NO10G02300.1, NO10G02300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02300.1
Unique NameNO10G02300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length828
Alignment locationchr10:635975..636802 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:635975..636802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02300.1 vs.
Match: EWM25360.1 (hypothetical protein Naga_100005g21 [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 1.200e-99
Identity = 189/274 (68.98%), Postives = 222/274 (81.02%), Query Frame = 0 
Query:    1 MFRK-TLVLLAAAAACATVSADSTPAAEAAKVLDNIPEASLSVICAPQAVSLNTPIYVNLHYSSPFSRPMAIHVDLLNADTNEWQAGDKVKVTGMKGNVTARVLVPQEAKAPFKWHAYIAPQDENWPNMLATTTFSADIGAKVVDPCAPLKNTARVSNKPADFNYVLVKDYPSGFAAGAKAPVKVQYNLMPDQPATYVSAVLLRSSDDEVVASAAAQAEEGEHTTTMMLDVPAGAAAGEPVYLRAILKPAGKAFSERVAEDRVWATAVYTTRRL 274
            MFRK TL +  AAA+ A   AD++ + E        P+  L V+C P++V+LNTP YVNL Y++PFSRPMAIHVDLLNADTNEWQAGD VKVTG  G VT+R++VPQ+AK PFKW AYIAPQDENWPNMLATTTF+AD+GAKV+ PCAPL+NTAR  +KP DF+YVLVKDYPS F AGAK PV+VQYNLMPDQP+ YVSA LLR+SD+ VVASA  +A+EGEH  TM +DVPA A   EPVYL A+LKPAGKAFSERVAEDRVWAT+V+  RR+
Sbjct:    1 MFRKMTLFMAVAAASLAFAGADASVSTEPET---RTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRIVVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATLLRASDNTVVASAQEKAKEGEHDLTMFMDVPADALMSEPVYLMAVLKPAGKAFSERVAEDRVWATSVWQQRRM 271
The following BLAST results are available for this feature:
BLAST of NO10G02300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25360.11.200e-9968.98hypothetical protein Naga_100005g21 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02300NO10G02300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02300.1NO10G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02300.1.cds1NO10G02300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02300.1 ID=NO10G02300.1|Name=NO10G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
ATGTTCCGCAAGACCCTCGTGCTCCTGGCCGCGGCCGCCGCCTGTGCCAC
CGTCTCCGCCGACTCCACCCCCGCCGCTGAGGCAGCGAAAGTCTTAGACA
ACATCCCTGAGGCGTCCCTGTCGGTGATTTGTGCGCCCCAAGCCGTGTCG
CTGAATACTCCCATTTACGTGAACCTGCATTACTCGTCGCCTTTCTCGCG
GCCTATGGCGATCCACGTGGACCTGCTCAACGCGGACACGAACGAATGGC
AGGCGGGCGACAAGGTCAAGGTGACAGGTATGAAGGGGAACGTCACCGCC
CGTGTGCTTGTGCCGCAAGAAGCCAAAGCACCCTTCAAGTGGCACGCATA
CATCGCTCCCCAGGACGAGAACTGGCCCAACATGCTTGCGACTACCACCT
TTTCTGCGGACATTGGCGCTAAGGTCGTGGACCCTTGTGCGCCGCTGAAG
AACACGGCGCGGGTGTCTAACAAGCCGGCTGATTTCAACTACGTGCTGGT
CAAGGACTACCCGTCGGGCTTCGCAGCGGGCGCCAAGGCCCCTGTCAAGG
TGCAGTACAATCTGATGCCCGATCAGCCCGCCACTTACGTCTCGGCCGTG
CTCTTGCGCTCCAGCGACGACGAGGTGGTGGCATCCGCCGCGGCTCAGGC
AGAGGAAGGCGAGCACACCACGACCATGATGCTGGACGTGCCTGCGGGCG
CTGCAGCCGGCGAGCCTGTGTACCTGAGGGCCATCCTCAAACCGGCTGGC
AAGGCCTTCAGTGAGCGCGTCGCCGAGGACCGGGTCTGGGCCACGGCTGT
CTACACCACCCGCAGGCTCCGCGCGTAG
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protein sequence of NO10G02300.1

