NO10G02760.1, NO10G02760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02760.1
Unique NameNO10G02760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1947
Alignment locationchr10:759028..761054 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:759028..761054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02760.1 vs.
Match: EWM25492.1 (zinc finger FYVE-type, partial [Nannochloropsis gaditana])

HSP 1 Score: 175.3 bits (443), Expect = 6.400e-40
Identity = 160/424 (37.74%), Postives = 215/424 (50.71%), Query Frame = 0 
Query:  248 RNQTKGGGGGAGGRTPTQTLLDRGAASVAAVEREAEGGDIGRERGEVTAAILIKGVATLVAFGARINLRSSSSSGGGGNTSSSRTSSSIINFLLPPSLSHPPPFPPPSSDNNSSSISVPPKQSGHSKSLPKQRSNSSSS---------------SNGGSGSG---NEEKGEGG-----ACALCGEGFTALTRRQHHCRLCALAVCGNCSGKKLPLGQYLIGGGKGGEGEGGGGGGGGGGGGGGGGGGGEGGGGLVRVGGGGGSETMVRVCDGCFNWGLHQLLAMQAGAIVGATVGAGSGSHGIQQQQQEIQNAKREDADQQELYSSSNSNSCNNKKDDKLNRKGGLLGFFRKDGSYSSSAPVAARRATESIGNAMGELKAGLQDRGERLESLADKTTELAECSAQFADMAKQLNEQYGSGRGWW 649
            R + +GG  G  G  P     D G +S           D+        + +  + +A LV+FGAR++L  S       NT SS + SS+ +FLLP   S  P       ++    +    K    +K  P  +  S+ +               S G +G G    E +G GG     AC LC E F  L RRQH CRLCAL VCG+CS K+LPLG YL                        GGGG EG       G GGG ETMVRVCDGCFNWG++++L ++        V  G      +++ + ++   RE A+++EL+  S          +K   +GGL+ + RK+   ++ A  A+RRAT+ +  AMGEL+ GLQDRGERLESLADKTTELA+ SAQFA+MAKQLNE+YG G GWW
Sbjct:   40 RGEQRGGEEGNRGDGPAS---DSGDSSPP---------DLSDASPSAASVLSTRALALLVSFGARVDLSRSDK-----NTRSS-SKSSLTDFLLP---SQAPRGEQQRREDRQQRLQ-SAKAVWSAKKAPSAKDLSAEAMQRIAQKAWHRCHAGSLGLAGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYL------------------------GGGGREG-------GKGGGVETMVRVCDGCFNWGVYEMLKLR--------VSVGGERVHDRKEAKFVEAGARERAEERELFGQSR---------EKSGGRGGLMNWLRKE---ANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGWW 390
The following BLAST results are available for this feature:
BLAST of NO10G02760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25492.16.400e-4037.74zinc finger FYVE-type, partial [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02760NO10G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02760.1NO10G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02760.1.cds1NO10G02760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02760.1.cds2NO10G02760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02760.1 ID=NO10G02760.1|Name=NO10G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1947bp
ATGCTCACCCTCCTTCTCCAGTACCATGCCGATACCACTCTCGCCGACGC
