NO10G03530, NO10G03530 (gene) Nannochloropsis oceanica

Overview
NameNO10G03530
Unique NameNO10G03530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length952
Alignment locationchr10:1005140..1006091 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1005140..1006091 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G03530 vs. NCBI_GenBank
Match: EWM25323.1 (hypothetical protein Naga_100281g10 [Nannochloropsis gaditana])

HSP 1 Score: 83.2 bits (204), Expect = 9.000e-13
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 0 
Query:   91 ANLAGLRVCSPVDGPDLERMVAGSSTCGVILLTKGSMVPYFTENTMVVSTRKIIVGHPIDLPQIRTVGKLERVFDVVSG 170
            ANLAGL+VC P +G +L+ M    S+C VI+L KGS   Y   +T++V++RKI++GHPIDLPQI    ++ R+F+V  G
Sbjct:  153 ANLAGLQVCYPQNGEELKGMTESGSSCSVIILKKGSSDKYTLPSTVIVTSRKIVLGHPIDLPQIHPDKEVYRLFEVKPG 231
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BLAST of NO10G03530 vs. NCBI_GenBank
Match: XP_005854415.1 (hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526] >EKU21941.1 hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-12
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 0 
Query:   91 ANLAGLRVCSPVDGPDLERMVAGSSTCGVILLTKGSMVPYFTENTMVVSTRKIIVGHPIDLPQIRTVGKLERVFDVVSG 170
            ANLAGL+VC P +G +L+ M    S+C VI+L KGS   Y   +T++V++RKI++GHPIDLPQI     + R+F+V  G
Sbjct:  153 ANLAGLQVCYPQNGEELKGMTESGSSCSVIILKKGSSDKYTLPSTVIVTSRKIVLGHPIDLPQIHPDNGVYRLFEVKPG 231
[Close]
BLAST of NO10G03530 vs. NCBI_GenBank
Match: XP_005853421.1 (hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526] >EKU22940.1 hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.9 bits (198), Expect = 4.500e-12
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0 
Query:   91 ANLAGLRVCSPVDGPDLERMVAGSSTCGVILLTKGSMVPYFTENTMVVSTRKIIVGHPIDLPQIRTVGKLERVFDVVSGA 171
            A+LAGL+VC P  GP+L+ MV   S+C V++L KGS   Y   +T++V++  II+GHPID PQI     + R+FDV +G+
Sbjct:  155 ASLAGLQVCYPETGPELKAMVESGSSCSVVILKKGSSYIYLLPSTVMVTSSVIILGHPIDPPQIHPEKGVYRLFDVAAGS 234
[Close]
BLAST of NO10G03530 vs. NCBI_GenBank
Match: EWM25326.1 (hypothetical protein Naga_100880g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 80.9 bits (198), Expect = 4.500e-12
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0 
Query:   91 ANLAGLRVCSPVDGPDLERMVAGSSTCGVILLTKGSMVPYFTENTMVVSTRKIIVGHPIDLPQIRTVGKLERVFDVVSGA 171
            A+LAGL+VC P  GP+L+ MV   S+C V++L KGS   Y   +T++V++  II+GHPID PQI     + R+FDV +G+
Sbjct:  155 ASLAGLQVCYPETGPELKAMVESGSSCSVVILKKGSSYIYLLPSTVMVTSSVIILGHPIDPPQIHPEKGVYRLFDVAAGS 234
The following BLAST results are available for this feature:
BLAST of NO10G03530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25323.19.000e-1349.37hypothetical protein Naga_100281g10 [Nannochlorops... [more]
XP_005854415.11.200e-1249.37hypothetical protein NGA_0231400, partial [Nannoch... [more]
XP_005853421.14.500e-1247.50hypothetical protein NGA_0438900, partial [Nannoch... [more]
EWM25326.14.500e-1247.50hypothetical protein Naga_100880g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03530.1NO10G03530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03530.1NO10G03530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03530 ID=NO10G03530|Name=NO10G03530|organism=Nannochloropsis oceanica|type=gene|length=952bp
ATGGGAGACCTTCCAGGCCTTGTGAAGGATTCAGgtgagaaaacataagg
gaggacggcaggaaatggagggtgcacaccctgtgcgcagaactgacccc
ctgagttgacctcttggagctctagtggtggtagtgctggtggtgctgcc
cgcactatctgaatgtgtacaatgtcgagccccctcattgaatgtatctt
cttatgccttcgacgaacgtatcttgtgtccctgccattctcttcttggc
cgctttaatcgcatcaagggcagctccgacacctccggtgcaccgattct
ttgccggctttgcttccctaactcgctccttttgccctctccttttcccc
ctcttgcaccgctctgatgatcagcagcattaccccttaccataacgatt
caatcgtttctctgacacatctccgtttcccacctccctctctcctgcgc
tacagTGCTGTCAACCAACGCGGGCACCACCGGTGCCGCTCCGAAATCCG
TAGGTACGACGGTGACGCCCGCTGTCCCCACAGCATCGAAGGCAGCGCCT
GCTGAGGGTACTGGCGACCTCACGTTTCAGAACTTCCTCGAAACCGGCAC
GGTGGGAGGCGTTGGCCTCGGCGCGGCACTGGGTGCTTTGCCCGGGGCCT
CGACCGTGAATGGAGCCTTCAACGGCTTGGCGAGTAATTTGGCCAACCTG
GCAGGCCTTCGTGTCTGCTCTCCCGTGGATGGTCCTGATCTGGAGCGAAT
GGTGGCGGGCTCGAGCACTTGCGGCGTCATTCTCCTGACGAAGGGCTCTA
TGGTCCCATACTTCACGGAGAACACGATGGTTGTGTCAACCCGCAAGATT
ATCGTGGGCCACCCTATTGACCTTCCTCAAATTAGGACGGTAGGGAAACT
AGAGCGGGTCTTTGACGTGGTGTCGGGGGCTCCTTGGACATTCGTTTCGT
GA
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protein sequence of NO10G03530.1

>NO10G03530.1-protein ID=NO10G03530.1-protein|Name=NO10G03530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MGDLPGLVKDSVLSTNAGTTGAAPKSVGTTVTPAVPTASKAAPAEGTGDL
TFQNFLETGTVGGVGLGAALGALPGASTVNGAFNGLASNLANLAGLRVCS
PVDGPDLERMVAGSSTCGVILLTKGSMVPYFTENTMVVSTRKIIVGHPID
LPQIRTVGKLERVFDVVSGAPWTFVS*
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Synonyms
Publications