NO10G00250, NO10G00250 (gene) Nannochloropsis oceanica

Overview
NameNO10G00250
Unique NameNO10G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2016
Alignment locationchr10:87548..89563 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein L2 family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:87548..89563 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR012340NA-bd_OB-fold
IPR022666Rbsml_prot_L2_RNA-bd_dom
IPR002171Ribosomal_L2
IPR022669Ribosomal_L2_C
Homology
[Close]
BLAST of NO10G00250 vs. NCBI_GenBank
Match: XP_009039021.1 (hypothetical protein AURANDRAFT_54227 [Aureococcus anophagefferens] >EGB06450.1 hypothetical protein AURANDRAFT_54227 [Aureococcus anophagefferens])

HSP 1 Score: 404.1 bits (1037), Expect = 3.300e-109
Identity = 197/257 (76.65%), Postives = 217/257 (84.44%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGA-EKD 257
            MGKVIR CRKGKG IF +H +L K PVKLRK DYAEK GY+KGVVK IVHESGRGAP+A+VQF+N+YRF+RD E FVA EGLY G FI+ G KA L +GNVLP+S IPEGTV+ N EA PGDRG FAR SG YAV+V  DED GTTK+RLPSG KKTV S  R +IGI+AGGGRTDKP+LKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPST KR   AGKK GL+AARRTGRLRG+KK A +KD
Sbjct:    1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLKKTAVDKD 257
[Close]
BLAST of NO10G00250 vs. NCBI_GenBank
Match: CBJ28111.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 392.5 bits (1007), Expect = 1.000e-105
Identity = 185/254 (72.83%), Postives = 220/254 (86.61%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGAE 255
            MGKVIR  RKGKGGIF SH +L K PVKLRKLDYAE+HGYIKGVVK+++HE GRGAP+A+VQF+N Y+FKRD E  VAVEG+YSGQFI+ GKKASL +GN++P+  +PEGTV S++EA  GDRGTFAR SG YAV+++ DE++GT+K+RLPSG+KKT+SS  R ++GI+AGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A AG+K GL+AARRTGRLRGI+   E
Sbjct:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254
[Close]
BLAST of NO10G00250 vs. NCBI_GenBank
Match: POM61358.1 (60S ribosomal protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 384.4 bits (986), Expect = 2.700e-103
Identity = 185/256 (72.27%), Postives = 215/256 (83.98%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGAEKD 257
            MG+VIR  RKG G IFKSH  L K P   R LD+ E+ GYIKGVVKEI+H+SGRGAP+ARV +++ YRF+   E  +A EG+Y+G FI++G KASL +GN LPLS +PEGT+V NVEA  GDRG+FAR SG YAVIV  DED+G TK+RLPSG+KKTV S+ R +IG++AGGGRTDKP+LKAGRA+HKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTV+RDAPAGKK GL+AARRTGRLRGIKK  EKD
Sbjct:    1 MGRVIRGQRKGAGSIFKSHTHLRKGPAAFRALDFVERTGYIKGVVKEIIHDSGRGAPLARVMYRDPYRFQLKKELLIAAEGMYTGMFIYSGPKASLTVGNTLPLSALPEGTIVCNVEAKVGDRGSFARASGDYAVIVTHDEDKGKTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-VEKD 255
[Close]
BLAST of NO10G00250 vs. NCBI_GenBank
Match: XP_002998398.1 (60S ribosomal protein L8, putative [Phytophthora infestans T30-4] >EEY69751.1 60S ribosomal protein L8, putative [Phytophthora infestans T30-4])

HSP 1 Score: 384.0 bits (985), Expect = 3.600e-103
Identity = 185/256 (72.27%), Postives = 216/256 (84.38%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGAEKD 257
            MG+VIR  RKG G IFKSH  L K P   R LD+ E+ GYIKGVVKEI+H+SGRGAP+ARV +++ YRF+ + E  +A EG+Y+G FI++G KA+L +GN LPLS +PEGT+V NVEA  GDRG+FAR SG YAVIV  DED+G TK+RLPSG+KKTV S+ R +IG++AGGGRTDKPLLKAGRA+HKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTV+RDAPAGKK GL+AARRTGRLRGIKK  EKD
Sbjct:    1 MGRVIRGQRKGAGSIFKSHTHLRKGPAAFRALDFVERTGYIKGVVKEIIHDSGRGAPLARVTYRDPYRFQLNHELLIAAEGMYTGMFIYSGPKATLAVGNTLPLSALPEGTIVCNVEAKVGDRGSFARASGDYAVIVTHDEDKGKTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-VEKD 255
[Close]
BLAST of NO10G00250 vs. NCBI_GenBank
Match: XP_009823382.1 (60S ribosomal protein L8 [Aphanomyces astaci] >ETV86583.1 60S ribosomal protein L8 [Aphanomyces astaci])