>NO10G02300.1-protein ID=NO10G02300.1-protein|Name=NO10G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MFRKTLVLLAAAAACATVSADSTPAAEAAKVLDNIPEASLSVICAPQAVS
LNTPIYVNLHYSSPFSRPMAIHVDLLNADTNEWQAGDKVKVTGMKGNVTA
RVLVPQEAKAPFKWHAYIAPQDENWPNMLATTTFSADIGAKVVDPCAPLK
NTARVSNKPADFNYVLVKDYPSGFAAGAKAPVKVQYNLMPDQPATYVSAV
LLRSSDDEVVASAAAQAEEGEHTTTMMLDVPAGAAAGEPVYLRAILKPAG
KAFSERVAEDRVWATAVYTTRRLRA*
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mRNA from alignment at chr10:635975..636802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02300.1 ID=NO10G02300.1|Name=NO10G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=828bp|location=Sequence derived from alignment at chr10:635975..636802- (Nannochloropsis oceanica)
ATGTTCCGCAAGACCCTCGTGCTCCTGGCCGCGGCCGCCGCCTGTGCCAC
CGTCTCCGCCGACTCCACCCCCGCCGCTGAGGCAGCGAAAGTCTTAGACA
ACATCCCTGAGGCGTCCCTGTCGGTGATTTGTGCGCCCCAAGCCGTGTCG
CTGAATACTCCCATTTACGTGAACCTGCATTACTCGTCGCCTTTCTCGCG
GCCTATGGCGATCCACGTGGACCTGCTCAACGCGGACACGAACGAATGGC
AGGCGGGCGACAAGGTCAAGGTGACAGGTATGAAGGGGAACGTCACCGCC
CGTGTGCTTGTGCCGCAAGAAGCCAAAGCACCCTTCAAGTGGCACGCATA
CATCGCTCCCCAGGACGAGAACTGGCCCAACATGCTTGCGACTACCACCT
TTTCTGCGGACATTGGCGCTAAGGTCGTGGACCCTTGTGCGCCGCTGAAG
AACACGGCGCGGGTGTCTAACAAGCCGGCTGATTTCAACTACGTGCTGGT
CAAGGACTACCCGTCGGGCTTCGCAGCGGGCGCCAAGGCCCCTGTCAAGG
TGCAGTACAATCTGATGCCCGATCAGCCCGCCACTTACGTCTCGGCCGTG
CTCTTGCGCTCCAGCGACGACGAGGTGGTGGCATCCGCCGCGGCTCAGGC
AGAGGAAGGCGAGCACACCACGACCATGATGCTGGACGTGCCTGCGGGCG
CTGCAGCCGGCGAGCCTGTGTACCTGAGGGCCATCCTCAAACCGGCTGGC
AAGGCCTTCAGTGAGCGCGTCGCCGAGGACCGGGTCTGGGCCACGGCTGT
CTACACCACCCGCAGGCTCCGCGCGTAG
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Coding sequence (CDS) from alignment at chr10:635975..636802-

>NO10G02300.1 ID=NO10G02300.1|Name=NO10G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr10:635975..636802- (Nannochloropsis oceanica)
ATGTTCCGCAAGACCCTCGTGCTCCTGGCCGCGGCCGCCGCCTGTGCCAC
CGTCTCCGCCGACTCCACCCCCGCCGCTGAGGCAGCGAAAGTCTTAGACA
ACATCCCTGAGGCGTCCCTGTCGGTGATTTGTGCGCCCCAAGCCGTGTCG
CTGAATACTCCCATTTACGTGAACCTGCATTACTCGTCGCCTTTCTCGCG
GCCTATGGCGATCCACGTGGACCTGCTCAACGCGGACACGAACGAATGGC
AGGCGGGCGACAAGGTCAAGGTGACAGGTATGAAGGGGAACGTCACCGCC
CGTGTGCTTGTGCCGCAAGAAGCCAAAGCACCCTTCAAGTGGCACGCATA
CATCGCTCCCCAGGACGAGAACTGGCCCAACATGCTTGCGACTACCACCT
TTTCTGCGGACATTGGCGCTAAGGTCGTGGACCCTTGTGCGCCGCTGAAG
AACACGGCGCGGGTGTCTAACAAGCCGGCTGATTTCAACTACGTGCTGGT
CAAGGACTACCCGTCGGGCTTCGCAGCGGGCGCCAAGGCCCCTGTCAAGG
TGCAGTACAATCTGATGCCCGATCAGCCCGCCACTTACGTCTCGGCCGTG
CTCTTGCGCTCCAGCGACGACGAGGTGGTGGCATCCGCCGCGGCTCAGGC
AGAGGAAGGCGAGCACACCACGACCATGATGCTGGACGTGCCTGCGGGCG
CTGCAGCCGGCGAGCCTGTGTACCTGAGGGCCATCCTCAAACCGGCTGGC
AAGGCCTTCAGTGAGCGCGTCGCCGAGGACCGGGTCTGGGCCACGGCTGT
CTACACCACCCGCAGGCTCCGCGCGTAG
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Synonyms
Publications