NO10G00550, NO10G00550 (gene) Nannochloropsis oceanica

Overview
NameNO10G00550
Unique NameNO10G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length462
Alignment locationchr10:186957..187418 +

Link to JBrowse

Properties
Property NameValue
DescriptionMFS general substrate transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:186957..187418 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO10G00550 vs. NCBI_GenBank
Match: OWZ07541.1 (Major Facilitator Superfamily (MFS) transporter [Phytophthora megakarya])

HSP 1 Score: 72.4 bits (176), Expect = 1.400e-9
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 0 
Query:    1 MQNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDE--KDHL 86
            +Q+P MEALFADS  PG+RS  F  KY +      +GP  ++ +FW  G+EW L   + V+  G VL ++ + + F+FDD+  KD+L
Sbjct:  119 IQSPAMEALFADSIPPGKRSFPFMIKYNISNVAQMLGPALNIFLFWFYGDEWQLPELKLVLEFGCVLGVIGSFILFQFDDDHAKDYL 205
[Close]
BLAST of NO10G00550 vs. NCBI_GenBank
Match: XP_005644248.1 (MFS general substrate transporter [Coccomyxa subellipsoidea C-169] >EIE19704.1 MFS general substrate transporter [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 71.2 bits (173), Expect = 3.100e-9
Identity = 43/126 (34.13%), Postives = 72/126 (57.14%), Query Frame = 0 
Query:    3 NPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDEKDHLTLSPATRAAVRRVASKRRQEIEGGKSRQVLVGEEQSRSRAVLV 129
            NP +E++FADS   G +SK++TWK+ +     A GP+ SV++F+ILGN+W +  C+ V++ G+  +L+P  +   F+D++   TL  A   AV  +    +  ++   S + L G     S A LV
Sbjct:   12 NPAVESIFADSVQTG-KSKLYTWKHVITSLSSAFGPIVSVVLFYILGNQWEVGDCRIVLLIGLNSMLIPLCVMCFFNDDR---TLG-AMSEAVSPLIDAEQSPVKTVPSNEDLSGHRSCCSSAFLV 132
[Close]
BLAST of NO10G00550 vs. NCBI_GenBank
Match: XP_005825838.1 (hypothetical protein GUITHDRAFT_89258 [Guillardia theta CCMP2712] >EKX38858.1 hypothetical protein GUITHDRAFT_89258 [Guillardia theta CCMP2712])

HSP 1 Score: 70.9 bits (172), Expect = 4.000e-9
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 0 
Query:    1 MQNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDEK 83
            + NP +EALFADS + G+RS ++TWK   V    A GP  +V +F  +GN W +   + ++ AGM++ L+P  L   F D K
Sbjct:  123 ISNPALEALFADSVESGRRSSLYTWKATFVSLANATGPTLNVALFLSIGNSWTIAIIRPILSAGMMVALVPIFLLCFFSDRK 204
[Close]
BLAST of NO10G00550 vs. NCBI_GenBank
Match: ETL83945.1 (hypothetical protein L917_16186 [Phytophthora parasitica] >ETP34980.1 hypothetical protein F442_16774 [Phytophthora parasitica P10297])

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-8
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0 
Query:    2 QNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDE--KDHL 86
            Q+P MEALFADS  PG+RS  F  KY +      +GP+ S+ +F   G++W L   + V+  G VL ++ + + F+FDD+  KD+L
Sbjct:  120 QSPAMEALFADSIPPGKRSFPFMIKYNISNLAQMLGPVLSIFLFLFYGDQWQLPELKPVLEFGCVLAIIGSIILFQFDDDRAKDYL 205
[Close]
BLAST of NO10G00550 vs. NCBI_GenBank
Match: ETM37141.1 (hypothetical protein L914_16293 [Phytophthora parasitica])

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-8
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0 
Query:    2 QNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDE--KDHL 86
            Q+P MEALFADS  PG+RS  F  KY +      +GP+ S+ +F   G++W L   + V+  G VL ++ + + F+FDD+  KD+L
Sbjct:  120 QSPAMEALFADSIPPGKRSFPFMIKYNISNLAQMLGPVLSIFLFLFYGDQWQLPELKPVLEFGCVLAIIGSIILFQFDDDRAKDYL 205
[Close]
BLAST of NO10G00550 vs. NCBI_GenBank
Match: ETO65790.1 (hypothetical protein F444_16956 [Phytophthora parasitica P1976])

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-8
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0 
Query:    2 QNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDE--KDHL 86
            Q+P MEALFADS  PG+RS  F  KY +      +GP+ S+ +F   G++W L   + V+  G VL ++ + + F+FDD+  KD+L
Sbjct:  120 QSPAMEALFADSIPPGKRSFPFMIKYNISNLAQMLGPVLSIFLFLFYGDQWQLPELKPVLEFGCVLAIIGSIILFQFDDDRAKDYL 205
[Close]
BLAST of NO10G00550 vs. NCBI_GenBank
Match: XP_008912215.1 (hypothetical protein PPTG_16434 [Phytophthora parasitica INRA-310] >ETI37058.1 hypothetical protein F443_16933 [Phytophthora parasitica P1569] >ETN02481.1 hypothetical protein PPTG_16434 [Phytophthora parasitica INRA-310])