CCAGGGCCGTCTCCCCCTCCACCTTGCTGCTCTCTCCCTCGATGATACAG
CAATCTCTCTCCTCCTTTCCTCTTCTTCCTCCTCTTCCCTCCCTCCCTCT
TCCTCCTCGTCCTCCCTCCTTGTCAGATGCTTCGTCAATGCCCAGGATAT
GGACGGGCGAACTCCTGCTTTCCTCGCTTCCGTTTCACCCCGCCTTCTCC
CACGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGGGTAGTGAACAAC
TCCCTCCTCCCTGTCCTCCGTCGGTGTCTCCTCGCTCTCCAAACCTATGA
TGCCGATTTGGATTCAATCGATAAAGACGGAAGGACTGCCTTGATGGTAG
CCAGCGAGGGATGGTGGGAGGGCGTGGTCCAGGTCTTGGGTGAACTCGGA
GCAGATGTTAATGCGTTTAGTAGAGGAAGGCATGGAAGGAGCGAGAAAGG
GAAAGAGGAGGAAGAGGAGTTGGCTGTGGAGAGGGGTTTGACAGCATTGC
ATTGGGCATGTTGTGGTGGTGGGTCGAGGTGGGAGAATGCAGAAAGAGAG
GGAGAAGGGGATGGAGCGGCTTTGGCCTTGGGAGGAACGTTGCAAGCATT
ATTAATGTTGGGGGCGCAGCCGAATTTGAAGAGTAGCTGTGGCAAAGACA
GCAGCAGTAGTTTTGGTGGCATGGAGGAGAAGAAAAAAGGAAGGAATCAA
ACGAAAGGAGGAGGGGGGGGGGCGGGAGGGAGGACACCGACGCAAACGTT
GCTTGACCGCGGCGCTGCATCAGTCGCAGCAGTAGAGCGAGAAGCAGAAG
GGGGGGATATTGGAAGGGAACGTGGAGAAGTAACCGCCGCCATTCTCATT
AAAGGCGTGGCAACATTGGTCGCTTTTGGAGCGCGGATTAATCTTCGCAG
CAGCAGCAGCAGCGGTGGTGGTGGTAATACCAGCAGCAGCCGCACCAGCA
GTAGTATCATCAACTTCCTCCTCCCTCCTTCTCTTTCCCACCCCCCTCCT
TTTCCTCCTCCCAGCAGCGACAACAACAGCAGCAGCATCTCGGTGCCTCC
AAAACAATCTGGTCACTCAAAAAGTCTCCCCAAGCAAAGGAGCAACAGCA
GCAGCAGTAGTAATGGCGGCAGCGGCAGTGGTAACGAGGAGAAGGGGGAA
GGAGGGGCGTGTGCATTGTGTGGGGAGGGATTTACGGCCCTGACACGGCG
ACAGCACCATTGTCGATTGTGTGCCTTGGCGGTGTGTGGGAATTGTTCGG
GGAAAAAGCTGCCGCTGGGTCAGTATTTAATTGGTGGTGGTAAAGGAGGA
GAAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGAAGGAGGAGGAGGATTAGTGAGGGTTGGAGGAG
GAGGAGGTAGCGAGACGATGGTCCGTGTGTGTGATGGGTGTTTTAATTGG
GGGTTGCATCAGTTGTTGGCGATGCAGGCTGGTGCTATTGTTGGTGCGAC
TGTTGGTGCTGGTAGTGGTAGTCATGGTATACAGCAGCAGCAGCAAGAGA
TTCAGAATGCGAAAAGGGAGGATGCAGACCAACAGGAGCTCTACAGCAGC
AGCAACAGCAACAGTTGTAATAACAAGAAGGACGACAAATTGAACAGAAA
AGGCGGCTTGCTCGGCTTCTTCCGGAAGGATGGCTCCTATTCGTCCTCCG
CTCCTGTCGCTGCCCGTCGAGCCACCGAGAGCATCGGCAACGCAATGGGT
GAGTTGAAAGCAGGACTGCAGGATCGAGGAGAGAGACTTGAAAGCTTGGC
GGATAAGACAACGGAGCTGGCGGAGTGCTCGGCCCAGTTTGCAGATATGG
CCAAGCAGCTGAATGAGCAGTATGGGAGTGGAAGGGGGTGGTGGTGA
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protein sequence of NO10G02760.1

>NO10G02760.1-protein ID=NO10G02760.1-protein|Name=NO10G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MLTLLLQYHADTTLADAQGRLPLHLAALSLDDTAISLLLSSSSSSSLPPS
SSSSSLLVRCFVNAQDMDGRTPAFLASVSPRLLPRGGGGGGEGGGGVVNN
SLLPVLRRCLLALQTYDADLDSIDKDGRTALMVASEGWWEGVVQVLGELG
ADVNAFSRGRHGRSEKGKEEEEELAVERGLTALHWACCGGGSRWENAERE
GEGDGAALALGGTLQALLMLGAQPNLKSSCGKDSSSSFGGMEEKKKGRNQ
TKGGGGGAGGRTPTQTLLDRGAASVAAVEREAEGGDIGRERGEVTAAILI
KGVATLVAFGARINLRSSSSSGGGGNTSSSRTSSSIINFLLPPSLSHPPP
FPPPSSDNNSSSISVPPKQSGHSKSLPKQRSNSSSSSNGGSGSGNEEKGE
