NO10G03710, NO10G03710 (gene) Nannochloropsis oceanica

Overview
NameNO10G03710
Unique NameNO10G03710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2430
Alignment locationchr10:1070744..1073173 -

Link to JBrowse

Properties
Property NameValue
DescriptionRegulator of chromosome condensation/beta-lactamase-inhibitor protein II
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1070744..1073173 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II
IPR000408Reg_chr_condens
Homology
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BLAST of NO10G03710 vs. NCBI_GenBank
Match: EWM25565.1 (Regulator of chromosome condensation/beta-lactamase-inhibitor protein II [Nannochloropsis gaditana])

HSP 1 Score: 206.8 bits (525), Expect = 1.800e-49
Identity = 149/284 (52.46%), Postives = 173/284 (60.92%), Query Frame = 0 
Query:  119 HKAYVWGDIRWLQVPSSXXXXXXXXXXXXXXXXXXXXXXTNVRALAFGPSFAAALLQDGSVQWKSAQTEKFMPLALPRGERAVKVECTSEKIYVLTSSGRVFFWSITRLIRR-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDSHVVITSLSAGHQHVLMTTAEGTVLGVGSNGQGQLGLPSSFSRVTLEEPRELXXXXXXXXXXXXXXVRVVAGHAHSFVVCMREGGREGGKEVEERKVIYGFGCDRWLQLGLGEAWAS 386
            ++AYVWGD RWLQ PSS                       +VR+LAFGPSFAA L +DG+V WKSA++  F+PLA+P GE A ++ CT + IY LT++GRVFFWS+  L+R                                     XXXXXXXXXXXXXXXXX  SHVVIT ++AGH HVLMTT +GTVLGVGSN QGQLG P++ +  T  EPRE+   XXXXXXXXXXX RV AGHAHSFVVC REG            VIY FGCDRWLQLGLG    S
Sbjct:  151 YRAYVWGDARWLQPPSS-------TLSASLTTTPLSLPFPDVRSLAFGPSFAAILRRDGTVHWKSARSPSFLPLAMPVGEHADRIVCTRDTIYALTTNGRVFFWSMPGLLRSLRTASTASSPPSSSTPGLPLEFASLAPRPTTDAPPSXXXXXXXXXXXXXXXXXXXSHVVITGIAAGHDHVLMTTRDGTVLGVGSNAQGQLGFPATNAAFT--EPREIPFFXXXXXXXXXXXXRVEAGHAHSFVVCEREGXXXXXXXXXXXXVIYAFGCDRWLQLGLGRCLES 425
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BLAST of NO10G03710 vs. NCBI_GenBank
Match: EWM25566.1 (Regulator of chromosome condensation/beta-lactamase-inhibitor protein II [Nannochloropsis gaditana])

