NO10G03530.1, NO10G03530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03530.1
Unique NameNO10G03530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length531
Alignment locationchr10:1005140..1006091 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1005140..1006091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03530.1 vs.
Match: EWM25323.1 (hypothetical protein Naga_100281g10 [Nannochloropsis gaditana])

HSP 1 Score: 109.0 bits (271), Expect = 1.500e-20
Identity = 65/148 (43.92%), Postives = 90/148 (60.81%), Query Frame = 0 
Query:   22 AAPKSVGTTVTPAVPTASKAAPAEGTGDLTFQNFLETGTVGGVGLGAALGALPGASTVNGAFNGLASNLANLAGLRVCSPVDGPDLERMVAGSSTCGVILLTKGSMVPYFTENTMVVSTRKIIVGHPIDLPQIRTVGKLERVFDVVSG 170
            +AP +V   V   V  +  +APA  T        L  G      LG   GALPGA+ +NGAFN LA++ ANLAGL+VC P +G +L+ M    S+C VI+L KGS   Y   +T++V++RKI++GHPIDLPQI    ++ R+F+V  G
Sbjct:   84 SAPATVVEPVKAPVSESKPSAPATTTKVDDSDKILTFGDGERNPLGPLFGALPGAAAINGAFNTLAASAANLAGLQVCYPQNGEELKGMTESGSSCSVIILKKGSSDKYTLPSTVIVTSRKIVLGHPIDLPQIHPDKEVYRLFEVKPG 231
The following BLAST results are available for this feature:
BLAST of NO10G03530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25323.11.500e-2043.92hypothetical protein Naga_100281g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03530NO10G03530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03530.1NO10G03530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03530.1.cds1NO10G03530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03530.1.cds2NO10G03530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03530.1 ID=NO10G03530.1|Name=NO10G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=531bp
ATGGGAGACCTTCCAGGCCTTGTGAAGGATTCAGTGCTGTCAACCAACGC
GGGCACCACCGGTGCCGCTCCGAAATCCGTAGGTACGACGGTGACGCCCG
CTGTCCCCACAGCATCGAAGGCAGCGCCTGCTGAGGGTACTGGCGACCTC
ACGTTTCAGAACTTCCTCGAAACCGGCACGGTGGGAGGCGTTGGCCTCGG
CGCGGCACTGGGTGCTTTGCCCGGGGCCTCGACCGTGAATGGAGCCTTCA
ACGGCTTGGCGAGTAATTTGGCCAACCTGGCAGGCCTTCGTGTCTGCTCT
CCCGTGGATGGTCCTGATCTGGAGCGAATGGTGGCGGGCTCGAGCACTTG
CGGCGTCATTCTCCTGACGAAGGGCTCTATGGTCCCATACTTCACGGAGA
ACACGATGGTTGTGTCAACCCGCAAGATTATCGTGGGCCACCCTATTGAC
CTTCCTCAAATTAGGACGGTAGGGAAACTAGAGCGGGTCTTTGACGTGGT
GTCGGGGGCTCCTTGGACATTCGTTTCGTGA
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protein sequence of NO10G03530.1

>NO10G03530.1-protein ID=NO10G03530.1-protein|Name=NO10G03530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MGDLPGLVKDSVLSTNAGTTGAAPKSVGTTVTPAVPTASKAAPAEGTGDL
TFQNFLETGTVGGVGLGAALGALPGASTVNGAFNGLASNLANLAGLRVCS
PVDGPDLERMVAGSSTCGVILLTKGSMVPYFTENTMVVSTRKIIVGHPID
LPQIRTVGKLERVFDVVSGAPWTFVS*
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mRNA from alignment at chr10:1005140..1006091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03530.1 ID=NO10G03530.1|Name=NO10G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=952bp|location=Sequence derived from alignment at chr10:1005140..1006091- (Nannochloropsis oceanica)
ATGGGAGACCTTCCAGGCCTTGTGAAGGATTCAGGTGAGAAAACATAAGG
GAGGACGGCAGGAAATGGAGGGTGCACACCCTGTGCGCAGAACTGACCCC
CTGAGTTGACCTCTTGGAGCTCTAGTGGTGGTAGTGCTGGTGGTGCTGCC
CGCACTATCTGAATGTGTACAATGTCGAGCCCCCTCATTGAATGTATCTT
CTTATGCCTTCGACGAACGTATCTTGTGTCCCTGCCATTCTCTTCTTGGC
CGCTTTAATCGCATCAAGGGCAGCTCCGACACCTCCGGTGCACCGATTCT
TTGCCGGCTTTGCTTCCCTAACTCGCTCCTTTTGCCCTCTCCTTTTCCCC
CTCTTGCACCGCTCTGATGATCAGCAGCATTACCCCTTACCATAACGATT
CAATCGTTTCTCTGACACATCTCCGTTTCCCACCTCCCTCTCTCCTGCGC
TACAGTGCTGTCAACCAACGCGGGCACCACCGGTGCCGCTCCGAAATCCG
TAGGTACGACGGTGACGCCCGCTGTCCCCACAGCATCGAAGGCAGCGCCT
GCTGAGGGTACTGGCGACCTCACGTTTCAGAACTTCCTCGAAACCGGCAC
GGTGGGAGGCGTTGGCCTCGGCGCGGCACTGGGTGCTTTGCCCGGGGCCT
CGACCGTGAATGGAGCCTTCAACGGCTTGGCGAGTAATTTGGCCAACCTG
GCAGGCCTTCGTGTCTGCTCTCCCGTGGATGGTCCTGATCTGGAGCGAAT
GGTGGCGGGCTCGAGCACTTGCGGCGTCATTCTCCTGACGAAGGGCTCTA
TGGTCCCATACTTCACGGAGAACACGATGGTTGTGTCAACCCGCAAGATT
ATCGTGGGCCACCCTATTGACCTTCCTCAAATTAGGACGGTAGGGAAACT
AGAGCGGGTCTTTGACGTGGTGTCGGGGGCTCCTTGGACATTCGTTTCGT
GA
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Coding sequence (CDS) from alignment at chr10:1005140..1006091-

>NO10G03530.1 ID=NO10G03530.1|Name=NO10G03530.1|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at chr10:1005140..1006091- (Nannochloropsis oceanica)
ATGGGAGACCTTCCAGGCCTTGTGAAGGATTCAGTGCTGTCAACCAACGC
GGGCACCACCGGTGCCGCTCCGAAATCCGTAGGTACGACGGTGACGCCCG
CTGTCCCCACAGCATCGAAGGCAGCGCCTGCTGAGGGTACTGGCGACCTC
ACGTTTCAGAACTTCCTCGAAACCGGCACGGTGGGAGGCGTTGGCCTCGG
CGCGGCACTGGGTGCTTTGCCCGGGGCCTCGACCGTGAATGGAGCCTTCA
ACGGCTTGGCGAGTAATTTGGCCAACCTGGCAGGCCTTCGTGTCTGCTCT
CCCGTGGATGGTCCTGATCTGGAGCGAATGGTGGCGGGCTCGAGCACTTG
CGGCGTCATTCTCCTGACGAAGGGCTCTATGGTCCCATACTTCACGGAGA
ACACGATGGTTGTGTCAACCCGCAAGATTATCGTGGGCCACCCTATTGAC
CTTCCTCAAATTAGGACGGTAGGGAAACTAGAGCGGGTCTTTGACGTGGT
GTCGGGGGCTCCTTGGACATTCGTTTCGTGA
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Synonyms
Publications