NO10G02300, NO10G02300 (gene) Nannochloropsis oceanica

Overview
NameNO10G02300
Unique NameNO10G02300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length828
Alignment locationchr10:635975..636802 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:635975..636802 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G02300 vs. NCBI_GenBank
Match: EWM25360.1 (hypothetical protein Naga_100005g21 [Nannochloropsis gaditana])

HSP 1 Score: 326.6 bits (836), Expect = 7.300e-86
Identity = 158/234 (67.52%), Postives = 180/234 (76.92%), Query Frame = 0 
Query:   40 LSVICAPQAVSLNTPIYVNLHYSSPFSRPMAIHVDLLNADTNEWQAGDKVKVTGMKGNVTARVLVPQEAKAPFKWHAYIAPQDENWPNMLATTTFSADIGAKVVDPCAPLKNTARVSNKPADFNYVLVKDYPSGFAAGAKAPVKVQYNLMPDQPATYVSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVPAGAAAGEPVYLRAILKPAGKAFSERVAEDRVWATAVYTTRRL 274
            L V+C P++V+LNTP YVNL Y++PFSRPMAIHVDLLNADTNEWQAGD VKVTG  G VT+R++VPQ+AK PFKW AYIAPQDENWPNMLATTTF+AD+GAKV+ PCAPL+NTAR  +KP DF+YVLVKDYPS F AGAK PV+VQYNLMPDQP+ YVSA                             DVPA A   EPVYL A+LKPAGKAFSERVAEDRVWAT+V+  RR+
Sbjct:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSVWQQRRM 271
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BLAST of NO10G02300 vs. NCBI_GenBank
Match: EWM25453.1 (hypothetical protein Naga_100005g20 [Nannochloropsis gaditana])

HSP 1 Score: 326.6 bits (836), Expect = 7.300e-86
Identity = 158/234 (67.52%), Postives = 180/234 (76.92%), Query Frame = 0 
Query:   40 LSVICAPQAVSLNTPIYVNLHYSSPFSRPMAIHVDLLNADTNEWQAGDKVKVTGMKGNVTARVLVPQEAKAPFKWHAYIAPQDENWPNMLATTTFSADIGAKVVDPCAPLKNTARVSNKPADFNYVLVKDYPSGFAAGAKAPVKVQYNLMPDQPATYVSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVPAGAAAGEPVYLRAILKPAGKAFSERVAEDRVWATAVYTTRRL 274
            L V+C P++V+LNTP YVNL Y++PFSRPMAIHVDLLNADTNEWQAGD VKVTG  G VT+R++VPQ+AK PFKW AYIAPQDENWPNMLATTTF+AD+GAKV+ PCAPL+NTAR  +KP DF+YVLVKDYPS F AGAK PV+VQYNLMPDQP+ YVSA                             DVPA A   EPVYL A+LKPAGKAFSERVAEDRVWAT+V+  RR+
Sbjct:   38 LKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSVWQQRRM 271
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BLAST of NO10G02300 vs. NCBI_GenBank
Match: EWM30149.1 (hypothetical protein Naga_100115g7 [Nannochloropsis gaditana])