HSP 1 Score: 383.3 bits (983), Expect = 6.100e-103
Identity = 181/256 (70.70%), Postives = 216/256 (84.38%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGAEKD 257
            MG+VIR  RKG GGIFKSH+K  K     R  DY E+ GYIKGV+KEI+H+ GRGAP+ARV F++ Y+++ + E  +A EG+Y+G FI+AGKKA++ +GN+LPLSQ+PEGT+V NVEA  GD+G FAR SG YAVIV  DED+G TKIRLPSG+KKT+ S+ R ++G++AGGGRTDKP+LKAGRAYHKYRVKRNEWP VRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKK GL+AARRTGRLRGIKK  +KD
Sbjct:    1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLIAARRTGRLRGIKK-TDKD 255
[Close]
BLAST of NO10G00250 vs. NCBI_GenBank
Match: OWZ21602.1 (60S ribosomal protein [Phytophthora megakarya])

HSP 1 Score: 382.9 bits (982), Expect = 8.000e-103
Identity = 184/256 (71.88%), Postives = 215/256 (83.98%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGAEKD 257
            MG+VIR  RKG G IFKSH  L K P   R LD+ E+ GYIKGVVKEI+H+SGRGAP+ARV +++ YRF+   E  +A EG+Y+G FI++G KA+L +GN LPLS +PEGT+V NVEA  GDRG+FAR SG YAVIV  DED+G TK+RLPSG+KKTV S+ R +IG++AGGGRTDKP+LKAGRA+HKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTV+RDAPAGKK GL+AARRTGRLRGIKK  EKD
Sbjct:    1 MGRVIRGQRKGAGSIFKSHTHLRKGPAAFRALDFVERTGYIKGVVKEIIHDSGRGAPLARVSYRDPYRFQIKKELLIAAEGMYTGMFIYSGPKAALTVGNTLPLSALPEGTIVCNVEAKVGDRGSFARASGDYAVIVTHDEDKGKTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-VEKD 255
[Close]
BLAST of NO10G00250 vs. NCBI_GenBank
Match: XP_008866291.1 (60S ribosomal protein L8 [Aphanomyces invadans] >ETW04853.1 60S ribosomal protein L8 [Aphanomyces invadans])

HSP 1 Score: 382.1 bits (980), Expect = 1.400e-102
Identity = 180/256 (70.31%), Postives = 216/256 (84.38%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGAEKD 257
            MG+VIR  RKG GGIFKSH+K  K     R  DY E+ GYIKGV+KEI+H+ GRGAP+ARV F++ Y+++ + E  +A EG+Y+G FI+AGKKA++ +GN+LPLSQ+PEGT+V NVEA  GD+G +AR SG YAVIV  DED+G TKIRLPSG+KKT+ S+ R ++G++AGGGRTDKP+LKAGRAYHKYRVKRNEWP VRGVAMNPVEHPHGGGNHQHIGHPSTV+RDAPAGKK GL+AARRTGRLRGIKK  EKD
Sbjct:    1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELMIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKYARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-TEKD 255
[Close]
BLAST of NO10G00250 vs. NCBI_GenBank
Match: XP_008909337.1 (60S ribosomal protein [Phytophthora parasitica INRA-310] >ETI40795.1 60S ribosomal protein [Phytophthora parasitica P1569] >ETK80907.1 60S ribosomal protein [Phytophthora parasitica] >ETL34322.1 60S ribosomal protein [Phytophthora parasitica] >ETL87599.1 60S ribosomal protein [Phytophthora parasitica] >ETM40832.1 60S ribosomal protein [Phytophthora parasitica] >ETN05362.1 60S ribosomal protein [Phytophthora parasitica INRA-310] >ETO69496.1 60S ribosomal protein [Phytophthora parasitica P1976] >ETP10571.1 60S ribosomal protein [Phytophthora parasitica CJ01A1] >ETP38738.1 60S ribosomal protein [Phytophthora parasitica P10297] >KUF90924.1 60S ribosomal protein L8 [Phytophthora nicotianae])