GGACALCGEGFTALTRRQHHCRLCALAVCGNCSGKKLPLGQYLIGGGKGG
EGEGGGGGGGGGGGGGGGGGGGEGGGGLVRVGGGGGSETMVRVCDGCFNW
GLHQLLAMQAGAIVGATVGAGSGSHGIQQQQQEIQNAKREDADQQELYSS
SNSNSCNNKKDDKLNRKGGLLGFFRKDGSYSSSAPVAARRATESIGNAMG
ELKAGLQDRGERLESLADKTTELAECSAQFADMAKQLNEQYGSGRGWW*
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mRNA from alignment at chr10:759028..761054+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02760.1 ID=NO10G02760.1|Name=NO10G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2027bp|location=Sequence derived from alignment at chr10:759028..761054+ (Nannochloropsis oceanica)
ATGCTCACCCTCCTTCTCCAGTACCATGCCGATACCACTCTCGCCGACGC
CCAGGGCCGTCTCCCCCTCCACCTTGCTGCTCTCTCCCTCGATGATACAG
CAATCTCTCTCCTCCTTTCCTCTTCTTCCTCCTCTTCCCTCCCTCCCTCT
TCCTCCTCGTCCTCCCTCCTTGTCAGATGCTTCGTCAATGCCCAGGATAT
GGACGGGCGAACTCCTGCTTTCCTCGCTTCCGTTTCACCCCGCCTTCTCC
CACGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGGGTAGTGAACAAC
TCCCTCCTCCCTGTCCTCCGTCGGTGTCTCCTCGCTCTCCAAACCTATGA
TGCCGATTTGGATTCAATCGATAAAGACGGAAGGACTGCCTTGATGGTAG
CCAGCGAGGGATGGTGGGAGGGCGTGGTCCAGGTCTTGGGTGAACTCGGA
GCAGATGTTAATGCGTTTAGTAGAGGAAGGCATGGAAGGAGCGAGAAAGG
GAAAGAGGAGGAAGAGGAGTTGGCTGTGGAGAGGGGTTTGACAGCATTGC
ATTGGGCATGTTGTGGTGGTGGGTCGAGGTGGGAGAATGCAGAAAGAGAG
GGAGAAGGGGATGGAGCGGCTTTGGCCTTGGGAGGAACGTTGCAAGCATT
ATTAATGTTGGGGGCGCAGCCGAATTTGAAGAGTAGCTGTGGCAAAGACA
GCAGCAGTAGTTTTGGTGGCATGGAGGAGAAGAAAAAAGGAAGGAATCAA
ACGAAAGGAGGAGGGGGGGGGGCGGGAGGGAGGACACCGACGCAAACGTT
GCTTGACCGCGGCGCTGCATCAGTCGCAGCAGTAGAGCGAGAAGCAGAAG
GGGGGGATATTGGAAGGGAACGTGGAGAAGTAACCGCCGCCATTCTCATT
AAAGGCGTGGCAACATTGGTCGCTTTTGGAGCGCGGATTAATCTTCGCAG
CAGCAGCAGCAGCGGTGGTGGTGGTAATACCAGCAGCAGCCGCACCAGCA
GTAGTATCATCAACTTCCTCCTCCCTCCTTCTCTTTCCCACCCCCCTCCT
TTTCCTCCTCCCAGCAGCGACAACAACAGCAGCAGCATCTCGGTGCCTCC
AAAACAATCTGGTCACTCAAAAAGTCTCCCCAAGCAAAGGAGGTATCAAA
CGAGGTCCTCAGGCATATAGCCCACAAGTCATGGACGCGCCCTCGGCTGC
GCTCACCCTCTGAATCGATCAGCAACAGCAGCAGCAGTAGTAATGGCGGC
AGCGGCAGTGGTAACGAGGAGAAGGGGGAAGGAGGGGCGTGTGCATTGTG
TGGGGAGGGATTTACGGCCCTGACACGGCGACAGCACCATTGTCGATTGT
GTGCCTTGGCGGTGTGTGGGAATTGTTCGGGGAAAAAGCTGCCGCTGGGT
CAGTATTTAATTGGTGGTGGTAAAGGAGGAGAAGGAGAAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAG
GAGGAGGAGGATTAGTGAGGGTTGGAGGAGGAGGAGGTAGCGAGACGATG
GTCCGTGTGTGTGATGGGTGTTTTAATTGGGGGTTGCATCAGTTGTTGGC
GATGCAGGCTGGTGCTATTGTTGGTGCGACTGTTGGTGCTGGTAGTGGTA
GTCATGGTATACAGCAGCAGCAGCAAGAGATTCAGAATGCGAAAAGGGAG
GATGCAGACCAACAGGAGCTCTACAGCAGCAGCAACAGCAACAGTTGTAA
TAACAAGAAGGACGACAAATTGAACAGAAAAGGCGGCTTGCTCGGCTTCT
TCCGGAAGGATGGCTCCTATTCGTCCTCCGCTCCTGTCGCTGCCCGTCGA
GCCACCGAGAGCATCGGCAACGCAATGGGTGAGTTGAAAGCAGGACTGCA
