NO10G03730.1, NO10G03730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03730.1
Unique NameNO10G03730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2135
Alignment locationchr10:1077414..1080009 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1077414..1080009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO10G03730.1 vs.
Match: EWM25570.1 (hypothetical protein Naga_100463g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 173.3 bits (438), Expect = 1.100e-39
Identity = 141/260 (54.23%), Postives = 168/260 (64.62%), Query Frame = 0 
Query:    1 MSTTRHRPATGDENIYGTGRSTNSKGSAAAAGPPTKPGVSSSSSSTIGPSGLTGGKTVARKALGAL----MPSFSVQTEGQEEDQALIKQGLGNKGPRPRRALGEITNRVGAGKSRSS--------TFSSSTKSSSSSSSSYAKSTIKSSLSALSSSSVAAPPSLPPSLLADLPSFSDDEDE-EDEWEVERAAGRLGEEEDKLVAIKRATKEKEGEAAFLRELEGGRRRRVEEDRAQEQEQKEEEEFERQLQGLLLQDIQ 248
            MSTTRH P   DEN YG    T  KG+ A    P KP    +SSS IGPSGLTGGK VARKALG+L    +PS S +T GQEEDQ LIKQGLGNK  +PRRALGEITNRVG G + S         T SSS+ SSSSSSSS  K T +    +    S   PPSL  SLLADLP+FSD+E+  E+  EVE AAGRLG EE++LVA+KRA +E+  E  FL  ++ G R  V+  R    E +E+  FER++Q LLL D+Q
Sbjct:    1 MSTTRHIPTLRDENAYGA--HTLHKGNVANVDRPLKP--VGASSSVIGPSGLTGGKIVARKALGSLSGSSLPS-SHKTPGQEEDQTLIKQGLGNKVSKPRRALGEITNRVGPGHNSSGGGKDPYSMTSSSSSSSSSSSSSSSQKPTCRGKKGSTPGLSSGGPPSLSSSLLADLPTFSDEEEAGEEPGEVELAAGRLGVEEERLVALKRAARERAEEEQFLSSIKEGGRGPVDFGR----EDEEDAAFEREMQKLLLADMQ 251
The following BLAST results are available for this feature:
BLAST of NO10G03730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000Expect = 1.10e-39 / Id = 54.23SequenceEWM25570.1
Match NameE-valueIdentityDescription
EWM25570.11.100e-3954.23hypothetical protein Naga_100463g1, partial [Nanno... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03730NO10G03730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03730.1NO10G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03730.1.cds1NO10G03730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03730.1.cds2NO10G03730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03730.1.cds3NO10G03730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03730.1 ID=NO10G03730.1|Name=NO10G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2135bp
GTTGTTTCCGTCTCATCTTGATTAGTTTCCCTCACGAGACGACCAACGAC