HSP 1 Score: 380.9 bits (977), Expect = 3.000e-102
Identity = 182/256 (71.09%), Postives = 215/256 (83.98%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGAEKD 257
            MG+VIR  RKG G IFKSH  L K P   R LD+ E+ GYIKGV+KEI+H+SGRGAP+A+V +++ YRF+   E  +A EG+Y+G FI++G KA+L +GN LPLS +PEGT+V NVEA  GDRG+FAR SG YAVIV  DED+G TK+RLPSG+KKTV S+ R +IG++AGGGRTDKP+LKAGRA+HKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTV+RDAPAGKK GL+AARRTGRLRGIKK  EKD
Sbjct:    1 MGRVIRGQRKGAGSIFKSHTHLRKGPAAFRALDFVERTGYIKGVIKEIIHDSGRGAPLAKVTYRDPYRFQLKHELLIAAEGMYTGMFIYSGPKATLTVGNTLPLSALPEGTIVCNVEAKVGDRGSFARASGDYAVIVTHDEDKGKTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-VEKD 255
[Close]
BLAST of NO10G00250 vs. NCBI_GenBank
Match: XP_024580655.1 (60s ribosomal protein [Plasmopara halstedii] >CEG44286.1 60s ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 380.9 bits (977), Expect = 3.000e-102
Identity = 184/256 (71.88%), Postives = 215/256 (83.98%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGAEKD 257
            MG+VIR  RKG G IFKSH  L K P   R LD+ E+ GYIKGVVKEIVH+SGRGAP+ARV +++ YR++   E  +A EG+Y+G FI++G KA+L +GN LPLS +PEGT+V NVEA  GDRG+FAR SG YAVIV  DED+G TK+RLPSG+KKTV S+ R +IG++AGGGRTDKP+LKAGRA+HKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTV+RDAPAGKK GL+AARRTGRLRGIKK  EKD
Sbjct:    1 MGRVIRGQRKGAGSIFKSHTHLRKGPAAFRALDFVERTGYIKGVVKEIVHDSGRGAPLARVTYRDPYRYQLRHELLIAAEGMYTGMFIYSGPKAALTVGNTLPLSALPEGTIVCNVEAKIGDRGSFARASGDYAVIVTHDEDKGKTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-VEKD 255
[Close]
BLAST of NO10G00250 vs. NCBI_GenBank
Match: OQR95462.1 (60S ribosomal protein L8 [Thraustotheca clavata])