HSP 1 Score: 206.8 bits (525), Expect = 1.800e-49
Identity = 149/284 (52.46%), Postives = 173/284 (60.92%), Query Frame = 0 
Query:  119 HKAYVWGDIRWLQVPSSXXXXXXXXXXXXXXXXXXXXXXTNVRALAFGPSFAAALLQDGSVQWKSAQTEKFMPLALPRGERAVKVECTSEKIYVLTSSGRVFFWSITRLIRR-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDSHVVITSLSAGHQHVLMTTAEGTVLGVGSNGQGQLGLPSSFSRVTLEEPRELXXXXXXXXXXXXXXVRVVAGHAHSFVVCMREGGREGGKEVEERKVIYGFGCDRWLQLGLGEAWAS 386
            ++AYVWGD RWLQ PSS                       +VR+LAFGPSFAA L +DG+V WKSA++  F+PLA+P GE A ++ CT + IY LT++GRVFFWS+  L+R                                     XXXXXXXXXXXXXXXXX  SHVVIT ++AGH HVLMTT +GTVLGVGSN QGQLG P++ +  T  EPRE+   XXXXXXXXXXX RV AGHAHSFVVC REG            VIY FGCDRWLQLGLG    S
Sbjct:   90 YRAYVWGDARWLQPPSS-------TLSASLTTTPLSLPFPDVRSLAFGPSFAAILRRDGTVHWKSARSPSFLPLAMPVGEHADRIVCTRDTIYALTTNGRVFFWSMPGLLRSLRTASTASSPPSSSTPGLPLEFASLAPRPTTDAPPSXXXXXXXXXXXXXXXXXXXSHVVITGIAAGHDHVLMTTRDGTVLGVGSNAQGQLGFPATNAAFT--EPREIPFFXXXXXXXXXXXXRVEAGHAHSFVVCEREGXXXXXXXXXXXXVIYAFGCDRWLQLGLGRCLES 364
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BLAST of NO10G03710 vs. NCBI_GenBank
Match: OAJ43775.1 (hypothetical protein BDEG_27095 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 67.0 bits (162), Expect = 2.200e-7
Identity = 93/374 (24.87%), Postives = 142/374 (37.97%), Query Frame = 0 
Query:  160 VRALAFGPSFAAALLQDGS-VQWKSAQTEKFMPLALPRGERAVKVECTSEKIYVLTSSGRVFFWSITRLIRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDSHVVITSLSAGHQHVLMTTAEGTVLGV----GSNGQGQLGLPSSFSRVTLEEPRELXXXXXXXXXXXXXXVRVVAGHAHSFVVCMREGGREGGKEVEERKVIYGFGCDRWLQLGLGEAWASRGGPLC-----FRPQQLHTLFSLPLSPS--SSTLTLQSLAAGGDHSLFLLQGEGGREGGKGQKLLAAGHGQWGQLGTNQRVHAGGPLQVAFP--------------SRAPILQVAVGRDHCLLLTGEKEGEGGREG--GWVYG 506
            +R LAFG + AAA+ + G+ +QW  + +     L   +    VKV C S+K Y L+ +G ++         +                                          ITS+S G  H++  +  G          +N  GQLGL      V + +                   +V AG +HS +      G   G+        +GFG +R+ QLG+G         LC       P Q+ T++S    P+  S       +AAGGD +LF++      +  K  ++LA+GHGQ+GQLGT    H      +  P              S   + +V VG  HC ++     GE G+ G  GWV G
Sbjct:  147 LRDLAFGDTHAAAIDEHGNLLQWGRSMSSDQPKLTFTQ-HNLVKVTCASQKTYALSRNGMIYEIDSDPSYSKVTPLKLPAGSAWGER---------------------------ITSISCGSSHLIAVSNTGRAYSFACDSNANKCGQLGL----GHVNIVDEDSFVLNRISGLSMCD---KVAAGRSHSII------GTTDGR-------AFGFGQNRFGQLGIG---------LCKDIIHASPVQIDTIWSDSGKPTQKSPDSKCTHIAAGGDTTLFVV------DTPKTTRVLASGHGQFGQLGTGNFNHTMATPSLIKPLSNLVEYDSIQHKISPIRVRKVCVGDVHCCVVMNNSIGEHGQVGLSGWVSG 457
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BLAST of NO10G03710 vs. NCBI_GenBank
Match: AOF83638.1 (regulator of chromosome condensation (RCC1) repeat family protein [Methyloversatilis sp. RAC08])