CACAACTTATAGAGCCACCGGTCAGAAAGCTCCACATTTTCCCTTGGCAT
GCATGCGTGGTAGTTGGATTGGGAATTACCCTCGTACTTTTGGTCTTCTT
TGTGTCGTGCCGCGCACCGCCTTCTTGGAAGCGAGAAGCGACCAGGCAAC
GCGCAGCTCGAGTGTATTACCGGACACACAACGCATTACGCACATATAGC
CACCTCGTTCATCCCACCTATCCTTTCACACACTTCATGGCTTCACATCA
ACCAGACCATCCAAATTCCGCCCGGGAAGCACAAACTAATTTCTCATTCC
TCTCTCGCTCTCATCCACTCTTGCCACAGCAAAGATCGAGACACAAGGTC
ACCTCACATGTCTACCACCCGCCATCGCCCCGCCACGGGTGATGAGAACA
TCTATGGCACGGGACGTTCCACTAACAGTAAAGGCAGCGCCGCTGCCGCC
GGTCCTCCGACCAAGCCAGGGGTGTCTTCCTCTTCCTCCTCTACGATTGG
ACCTTCCGGTCTAACAGGCGGCAAGACCGTGGCTCGCAAAGCCCTGGGTG
CGTTAATGCCTTCCTTCTCGGTGCAGACGGAGGGACAGGAGGAGGACCAA
GCGTTGATTAAGCAAGGTTTAGGGAACAAGGGGCCTCGTCCTCGCCGTGC
CCTCGGCGAGATTACCAACAGGGTGGGAGCAGGCAAAAGCCGGAGCAGTA
CCTTCTCGTCCTCCACAAAGAGTTCCTCCTCTTCTTCATCCTCCTATGCC
AAATCCACCATCAAATCGTCGTTGTCTGCTTTGTCTTCATCTTCCGTCGC
CGCCCCGCCCTCTCTCCCTCCCTCCCTCCTCGCGGACCTCCCCTCCTTTT
CCGACGACGAGGACGAGGAGGATGAATGGGAGGTCGAAAGGGCGGCGGGA
CGATTGGGTGAGGAAGAGGATAAATTGGTGGCGATTAAACGAGCGACAAA
GGAAAAGGAGGGAGAGGCGGCGTTCTTGCGAGAGCTGGAGGGAGGGAGGA
GGAGGAGAGTGGAAGAGGACCGGGCGCAGGAGCAAGAGCAGAAAGAGGAA
GAAGAGTTTGAGAGGCAGCTGCAGGGGTTGCTATTGCAGGATATTCAAAC
GCTCATGACCAGCGCGGCGCTGGTGGAGGAGGAGATTGAGGAAGGGAGGG
AGGGCAGGAGTGAGGGAGTGGATGTGACATCGTTAGGTCCGGCAGTCGAC
GATTTGGACTTGCTAGAGGATTTCTAGAGAGGGCGTCAAGGGAGGAGGGA
GACGGTGGAAAGCATGCACTACGCCTATTCCTTCTGGCGTGTAAAGGCGG
AGGAGGGGAGGAGGAGAGGAGGAGGAAGGAAGGGGGTAGGGAGATGTATG
AGCATGACGGAGAGGGGCAGAGGGAGAAAGGTGGAGGGGGGGCAGCAACT
TGTCCAGAGAAATTCAATCTCGTAGTGAATTCTACGCACGGGAAGGCTAA
GAAGAAGAACAAGTGGTAGTAGTCGTCGAGTACGAATAAGAAAATAAAAA
TAAGGGGAAAATGGAGCGCAGCAGCGCCAGCAGCAGCCGCAGGAGCAGCA
ACAGCCAGCGGAGGAACAAACATCTGAACGTACGCACACATACACACACA
GATACGCACACACACACACATACACACACATACACACACATATATATATA
TATGTATGCACACATACACGCATACGCATACACACACACACTCTTCACAC
AAGTGCTTTCACACACCATCGCATATCAGCGGCGGTAGCAGCAGCAGGAG
AAGAAGCTGTCACCGGGGAGACGGGAGATGCCTACCAACCATATATATAT
ATATATATATATATATATGGCCGTCTCGCAAACTTGCAAGTAGGAAGAAA
GAAAGCCTGTCAACCTTGATTCCTCGAGAACGAGAAGATAAGGCTGGGAA
AAACAAAGAAGAAAGGAGGAAAGAAAAACATCACAACACACGAGCTCATC
AGAAGAAGGACAAAAAAGATACCGCGCGGTTGAAAGAAAAATCTTTCGAC
GGAAAACGTTCCTTTTGGTCCACTGGGCCCTTCGTTTCTCCCCTTTCAGC
CCTTTTTCAAATTGTTGTGTTCGATTTAGCTATCG
back to top

protein sequence of NO10G03730.1