GGATCGAGGAGAGAGACTTGAAAGCTTGGCGGATAAGACAACGGAGCTGG
CGGAGTGCTCGGCCCAGTTTGCAGATATGGCCAAGCAGCTGAATGAGCAG
TATGGGAGTGGAAGGGGGTGGTGGTGA
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Coding sequence (CDS) from alignment at chr10:759028..761054+

>NO10G02760.1 ID=NO10G02760.1|Name=NO10G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=1947bp|location=Sequence derived from alignment at chr10:759028..761054+ (Nannochloropsis oceanica)
ATGCTCACCCTCCTTCTCCAGTACCATGCCGATACCACTCTCGCCGACGC
CCAGGGCCGTCTCCCCCTCCACCTTGCTGCTCTCTCCCTCGATGATACAG
CAATCTCTCTCCTCCTTTCCTCTTCTTCCTCCTCTTCCCTCCCTCCCTCT
TCCTCCTCGTCCTCCCTCCTTGTCAGATGCTTCGTCAATGCCCAGGATAT
GGACGGGCGAACTCCTGCTTTCCTCGCTTCCGTTTCACCCCGCCTTCTCC
CACGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGGGTAGTGAACAAC
TCCCTCCTCCCTGTCCTCCGTCGGTGTCTCCTCGCTCTCCAAACCTATGA
TGCCGATTTGGATTCAATCGATAAAGACGGAAGGACTGCCTTGATGGTAG
CCAGCGAGGGATGGTGGGAGGGCGTGGTCCAGGTCTTGGGTGAACTCGGA
GCAGATGTTAATGCGTTTAGTAGAGGAAGGCATGGAAGGAGCGAGAAAGG
GAAAGAGGAGGAAGAGGAGTTGGCTGTGGAGAGGGGTTTGACAGCATTGC
ATTGGGCATGTTGTGGTGGTGGGTCGAGGTGGGAGAATGCAGAAAGAGAG
GGAGAAGGGGATGGAGCGGCTTTGGCCTTGGGAGGAACGTTGCAAGCATT
ATTAATGTTGGGGGCGCAGCCGAATTTGAAGAGTAGCTGTGGCAAAGACA
GCAGCAGTAGTTTTGGTGGCATGGAGGAGAAGAAAAAAGGAAGGAATCAA
ACGAAAGGAGGAGGGGGGGGGGCGGGAGGGAGGACACCGACGCAAACGTT
GCTTGACCGCGGCGCTGCATCAGTCGCAGCAGTAGAGCGAGAAGCAGAAG
GGGGGGATATTGGAAGGGAACGTGGAGAAGTAACCGCCGCCATTCTCATT
AAAGGCGTGGCAACATTGGTCGCTTTTGGAGCGCGGATTAATCTTCGCAG
CAGCAGCAGCAGCGGTGGTGGTGGTAATACCAGCAGCAGCCGCACCAGCA
GTAGTATCATCAACTTCCTCCTCCCTCCTTCTCTTTCCCACCCCCCTCCT
TTTCCTCCTCCCAGCAGCGACAACAACAGCAGCAGCATCTCGGTGCCTCC
AAAACAATCTGGTCACTCAAAAAGTCTCCCCAAGCAAAGGAGCAACAGCA
GCAGCAGTAGTAATGGCGGCAGCGGCAGTGGTAACGAGGAGAAGGGGGAA
GGAGGGGCGTGTGCATTGTGTGGGGAGGGATTTACGGCCCTGACACGGCG
ACAGCACCATTGTCGATTGTGTGCCTTGGCGGTGTGTGGGAATTGTTCGG
GGAAAAAGCTGCCGCTGGGTCAGTATTTAATTGGTGGTGGTAAAGGAGGA
GAAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGAAGGAGGAGGAGGATTAGTGAGGGTTGGAGGAG
GAGGAGGTAGCGAGACGATGGTCCGTGTGTGTGATGGGTGTTTTAATTGG
GGGTTGCATCAGTTGTTGGCGATGCAGGCTGGTGCTATTGTTGGTGCGAC
TGTTGGTGCTGGTAGTGGTAGTCATGGTATACAGCAGCAGCAGCAAGAGA
TTCAGAATGCGAAAAGGGAGGATGCAGACCAACAGGAGCTCTACAGCAGC
AGCAACAGCAACAGTTGTAATAACAAGAAGGACGACAAATTGAACAGAAA
AGGCGGCTTGCTCGGCTTCTTCCGGAAGGATGGCTCCTATTCGTCCTCCG
CTCCTGTCGCTGCCCGTCGAGCCACCGAGAGCATCGGCAACGCAATGGGT
GAGTTGAAAGCAGGACTGCAGGATCGAGGAGAGAGACTTGAAAGCTTGGC
GGATAAGACAACGGAGCTGGCGGAGTGCTCGGCCCAGTTTGCAGATATGG
CCAAGCAGCTGAATGAGCAGTATGGGAGTGGAAGGGGGTGGTGGTGA
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Synonyms
Publications