NO10G02760, NO10G02760 (gene) Nannochloropsis oceanica

Overview
NameNO10G02760
Unique NameNO10G02760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2027
Alignment locationchr10:759028..761054 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger FYVE-type
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:759028..761054 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005515protein binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR036770Ankyrin_rpt-contain_sf
IPR017455Znf_FYVE-rel
IPR001388Synaptobrevin
IPR020683Ankyrin_rpt-contain_dom
IPR000306Znf_FYVE
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of NO10G02760 vs. NCBI_GenBank
Match: EWM25492.1 (zinc finger FYVE-type, partial [Nannochloropsis gaditana])

HSP 1 Score: 117.9 bits (294), Expect = 1.200e-22
Identity = 81/246 (32.93%), Postives = 104/246 (42.28%), Query Frame = 0 
Query:  403 ACALCGEGFTALTRRQHHCRLCALAVCGNCSGKKLPLGQYLIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVRVCDGCFNWGLHQLLAMQAGAIVGATVGAGSGSHGIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGFFRKDGSYSSSAPVAARRATESIGNAMGELKAGLQDRGERLESLADKTTELAECSAQFADMAKQLNEQYGSGRGWW 649
            AC LC E F  L RRQH CRLCAL VCG+CS K+LPLG YL GG                                          TMVRVCDGCFNWG++++L ++  ++ G  V     +  ++                                          + + RK+   ++ A  A+RRAT+ +  AMGEL+ GLQDRGERLESL                    LNE+YG G GWW
Sbjct:  196 ACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGG-------------------------------GREGGKGGGVETMVRVCDGCFNWGVYEMLKLRV-SVGGERVHDRKEAKFVE----------------AGARERAEERELFGQSREKSGGRGGLMNWLRKE---ANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLXXXXXXXXXXXXXXXXXXXXLNERYGGGGGWW 390
The following BLAST results are available for this feature:
BLAST of NO10G02760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25492.11.200e-2232.93zinc finger FYVE-type, partial [Nannochloropsis ga... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02760.1NO10G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585872gene_3931Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g49gene5013Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02760.1NO10G02760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02760 ID=NO10G02760|Name=NO10G02760|organism=Nannochloropsis oceanica|type=gene|length=2027bp
ATGCTCACCCTCCTTCTCCAGTACCATGCCGATACCACTCTCGCCGACGC
CCAGGGCCGTCTCCCCCTCCACCTTGCTGCTCTCTCCCTCGATGATACAG
CAATCTCTCTCCTCCTTTCCTCTTCTTCCTCCTCTTCCCTCCCTCCCTCT
TCCTCCTCGTCCTCCCTCCTTGTCAGATGCTTCGTCAATGCCCAGGATAT
GGACGGGCGAACTCCTGCTTTCCTCGCTTCCGTTTCACCCCGCCTTCTCC
CACGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGGGTAGTGAACAAC
TCCCTCCTCCCTGTCCTCCGTCGGTGTCTCCTCGCTCTCCAAACCTATGA
TGCCGATTTGGATTCAATCGATAAAGACGGAAGGACTGCCTTGATGGTAG
CCAGCGAGGGATGGTGGGAGGGCGTGGTCCAGGTCTTGGGTGAACTCGGA
GCAGATGTTAATGCGTTTAGTAGAGGAAGGCATGGAAGGAGCGAGAAAGG
GAAAGAGGAGGAAGAGGAGTTGGCTGTGGAGAGGGGTTTGACAGCATTGC
ATTGGGCATGTTGTGGTGGTGGGTCGAGGTGGGAGAATGCAGAAAGAGAG
GGAGAAGGGGATGGAGCGGCTTTGGCCTTGGGAGGAACGTTGCAAGCATT
ATTAATGTTGGGGGCGCAGCCGAATTTGAAGAGTAGCTGTGGCAAAGACA
GCAGCAGTAGTTTTGGTGGCATGGAGGAGAAGAAAAAAGGAAGGAATCAA
ACGAAAGGAGGAGGGGGGGGGGCGGGAGGGAGGACACCGACGCAAACGTT
GCTTGACCGCGGCGCTGCATCAGTCGCAGCAGTAGAGCGAGAAGCAGAAG
GGGGGGATATTGGAAGGGAACGTGGAGAAGTAACCGCCGCCATTCTCATT
AAAGGCGTGGCAACATTGGTCGCTTTTGGAGCGCGGATTAATCTTCGCAG
CAGCAGCAGCAGCGGTGGTGGTGGTAATACCAGCAGCAGCCGCACCAGCA
GTAGTATCATCAACTTCCTCCTCCCTCCTTCTCTTTCCCACCCCCCTCCT
TTTCCTCCTCCCAGCAGCGACAACAACAGCAGCAGCATCTCGGTGCCTCC
AAAACAATCTGGTCACTCAAAAAGTCTCCCCAAGCAAAGGAGgtatcaaa
cgaggtcctcaggcatatagcccacaagtcatggacgcgccctcggctgc
gctcaccctctgaatcgatcagCAACAGCAGCAGCAGTAGTAATGGCGGC
AGCGGCAGTGGTAACGAGGAGAAGGGGGAAGGAGGGGCGTGTGCATTGTG
TGGGGAGGGATTTACGGCCCTGACACGGCGACAGCACCATTGTCGATTGT
GTGCCTTGGCGGTGTGTGGGAATTGTTCGGGGAAAAAGCTGCCGCTGGGT
CAGTATTTAATTGGTGGTGGTAAAGGAGGAGAAGGAGAAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAG
GAGGAGGAGGATTAGTGAGGGTTGGAGGAGGAGGAGGTAGCGAGACGATG
GTCCGTGTGTGTGATGGGTGTTTTAATTGGGGGTTGCATCAGTTGTTGGC
GATGCAGGCTGGTGCTATTGTTGGTGCGACTGTTGGTGCTGGTAGTGGTA
GTCATGGTATACAGCAGCAGCAGCAAGAGATTCAGAATGCGAAAAGGGAG
GATGCAGACCAACAGGAGCTCTACAGCAGCAGCAACAGCAACAGTTGTAA
TAACAAGAAGGACGACAAATTGAACAGAAAAGGCGGCTTGCTCGGCTTCT
TCCGGAAGGATGGCTCCTATTCGTCCTCCGCTCCTGTCGCTGCCCGTCGA
GCCACCGAGAGCATCGGCAACGCAATGGGTGAGTTGAAAGCAGGACTGCA
GGATCGAGGAGAGAGACTTGAAAGCTTGGCGGATAAGACAACGGAGCTGG
CGGAGTGCTCGGCCCAGTTTGCAGATATGGCCAAGCAGCTGAATGAGCAG
TATGGGAGTGGAAGGGGGTGGTGGTGA
back to top