>NO10G03730.1-protein ID=NO10G03730.1-protein|Name=NO10G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MSTTRHRPATGDENIYGTGRSTNSKGSAAAAGPPTKPGVSSSSSSTIGPS
GLTGGKTVARKALGALMPSFSVQTEGQEEDQALIKQGLGNKGPRPRRALG
EITNRVGAGKSRSSTFSSSTKSSSSSSSSYAKSTIKSSLSALSSSSVAAP
PSLPPSLLADLPSFSDDEDEEDEWEVERAAGRLGEEEDKLVAIKRATKEK
EGEAAFLRELEGGRRRRVEEDRAQEQEQKEEEEFERQLQGLLLQDIQTLM
TSAALVEEEIEEGREGRSEGVDVTSLGPAVDDLDLLEDF*
back to top

mRNA from alignment at chr10:1077414..1080009-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03730.1 ID=NO10G03730.1|Name=NO10G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2596bp|location=Sequence derived from alignment at chr10:1077414..1080009- (Nannochloropsis oceanica)
GTTGTTTCCGTCTCATCTTGATTAGTTTCCCTCACGAGACGACCAACGAC
CACAACTTATAGAGCCACCGGTCAGAAAGCTCCACATTTTCCCTTGGCAT
GCATGCGTGGTAGTTGGATTGGGAATTACCCTCGTACTTTTGGTCTTCTT
TGTGTCGTGCCGCGCACCGCCTTCTTGGAAGCGAGAAGCGACCAGGCAAC
GCGCAGCTCGAGTGTATTACCGGACACACAACGCATTACGCACATATAGC
CACCTCGTTCATCCCACCTATCCTTTCACACACTTCATGGCTTCACATCA
ACCAGACCATCCAAATTCCGCCCGGGAAGCACAAACTAATTTCTCATTCC
TCTCTCGCTCTCATCCACTCTTGCCACAGCAAAGATCGAGACACAAGGTC
ACCTCACATGTCTACCACCCGCCATCGCCCCGCCACGGGTGATGAGAACA
TCTATGGCACGGGACGTTCCACTAACAGTAAAGGCAGCGCCGCTGCCGCC
GGTCCTCCGACCAAGCCAGGGGTGTCTTCCTCTTCCTCCTCTACGATTGG
ACCTTCCGGTCTAACAGGCGGCAAGACCGTGGCTCGCAAAGCCCTGGGTG
CGTTAATGCCTTCCTTCTCGGTGCAGACGGAGGGACAGGAGGAGGACCAA
GCGTTGATTAAGCAAGGTTTAGGGAACAAGGGGTGAGTGATCAGTTGGCG
GGGGAGGGAGGAAGGAGAGCTAGGACCATTACGTAACGAAGGCGTGCATT
CGTGCTTTCATGCTCTGAAGAAGAAAGGAAGAGGGTAGAGTGGGCTATTA
GTGGCAGTATTATGATCTCAATCCCTGTTACTGTCCTTATTCTCCCGCCT
ACAACCCATCCAAAACAGGCCTCGTCCTCGCCGTGCCCTCGGCGAGATTA
CCAACAGGGTGGGAGCAGGCAAAAGCCGGAGCAGTACCTTCTCGTCCTCC
ACAAAGAGTTCCTCCTCTTCTTCATCCTCCTATGCCAAATCCACCATCAA
ATCGTCGTTGTCTGCTTTGTCTTCATCTTCCGTCGCCGCCCCGCCCTCTC
TCCCTCCCTCCCTCCTCGCGGACCTCCCCTCCTTTTCCGACGACGAGGAC
GAGGAGGATGAATGGGAGGTCGAAAGGGCGGCGGGACGATTGGGTGAGGA
AGAGGATAAATTGGTGGCGATTAAACGAGCGACAAAGGAAAAGGAGGGAG
AGGCGGCGTTCTTGCGAGAGCTGGAGGGAGGGAGGAGGAGGAGAGTGGAA
GAGGACCGGGCGCAGGAGCAAGAGCAGAAAGAGGAAGAAGAGTTTGAGAG
GCAGCTGCAGGGGTTGCTATTGCAGGATATTCAAAGTGAGTGCGGAGAAA
GGTGAAAGGAAGAGAGGGACGGAGGGAGGGGTGCTCTATGCTTCTATCTT
CATGTCAATCAAAAGTAATCCTCCATGTTGTCTTTCCCCGTCACCTACCA
CAACTTGACCTCTTGCCTTTTCCCTCCCTCCCTCTCTACCTCCCTCCCTC
TCTACCTCCCTCCCTCTCTACCTCCCTCCCTCTCTACCTCCCTCCCTCTC
