jgi.p|Nanoce1779_2|638692, gene_4164 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|638692
Unique Name	gene_4164
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_8:1000424..1000891 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	638778
ProteinId	638692
Product name	expressed protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:1000424..1000891 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL004	ncniL004	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00550	NO10G00550	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638692	mRNA_4164-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638692	mRNA_4164	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|638692

>mRNA_4164-protein ID=mRNA_4164-protein|Name=jgi.p|Nanoce1779_2|638692|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MGMQNPPMEALFADSNDPGQRSKIFTWKYGLVQAGCAIGPLCSVMMFWIL
GNEWILEACQYVIVAGMVLVLLSTTLCFRFDDEKDHLTLSPATRAAVRRV
ASKRRQEIEGGKSRQVLVGEEQSRSRAVLVEGKKEEGEEELMQHHATAGM
ECFYV*

Synonyms

Publications