGCCGGAGCAGTACCTTCTCGTCCTCC
ACAAAGAGTTCCTCCTCTTCTTCATCCTCCTATGCCAAATCCACCATCAA
ATCGTCGTTGTCTGCTTTGTCTTCATCTTCCGTCGCCGCCCCGCCCTCTC
TCCCTCCCTCCCTCCTCGCGGACCTCCCCTCCTTTTCCGACGACGAGGAC
GAGGAGGATGAATGGGAGGTCGAAAGGGCGGCGGGACGATTGGGTGAGGA
AGAGGATAAATTGGTGGCGATTAAACGAGCGACAAAGGAAAAGGAGGGAG
AGGCGGCGTTCTTGCGAGAGCTGGAGGGAGGGAGGAGGAGGAGAGTGGAA
GAGGACCGGGCGCAGGAGCAAGAGCAGAAAGAGGAAGAAGAGTTTGAGAG
GCAGCTGCAGGGGTTGCTATTGCAGGATATTCAAAGTGAGTGCGGAGAAA
GGTGAAAGGAAGAGAGGGACGGAGGGAGGGGTGCTCTATGCTTCTATCTT
CATGTCAATCAAAAGTAATCCTCCATGTTGTCTTTCCCCGTCACCTACCA
CAACTTGACCTCTTGCCTTTTCCCTCCCTCCCTCTCTACCTCCCTCCCTC
TCTACCTCCCTCCCTCTCTACCTCCCTCCCTCTCTACCTCCCTCCCTCTC
TACCTCCCTCCCTCTCTACCTCCCTCCCTCTCTCTCTCCCTCTGTAAATT
TACACAACAGCGCTCATGACCAGCGCGGCGCTGGTGGAGGAGGAGATTGA
GGAAGGGAGGGAGGGCAGGAGTGAGGGAGTGGATGTGACATCGTTAGGTC
CGGCAGTCGACGATTTGGACTTGCTAGAGGATTTCTAGAGAGGGCGTCAA
GGGAGGAGGGAGACGGTGGAAAGCATGCACTACGCCTATTCCTTCTGGCG
TGTAAAGGCGGAGGAGGGGAGGAGGAGAGGAGGAGGAAGGAAGGGGGTAG
GGAGATGTATGAGCATGACGGAGAGGGGCAGAGGGAGAAAGGTGGAGGGG
GGGCAGCAACTTGTCCAGAGAAATTCAATCTCGTAGTGAATTCTACGCAC
GGGAAGGCTAAGAAGAAGAACAAGTGGTAGTAGTCGTCGAGTACGAATAA
GAAAATAAAAATAAGGGGAAAATGGAGCGCAGCAGCGCCAGCAGCAGCCG
CAGGAGCAGCAACAGCCAGCGGAGGAACAAACATCTGAACGTACGCACAC
ATACACACACAGATACGCACACACACACACATACACACACATACACACAC
ATATATATATATATGTATGCACACATACACGCATACGCATACACACACAC
ACTCTTCACACAAGTGCTTTCACACACCATCGCATATCAGCGGCGGTAGC
AGCAGCAGGAGAAGAAGCTGTCACCGGGGAGACGGGAGATGCCTACCAAC
CATATATATATATATATATATATATATATGGCCGTCTCGCAAACTTGCAA
GTAGGAAGAAAGAAAGCCTGTCAACCTTGATTCCTCGAGAACGAGAAGAT
AAGGCTGGGAAAAACAAAGAAGAAAGGAGGAAAGAAAAACATCACAACAC
ACGAGCTCATCAGAAGAAGGACAAAAAAGATACCGCGCGGTTGAAAGAAA
AATCTTTCGACGGAAAACGTTCCTTTTGGTCCACTGGGCCCTTCGTTTCT
CCCCTTTCAGCCCTTTTTCAAATTGTTGTGTTCGATTTAGCTATCG back to topCoding sequence (CDS) from alignment at chr10:1077414..1080009- >NO10G03730.1 ID=NO10G03730.1|Name=NO10G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr10:1077414..1080009- (Nannochloropsis oceanica)
ATGTCTACCACCCGCCATCGCCCCGCCACGGGTGATGAGAACATCTATGG
CACGGGACGTTCCACTAACAGTAAAGGCAGCGCCGCTGCCGCCGGTCCTC
CGACCAAGCCAGGGGTGTCTTCCTCTTCCTCCTCTACGATTGGACCTTCC
GGTCTAACAGGCGGCAAGACCGTGGCTCGCAAAGCCCTGGGTGCGTTAAT
GCCTTCCTTCTCGGTGCAGACGGAGGGACAGGAGGAGGACCAAGCGTTGA
TTAAGCAAGGTTTAGGGAACAAGGGGCCTCGTCCTCGCCGTGCCCTCGGC
GAGATTACCAACAGGGTGGGAGCAGGCAAAAGCCGGAGCAGTACCTTCTC
GTCCTCCACAAAGAGTTCCTCCTCTTCTTCATCCTCCTATGCCAAATCCA
CCATCAAATCGTCGTTGTCTGCTTTGTCTTCATCTTCCGTCGCCGCCCCG
CCCTCTCTCCCTCCCTCCCTCCTCGCGGACCTCCCCTCCTTTTCCGACGA
CGAGGACGAGGAGGATGAATGGGAGGTCGAAAGGGCGGCGGGACGATTGG
GTGAGGAAGAGGATAAATTGGTGGCGATTAAACGAGCGACAAAGGAAAAG
GAGGGAGAGGCGGCGTTCTTGCGAGAGCTGGAGGGAGGGAGGAGGAGGAG
AGTGGAAGAGGACCGGGCGCAGGAGCAAGAGCAGAAAGAGGAAGAAGAGT
TTGAGAGGCAGCTGCAGGGGTTGCTATTGCAGGATATTCAAACGCTCATG
ACCAGCGCGGCGCTGGTGGAGGAGGAGATTGAGGAAGGGAGGGAGGGCAG
GAGTGAGGGAGTGGATGTGACATCGTTAGGTCCGGCAGTCGACGATTTGG
ACTTGCTAGAGGATTTCTAG back to top
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