TACCTCCCTCCCTCTCTACCTCCCTCCCTCTCTCTCTCCCTCTGTAAATT
TACACAACAGCGCTCATGACCAGCGCGGCGCTGGTGGAGGAGGAGATTGA
GGAAGGGAGGGAGGGCAGGAGTGAGGGAGTGGATGTGACATCGTTAGGTC
CGGCAGTCGACGATTTGGACTTGCTAGAGGATTTCTAGAGAGGGCGTCAA
GGGAGGAGGGAGACGGTGGAAAGCATGCACTACGCCTATTCCTTCTGGCG
TGTAAAGGCGGAGGAGGGGAGGAGGAGAGGAGGAGGAAGGAAGGGGGTAG
GGAGATGTATGAGCATGACGGAGAGGGGCAGAGGGAGAAAGGTGGAGGGG
GGGCAGCAACTTGTCCAGAGAAATTCAATCTCGTAGTGAATTCTACGCAC
GGGAAGGCTAAGAAGAAGAACAAGTGGTAGTAGTCGTCGAGTACGAATAA
GAAAATAAAAATAAGGGGAAAATGGAGCGCAGCAGCGCCAGCAGCAGCCG
CAGGAGCAGCAACAGCCAGCGGAGGAACAAACATCTGAACGTACGCACAC
ATACACACACAGATACGCACACACACACACATACACACACATACACACAC
ATATATATATATATGTATGCACACATACACGCATACGCATACACACACAC
ACTCTTCACACAAGTGCTTTCACACACCATCGCATATCAGCGGCGGTAGC
AGCAGCAGGAGAAGAAGCTGTCACCGGGGAGACGGGAGATGCCTACCAAC
CATATATATATATATATATATATATATATGGCCGTCTCGCAAACTTGCAA
GTAGGAAGAAAGAAAGCCTGTCAACCTTGATTCCTCGAGAACGAGAAGAT
AAGGCTGGGAAAAACAAAGAAGAAAGGAGGAAAGAAAAACATCACAACAC
ACGAGCTCATCAGAAGAAGGACAAAAAAGATACCGCGCGGTTGAAAGAAA
AATCTTTCGACGGAAAACGTTCCTTTTGGTCCACTGGGCCCTTCGTTTCT
CCCCTTTCAGCCCTTTTTCAAATTGTTGTGTTCGATTTAGCTATCG
back to top

Coding sequence (CDS) from alignment at chr10:1077414..1080009-

>NO10G03730.1 ID=NO10G03730.1|Name=NO10G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr10:1077414..1080009- (Nannochloropsis oceanica)
ATGTCTACCACCCGCCATCGCCCCGCCACGGGTGATGAGAACATCTATGG
CACGGGACGTTCCACTAACAGTAAAGGCAGCGCCGCTGCCGCCGGTCCTC
CGACCAAGCCAGGGGTGTCTTCCTCTTCCTCCTCTACGATTGGACCTTCC
GGTCTAACAGGCGGCAAGACCGTGGCTCGCAAAGCCCTGGGTGCGTTAAT
GCCTTCCTTCTCGGTGCAGACGGAGGGACAGGAGGAGGACCAAGCGTTGA
TTAAGCAAGGTTTAGGGAACAAGGGGCCTCGTCCTCGCCGTGCCCTCGGC
GAGATTACCAACAGGGTGGGAGCAGGCAAAAGCCGGAGCAGTACCTTCTC
GTCCTCCACAAAGAGTTCCTCCTCTTCTTCATCCTCCTATGCCAAATCCA
CCATCAAATCGTCGTTGTCTGCTTTGTCTTCATCTTCCGTCGCCGCCCCG
CCCTCTCTCCCTCCCTCCCTCCTCGCGGACCTCCCCTCCTTTTCCGACGA
CGAGGACGAGGAGGATGAATGGGAGGTCGAAAGGGCGGCGGGACGATTGG
GTGAGGAAGAGGATAAATTGGTGGCGATTAAACGAGCGACAAAGGAAAAG
GAGGGAGAGGCGGCGTTCTTGCGAGAGCTGGAGGGAGGGAGGAGGAGGAG
AGTGGAAGAGGACCGGGCGCAGGAGCAAGAGCAGAAAGAGGAAGAAGAGT
TTGAGAGGCAGCTGCAGGGGTTGCTATTGCAGGATATTCAAACGCTCATG
ACCAGCGCGGCGCTGGTGGAGGAGGAGATTGAGGAAGGGAGGGAGGGCAG
GAGTGAGGGAGTGGATGTGACATCGTTAGGTCCGGCAGTCGACGATTTGG
ACTTGCTAGAGGATTTCTAG
back to top
Synonyms
Publications