HSP 1 Score: 100.5 bits (249), Expect = 8.500e-18
Identity = 71/256 (27.73%), Postives = 117/256 (45.70%), Query Frame = 0 
Query:   12 AAACATVSADSTPAAEAAKVLDNIPEASLSVICAPQAVSLNTPIYVNLHYSSPFSRPMAIHVDLLNADTNEWQAGDKVKVTGMKGNVTARVLVPQ-EAKAPFKWHAYIAPQDENWPNMLATTTFSADIGAKVVDPCAPLK----NTARVSNKPADFNYVLVKDYPSGFAAGAKAPVKVQYNLMPDQPATYVSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVPAGAAAGEPVYLRAILKPAGKAFSERVAEDRV 263
            AA       + T A      +  +  A++ V+C P+ V++  P  VN+ Y+S   RP+ +HVD+LNA T  + AG   +     G V+  + +P    + PF W  ++ P+ E +PNMLA T F A +   V + CAP K    +   ++N     ++V ++  P+    G++A V V+YNL+    A  +S                               VP  A   E VY+   L P G ++ +R+AED++
Sbjct:  129 AATRGRTDGEPTTAEGHCCGMKGLGGATIEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAFYAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAETGFVAHLADYVKNDCAPFKSYGFDPPELANNVKTVDFVALQKVPAVLTPGSQAMVDVEYNLVGAAKA-ILSVALMRKGPNTIISSFADLAAPGQNKVSLPLPVPYDAPK-EAVYIVVTLTPDGASWEDRLAEDQL 382
The following BLAST results are available for this feature:
BLAST of NO10G02300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM25360.17.300e-8667.52hypothetical protein Naga_100005g21 [Nannochlorops... [more]
EWM25453.17.300e-8667.52hypothetical protein Naga_100005g20 [Nannochlorops... [more]
EWM30149.18.500e-1827.73hypothetical protein Naga_100115g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001099NSK001099Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02300.1NO10G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100005g20gene5053Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02300.1NO10G02300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02300 ID=NO10G02300|Name=NO10G02300|organism=Nannochloropsis oceanica|type=gene|length=828bp
ATGTTCCGCAAGACCCTCGTGCTCCTGGCCGCGGCCGCCGCCTGTGCCAC
CGTCTCCGCCGACTCCACCCCCGCCGCTGAGGCAGCGAAAGTCTTAGACA
ACATCCCTGAGGCGTCCCTGTCGGTGATTTGTGCGCCCCAAGCCGTGTCG
CTGAATACTCCCATTTACGTGAACCTGCATTACTCGTCGCCTTTCTCGCG
GCCTATGGCGATCCACGTGGACCTGCTCAACGCGGACACGAACGAATGGC
AGGCGGGCGACAAGGTCAAGGTGACAGGTATGAAGGGGAACGTCACCGCC
CGTGTGCTTGTGCCGCAAGAAGCCAAAGCACCCTTCAAGTGGCACGCATA
CATCGCTCCCCAGGACGAGAACTGGCCCAACATGCTTGCGACTACCACCT
TTTCTGCGGACATTGGCGCTAAGGTCGTGGACCCTTGTGCGCCGCTGAAG
AACACGGCGCGGGTGTCTAACAAGCCGGCTGATTTCAACTACGTGCTGGT
CAAGGACTACCCGTCGGGCTTCGCAGCGGGCGCCAAGGCCCCTGTCAAGG
TGCAGTACAATCTGATGCCCGATCAGCCCGCCACTTACGTCTCGGCCGTG
CTCTTGCGCTCCAGCGACGACGAGGTGGTGGCATCCGCCGCGGCTCAGGC
AGAGGAAGGCGAGCACACCACGACCATGATGCTGGACGTGCCTGCGGGCG
CTGCAGCCGGCGAGCCTGTGTACCTGAGGGCCATCCTCAAACCGGCTGGC
AAGGCCTTCAGTGAGCGCGTCGCCGAGGACCGGGTCTGGGCCACGGCTGT
CTACACCACCCGCAGGCTCCGCGCGTAG
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protein sequence of NO10G02300.1

>NO10G02300.1-protein ID=NO10G02300.1-protein|Name=NO10G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MFRKTLVLLAAAAACATVSADSTPAAEAAKVLDNIPEASLSVICAPQAVS
LNTPIYVNLHYSSPFSRPMAIHVDLLNADTNEWQAGDKVKVTGMKGNVTA
RVLVPQEAKAPFKWHAYIAPQDENWPNMLATTTFSADIGAKVVDPCAPLK
NTARVSNKPADFNYVLVKDYPSGFAAGAKAPVKVQYNLMPDQPATYVSAV
LLRSSDDEVVASAAAQAEEGEHTTTMMLDVPAGAAAGEPVYLRAILKPAG
KAFSERVAEDRVWATAVYTTRRLRA*
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Synonyms
Publications