HSP 1 Score: 380.6 bits (976), Expect = 4.000e-102
Identity = 180/256 (70.31%), Postives = 216/256 (84.38%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGAEKD 257
            MG+VIR  RKG G +F+SH K  K     R  DY E+ GYIKGV+KEI+H+ GRGAP+ARV F++ YR++ + E  +A EG+Y+G FI+AGKKA++ +GN+LPLSQ+PEGT+V NVEA  GD+G FAR SG YAVIV+ DED+G TKIRLPSG+KKTV S+ R ++G++AGGGRTDKP+LKAGRAYHKY+VKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTV+RDAPAGKK GL+AARRTGRLRGIKK  EKD
Sbjct:    1 MGRVIRGQRKGAGSVFRSHTKTRKGAAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYRYRINHELMIAAEGMYTGMFIYAGKKANMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVSHDEDKGKTKIRLPSGSKKTVPSACRAMVGVVAGGGRTDKPILKAGRAYHKYKVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIKK-LEKD 255
The following BLAST results are available for this feature:
BLAST of NO10G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009039021.13.300e-10976.65hypothetical protein AURANDRAFT_54227 [Aureococcus... [more]
CBJ28111.11.000e-10572.83conserved unknown protein [Ectocarpus siliculosus][more]
POM61358.12.700e-10372.2760S ribosomal protein [Phytophthora palmivora var.... [more]
XP_002998398.13.600e-10372.2760S ribosomal protein L8, putative [Phytophthora i... [more]
XP_009823382.16.100e-10370.7060S ribosomal protein L8 [Aphanomyces astaci] >ETV... [more]
OWZ21602.18.000e-10371.8860S ribosomal protein [Phytophthora megakarya][more]
XP_008866291.11.400e-10270.3160S ribosomal protein L8 [Aphanomyces invadans] >E... [more]
XP_008909337.13.000e-10271.0960S ribosomal protein [Phytophthora parasitica INR... [more]
XP_024580655.13.000e-10271.8860s ribosomal protein [Plasmopara halstedii] >CEG4... [more]
OQR95462.14.000e-10270.3160S ribosomal protein L8 [Thraustotheca clavata][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G00250.1NO10G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670358gene_4195Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_103446g1gene5249Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G00250.1NO10G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G00250 ID=NO10G00250|Name=NO10G00250|organism=Nannochloropsis oceanica|type=gene|length=2016bp
ATGGGGAAGGTCATCCGAAgtaagtgctggctcgcagaggagggagagga
gggagggagggagggaggaagggggatgagggcgtggcatggggcttcgt
gttgcctctttgcagtttctacttgctgcccctggtgtgtgtgtgcaaga
gaaattccacgatgtttgtcatggttcatagcgatgggaaatttgtatag
agactgccgggaacaaacggatgcccgggctctgatcattgctctcgtgt
cttaccccatccctcctacactcttcccccctctcctccccacagCGTGC
CGAAAGGGCAAAGGGGGTATCTTCAAGTCCCACATCAAGCTGAACAAGAA
CCCGGTCAAGCTCCGCAAGCTTGATTACGCGGAGAAACACGGgtagggag
ggaggaagggagggagggggagagggtgatgcgcgaggtggtcaagatag
tgatcgggacttgggagatagcttgccatttagcgtggaaagtatgaaaa
tgaattttgtaaatggaagcaatcttgggcaggtgggagaaaggagcatg
acatggacgtggagaaactcacatcttcctccctgtccgtccctccctcc
ctccttttcccagGTACATCAAGGGCGTGGTGAAGGAGATTGTGCACGAG
TCCGGACGTGGCGCCCCCGTGGCCCGCGTGCAATTCAAGAACGCCTACCG
CTTCAAGCGCGACACGGAGAGCTTCGTCGCCGTGGAGGGCTTGTACTCTG
gtgagggagggagggagggagggagggagggagggagggcgagctcaaag
tttgaatgctccgtgcatgtatgatgacatgcttcatgggcttcgtgaaa
agatctttcaaacgtcctggacaatgatggtagccaacattcttggtctc
ctctctcagcaccagtcactcaccacctccctcccttcctccctccctcc
tttcgtgacccacagGCCAGTTCATCTTCGCGGGGAAGAAGGCCTCGTTG
GTGATCGGCAATGTGCTGCCTCTGTCGCAGATCCCTGAGGGAACGGTCGT
TTCCAATGTGGAGGCCAGCCCCGGGGACCGAGgtagggagggagggagga
atggggaggaaaggggagggaggttgggagtgagtctcctctccacctct
gtcgagaaggctgtgtaggtccatgcttctcctccggcgttcacccactc
actcctccctccttccctccttccctccttccctccctccctccctccta
agGCACTTTCGCCCGTACCTCCGGTGGGTACGCCGTGATAGTTGCTCAGG
ACGAGGACCGCGGAACGACCAAGATCCGTCTGCCGTCAGGAGCCAAGAAG
ACCGTATCTTCCTCGGCCCGAGGGgtgagtgaaggaaagagggagggaga
aagggagggagggagggagggagagaggggaggtaggtgtataggtaccg
agtcgcttgattgacctggagctgactcccatgatgatgttcacacttgc
ccttccttctctttctccctcgtgcgtcctctccccccttatgtgatagG
TGATCGGCATCATTGCCGGTGGCGGACGCACGGACAAGCCCCTGCTCAAG
GCCGGCCGCGCCTACCACAAGTATCGCGTGAAGCGTAACGAGTGGCCTAA
Ggtatgtggctctttcgtctttcgtagtccttccctccctccctccctcc
ctccctccctctctctctctcttccaggttttttcccacgacttccattt
tccgaagctaccgctcgtgccatattgtacacctgctcatcagcttttcc
tccctccctccctccctccttccctcccttgtacagGTGCGAGGTGTGGC
AATGAACCCCGTGGAGCATCCTCACGGTGGCGGTAACCACCAGCATATTG
GACACCCGTCCACTGTCAAGCGCGATGCGCCCGCAGGGAAGAAGGCGGGC
TTGGTGGCTGCCCGCCGCACGGGTCGTCTGCGCGGCATTAAGAAGGGAGC
CGAGAAGGACACGTAA
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protein sequence of NO10G00250.1

>NO10G00250.1-protein ID=NO10G00250.1-protein|Name=NO10G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVH
ESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGN
VLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRL
PSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVR
GVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIK
KGAEKDT*
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