HSP 1 Score: 65.9 bits (159), Expect = 4.800e-7
Identity = 75/245 (30.61%), Postives = 99/245 (40.41%), Query Frame = 0 
Query:  269 SHVVITSLSAGHQHVLMTTAEGTVLGVGSNGQGQLGLPSSFSRVTLEEPRELXXXXXXXXXXXXXXVRVVAGHAHSFVVCMREGGREGGKEVEERKVIYGFGCDRWLQLGLGEAWASRGGPLCFRPQQLHTLFSLPLSPSSSTLTLQSLAAGGDHSLFLLQGEGGREGGKGQKLLAAGHGQWGQLGTNQRVHAGGPLQVAFPSRAPILQVAVGRDHCLLLTGEKEGEGGREGGWVYGWGRNQKRQ 514
            S  V  +L+AG  H L   A+GT+ G G+N  GQLG  S+ +R T                     + V AG AHS V+     G +G         +Y +G +   QLG G     R  P+           SLP   S+       +AAG  HSL +         G   KL A G+  +GQLG         P+QV+ P     L V+ GR H  L TG          G +Y WG N +RQ
Sbjct:  106 SFEVTAALAAGGGHSLEIRADGTLHGWGANASGQLGDGSTMTRPT---------PVPVSLPAGVSALSVAAGGAHSLVL-----GSDG--------KLYAWGSNAEGQLGDGST-TQRTTPV---------QVSLPAGVSA-----LGIAAGDGHSLAM---------GSDGKLYAWGNNDFGQLGDGGVQQRATPVQVSLPVGVSALSVSAGRVHS-LATG--------SDGKLYAWGSNTRRQ 295
The following BLAST results are available for this feature:
BLAST of NO10G03710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25565.11.800e-4952.46Regulator of chromosome condensation/beta-lactamas... [more]
EWM25566.11.800e-4952.46Regulator of chromosome condensation/beta-lactamas... [more]
OAJ43775.12.200e-724.87hypothetical protein BDEG_27095 [Batrachochytrium ... [more]
AOF83638.14.800e-730.61regulator of chromosome condensation (RCC1) repeat... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR016ngnoR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001225NSK001225Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03710.2NO10G03710.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G03710.1NO10G03710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100664g1gene4942Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03710.2NO10G03710.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G03710.1NO10G03710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03710 ID=NO10G03710|Name=NO10G03710|organism=Nannochloropsis oceanica|type=gene|length=2430bp
AAACAAACAGCACATAGACGATGCTTCGTCTAACCATTTACTCCTGTCGG
AAGGCCTCTGCAGCATCTGGACCTCGCCTTGGACGTGTCCTCTTCGGTTG
CAATACAGGTAAGTCGTGTACGTGTCATGATGATGGGCCACATCCCTTCA
AAGGAAATCATCGACCTTGCTTACTATGTCATCACTCCGCCGCCTTCCTA
GAAGACCACCAGCAGAGTATTGGTAGGGCTATAGTCGCTGCTGCTGCCAC
CGCAGCCGTGCTGGTGGTCTGCAACCCCCCTGCTGCCTCTTCGTCTGCCT
CTGCAACGGACACCCACACCACCATCGCCACCACCGTCACCACCCTCCCC
ACCAAGAAACGAGGACAACAACAGCACAAAGCCTATGTCTGGGGAGATAT
CCGCTGGCTCCAAGTTCCATCCTCCTCTTCCTCCCCCTCCTATTCTTCCT
CCACCAATGCCATTACCACCACCCCCCTCCCACTCCCCTTCACTAACGTC
CGCGCGCTTGCCTTCGGCCCTTCATTTGCCGCTGCTCTTCTACAGGACGG
GAGCGTACAATGGAAGAGCGCCCAAACCGAGAAATTTATGCCCTTGGCCT
TGCCTCGCGGAGAGCGAGCAGTAAAAGTGGAATGTACATCCGAAAAGgta
agatgtcgttgggttgttacatccattggttatgacgtagaaggactttc
ggcgtctcgacctaagaccccagtgatctttgccattctctaattttcag
ctcaatcattccctgctcccctcctctctctctttctctattatccttcc
tcccttccttctttcctcctcctccctccacaagATTTACGTGCTCACAT
CGTCTGGTCGTGTCTTTTTTTGGTCCATCACTCGACTTATCCGTCGAACA
GTCTCCTCCTCCTCCTCCTCCTCCCCTTTGTCCTCACCCTCTCCTGTACC
TCCTTCTGAATATGCGAGCTTAGCCGCCTTCTCCAACTCCTCCTCCTCCT
CCACAATCGATTCGCATGTTGTCATCACCTCTCTCTCAGCCGGACATCAG
CATGTTCTCATGACGACTGCCGAAGGAACAGTgtacgtatgcttgacccc
tctctccctccctccctcccttctcggtactttacaatgcctcctgctgt
ctcaaccctccctccctccctctagACTGGGTGTGGGCAGCAACGGTCAA
GGCCAACTAGGTCTCCCTTCCTCCTTCAGCAGGGTCACTCTTGAAGAACC
ACGCGAGCTCCCCTTCTTCCTCCCTCCCTCTCTCCCTCCCTCCCTCCGTC
CCGTCCGCGTCGTGGCCGGGCATGCTCACTCCTTTGTGGTGTGCATGAGG
GAGGGAGGAAGGGAGGGCGGGAAGGAGGTGGAGGAAAGGAAGGTCATTTA
TGGCTTTGGATGCGACCGGTGGTTGCAGCTGGGTCTTGgtacgtcccgat
gggccttttctccctccctctctccctccttctcattctcttcttcactt
catccctccctccctccctccctccttccctccctccctccctccctccc
tccctccctccctcctccctccttcctcacagGCGAAGCCTGGGCATCTC
GTGGCGGCCCCCTCTGCTTCCGGCCCCAACAACTCCACACCCTCTTCTCC
CTCCCTCTCTCCCCCTCTTCCTCTACACTGACACTGCAATCTCTGGCAGC
GGGGGGGGATCACTCCCTCTTCCTCCTCCAGGGAGAAGGAGGGCGGGAGG
GAGGGAAGGGGCAGAAGCTGTTGGCGGCGGGGCATGGGCAGTGGGGCCAG
CTGGGGACGAATCAACGAGTTCACGCAGGAGGCCCGTTGCAGgtacgtag
gaaagaagggagggaggctgggaggctgggaggggaaggagtggttattg
agcgttcttcttgtctgtttctgagtcattcaggatatatccttccctgc
ctcccttcctccctccctcccttagGTCGCCTTCCCTTCCCGTGCGCCTA
TTTTGCAAGTGGCTGTTGGGCGCGACCACTGCCTGCTCTTAACAGGAGAG
AAAGAGGGGGAGGGAGGGAGGGAGGGTGGGTGGGTGTATGGATGGGGGAG
GAATCAGAAGAGGCAGGCACATTATGCTTGTCCGTGTGAAGGGACGAAAG
GGGACTTGTTGCAGCCGGTGTTGGTGCCCTTGTTCGAGGTGGGGGGGGAA
GAAGGAAGAGAGGGAGGGGAGGGACGGGTGGAGGGGGTATATGCAGGGTA
TGATTCGAGTGGCGTGGTGATATGTGAGCCAGGTCGGGAAGAAGGGAGGG
GAGAGGAATAGAAAGGGAAAGTGGAGCCAGGAGTCGACGGCTGTAGGTGG
GCCTGAGAGTGATAAAGAAGGTCGGAGGCATGACGCATGGTCTAAGTTTG
AGGTGATGGATTGGAAGGCAAGATACGAAG
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protein sequence of NO10G03710.2