protein sequence of NO10G02760.1

>NO10G02760.1-protein ID=NO10G02760.1-protein|Name=NO10G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MLTLLLQYHADTTLADAQGRLPLHLAALSLDDTAISLLLSSSSSSSLPPS
SSSSSLLVRCFVNAQDMDGRTPAFLASVSPRLLPRGGGGGGEGGGGVVNN
SLLPVLRRCLLALQTYDADLDSIDKDGRTALMVASEGWWEGVVQVLGELG
ADVNAFSRGRHGRSEKGKEEEEELAVERGLTALHWACCGGGSRWENAERE
GEGDGAALALGGTLQALLMLGAQPNLKSSCGKDSSSSFGGMEEKKKGRNQ
TKGGGGGAGGRTPTQTLLDRGAASVAAVEREAEGGDIGRERGEVTAAILI
KGVATLVAFGARINLRSSSSSGGGGNTSSSRTSSSIINFLLPPSLSHPPP
FPPPSSDNNSSSISVPPKQSGHSKSLPKQRSNSSSSSNGGSGSGNEEKGE
GGACALCGEGFTALTRRQHHCRLCALAVCGNCSGKKLPLGQYLIGGGKGG
EGEGGGGGGGGGGGGGGGGGGGEGGGGLVRVGGGGGSETMVRVCDGCFNW
GLHQLLAMQAGAIVGATVGAGSGSHGIQQQQQEIQNAKREDADQQELYSS
SNSNSCNNKKDDKLNRKGGLLGFFRKDGSYSSSAPVAARRATESIGNAMG
ELKAGLQDRGERLESLADKTTELAECSAQFADMAKQLNEQYGSGRGWW*
back to top
Synonyms
Publications