HSP 1 Score: 68.2 bits (165), Expect = 2.600e-8
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0 
Query:    2 QNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDE--KDHL 86
            Q+P MEALFADS  PG+RS  F  KY +      +GP+ S+ +F   G++W L   + V+  G VL ++ + + F+FDD+  KD+L
Sbjct:  120 QSPAMEALFADSIPPGKRSFPFMIKYNISNLAQMLGPVLSIFLFLFYGDQWQLPELKPVLEFGCVLAVIGSIILFQFDDDRAKDYL 205
[Close]
BLAST of NO10G00550 vs. NCBI_GenBank
Match: ETK77269.1 (hypothetical protein L915_16462 [Phytophthora parasitica] >ETL30707.1 hypothetical protein L916_16361 [Phytophthora parasitica] >ETP06888.1 hypothetical protein F441_16777 [Phytophthora parasitica CJ01A1] >KUF77902.1 Major Facilitator Superfamily (MFS) [Phytophthora nicotianae])

HSP 1 Score: 68.2 bits (165), Expect = 2.600e-8
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0 
Query:    2 QNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDE--KDHL 86
            Q+P MEALFADS  PG+RS  F  KY +      +GP+ S+ +F   G++W L   + V+  G VL ++ + + F+FDD+  KD+L
Sbjct:  120 QSPAMEALFADSIPPGKRSFPFMIKYNISNLAQMLGPVLSIFLFLFYGDQWQLPELKPVLEFGCVLAVIGSIILFQFDDDRAKDYL 205
[Close]
BLAST of NO10G00550 vs. NCBI_GenBank
Match: XP_008613045.1 (hypothetical protein SDRG_08920 [Saprolegnia diclina VS20] >EQC33405.1 hypothetical protein SDRG_08920 [Saprolegnia diclina VS20])

HSP 1 Score: 67.8 bits (164), Expect = 3.400e-8
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 0 
Query:    1 MQNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDE--KDHLTLSPATRAAV 96
            +Q P +EALFADS   G+R+   T KY L+      GP   ++ F I G+ W LE  Q+V++ G V+ + P  L F F+D+   ++ T++P    A+
Sbjct:  123 LQRPALEALFADSIPNGERAYPITIKYTLMNTAMVAGPAICIIFFQIYGDTWSLEGLQFVLLVGTVIGVPPLLLLFFFNDDLAYENYTMAPIKTRAI 219
[Close]
BLAST of NO10G00550 vs. NCBI_GenBank
Match: XP_009528145.1 (cystatin-like cysteine protease inhibitor domain-containing protein [Phytophthora sojae] >EGZ14396.1 cystatin-like cysteine protease inhibitor domain-containing protein [Phytophthora sojae])

HSP 1 Score: 67.4 bits (163), Expect = 4.400e-8
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0 
Query:    2 QNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGNEWILEACQYVIVAGMVLVLLPTTLCFRFDDEK 83
            Q+P MEALFADS  PG+RS  F  KY +      +GP+ S+ +F   G+EW L   + V+  G VL ++ + + F+FDD++
Sbjct:  120 QSPAMEALFADSIPPGKRSFPFMIKYNISNLAQMLGPVLSIFLFLFYGDEWQLPELKPVLEFGCVLAVVGSLVLFQFDDDR 200
The following BLAST results are available for this feature:
BLAST of NO10G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OWZ07541.11.400e-941.38Major Facilitator Superfamily (MFS) transporter [P... [more]
XP_005644248.13.100e-934.13MFS general substrate transporter [Coccomyxa subel... [more]
XP_005825838.14.000e-940.24hypothetical protein GUITHDRAFT_89258 [Guillardia ... [more]
ETL83945.12.000e-840.70hypothetical protein L917_16186 [Phytophthora para... [more]
ETM37141.12.000e-840.70hypothetical protein L914_16293 [Phytophthora para... [more]
ETO65790.12.000e-840.70hypothetical protein F444_16956 [Phytophthora para... [more]
XP_008912215.12.600e-840.70hypothetical protein PPTG_16434 [Phytophthora para... [more]
ETK77269.12.600e-840.70hypothetical protein L915_16462 [Phytophthora para... [more]
XP_008613045.13.400e-836.08hypothetical protein SDRG_08920 [Saprolegnia dicli... [more]
XP_009528145.14.400e-840.74cystatin-like cysteine protease inhibitor domain-c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00550.1NO10G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638692gene_4164Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00550.1NO10G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00550 ID=NO10G00550|Name=NO10G00550|organism=Nannochloropsis oceanica|type=gene|length=462bp
ATGCAGAATCCGCCGATGGAGGCGTTGTTTGCTGATTCGAATGACCCAGG
ACAGAGGTCCAAGATATTCACGTGGAAGTATGGCTTGGTGCAAGCGGGGT
GTGCTATCGGCCCATTGTGTAGTGTGATGATGTTTTGGATCTTGGGAAAT
GAATGGATCTTGGAGGCTTGTCAGTATGTGATCGTGGCGGGGATGGTATT
GGTGCTCTTACCGACGACATTGTGTTTTCGGTTTGATGACGAAAAGGACC
ATTTGACCTTGTCCCCTGCGACTCGGGCAGCAGTGCGACGGGTGGCTTCA
AAGAGACGACAAGAGATTGAAGGGGGGAAGAGTAGACAGGTTTTGGTAGG
AGAAGAGCAGAGTCGGAGTCGTGCGGTCCTGGTGGAGGGGAAAAAGGAGG
AGGGGGAGGAAGAGTTGATGCAGCACCACGCAACGGCCGGCATGGAATGC
TTTTACGTCTAG
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protein sequence of NO10G00550.1

>NO10G00550.1-protein ID=NO10G00550.1-protein|Name=NO10G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MQNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWILGN
EWILEACQYVIVAGMVLVLLPTTLCFRFDDEKDHLTLSPATRAAVRRVAS
KRRQEIEGGKSRQVLVGEEQSRSRAVLVEGKKEEGEEELMQHHATAGMEC
FYV*
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Synonyms
Publications