>NO10G03710.2-protein ID=NO10G03710.2-protein|Name=NO10G03710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=609bp
MLRLTIYSCRKASAASGPRLGRVLFGCNTGKSCTCHDDGPHPFKGNHRPC
LLCHHSAAFLEDHQQSIGRAIVAAAATAAVLVVCNPPAASSSASATDTHT
TIATTVTTLPTKKRGQQQHKAYVWGDIRWLQVPSSSSSPSYSSSTNAITT
TPLPLPFTNVRALAFGPSFAAALLQDGSVQWKSAQTEKFMPLALPRGERA
VKVECTSEKIYVLTSSGRVFFWSITRLIRRTVSSSSSSSPLSSPSPVPPS
EYASLAAFSNSSSSSTIDSHVVITSLSAGHQHVLMTTAEGTVYVCLTPLS
LPPSLLGTLQCLLLSQPSLPPSRLGVGSNGQGQLGLPSSFSRVTLEEPRE
LPFFLPPSLPPSLRPVRVVAGHAHSFVVCMREGGREGGKEVEERKVIYGF
GCDRWLQLGLGEAWASRGGPLCFRPQQLHTLFSLPLSPSSSTLTLQSLAA
GGDHSLFLLQGEGGREGGKGQKLLAAGHGQWGQLGTNQRVHAGGPLQVAF
PSRAPILQVAVGRDHCLLLTGEKEGEGGREGGWVYGWGRNQKRQAHYACP
CEGTKGDLLQPVLVPLFEVGGEEGREGGEGRVEGVYAGYDSSGVVICEPG
REEGRGEE*
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protein sequence of NO10G03710.1

>NO10G03710.1-protein ID=NO10G03710.1-protein|Name=NO10G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MLRLTIYSCRKASAASGPRLGRVLFGCNTGKSCTCHDDGPHPFKGNHRPC
LLCHHSAAFLEDHQQSIGRAIVAAAATAAVLVVCNPPAASSSASATDTHT
TIATTVTTLPTKKRGQQQHKAYVWGDIRWLQVPSSSSSPSYSSSTNAITT
TPLPLPFTNVRALAFGPSFAAALLQDGSVQWKSAQTEKFMPLALPRGERA
VKVECTSEKIYVLTSSGRVFFWSITRLIRRTVSSSSSSSPLSSPSPVPPS
EYASLAAFSNSSSSSTIDSHVVITSLSAGHQHVLMTTAEGTVLGVGSNGQ
GQLGLPSSFSRVTLEEPRELPFFLPPSLPPSLRPVRVVAGHAHSFVVCMR
EGGREGGKEVEERKVIYGFGCDRWLQLGLGEAWASRGGPLCFRPQQLHTL
FSLPLSPSSSTLTLQSLAAGGDHSLFLLQGEGGREGGKGQKLLAAGHGQW
GQLGTNQRVHAGGPLQVAFPSRAPILQVAVGRDHCLLLTGEKEGEGGREG
GWVYGWGRNQKRQAHYACPCEGTKGDLLQPVLVPLFEVGGEEGREGGEGR
VEGVYAGYDSSGVVICEPGREEGRGEE*
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Synonyms
Publications