NO10G00250.1, NO10G00250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00250.1
Unique NameNO10G00250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length774
Alignment locationchr10:87548..89563 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:87548..89563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00250.1 vs.
Match: XP_009039021.1 (hypothetical protein AURANDRAFT_54227 [Aureococcus anophagefferens]; EGB06450.1 hypothetical protein AURANDRAFT_54227 [Aureococcus anophagefferens])

HSP 1 Score: 404.1 bits (1037), Expect = 3.300e-109
Identity = 197/257 (76.65%), Postives = 217/257 (84.44%), Query Frame = 0 
Query:    1 MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGNVLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIKKGA-EKD 257
            MGKVIR CRKGKG IF +H +L K PVKLRK DYAEK GY+KGVVK IVHESGRGAP+A+VQF+N+YRF+RD E FVA EGLY G FI+ G KA L +GNVLP+S IPEGTV+ N EA PGDRG FAR SG YAV+V  DED GTTK+RLPSG KKTV S  R +IGI+AGGGRTDKP+LKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPST KR   AGKK GL+AARRTGRLRG+KK A +KD
Sbjct:    1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLKKTAVDKD 257
The following BLAST results are available for this feature:
BLAST of NO10G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009039021.13.300e-10976.65hypothetical protein AURANDRAFT_54227 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00250NO10G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00250.1NO10G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00250.1.cds1NO10G00250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00250.1.cds2NO10G00250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00250.1.cds3NO10G00250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00250.1.cds4NO10G00250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00250.1.cds5NO10G00250.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00250.1.cds6NO10G00250.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00250.1.cds7NO10G00250.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00250.1 ID=NO10G00250.1|Name=NO10G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=774bp
ATGGGGAAGGTCATCCGAACGTGCCGAAAGGGCAAAGGGGGTATCTTCAA
GTCCCACATCAAGCTGAACAAGAACCCGGTCAAGCTCCGCAAGCTTGATT
ACGCGGAGAAACACGGGTACATCAAGGGCGTGGTGAAGGAGATTGTGCAC
GAGTCCGGACGTGGCGCCCCCGTGGCCCGCGTGCAATTCAAGAACGCCTA
CCGCTTCAAGCGCGACACGGAGAGCTTCGTCGCCGTGGAGGGCTTGTACT
CTGGCCAGTTCATCTTCGCGGGGAAGAAGGCCTCGTTGGTGATCGGCAAT
GTGCTGCCTCTGTCGCAGATCCCTGAGGGAACGGTCGTTTCCAATGTGGA
GGCCAGCCCCGGGGACCGAGGCACTTTCGCCCGTACCTCCGGTGGGTACG
CCGTGATAGTTGCTCAGGACGAGGACCGCGGAACGACCAAGATCCGTCTG
CCGTCAGGAGCCAAGAAGACCGTATCTTCCTCGGCCCGAGGGGTGATCGG
CATCATTGCCGGTGGCGGACGCACGGACAAGCCCCTGCTCAAGGCCGGCC
GCGCCTACCACAAGTATCGCGTGAAGCGTAACGAGTGGCCTAAGGTGCGA
GGTGTGGCAATGAACCCCGTGGAGCATCCTCACGGTGGCGGTAACCACCA
GCATATTGGACACCCGTCCACTGTCAAGCGCGATGCGCCCGCAGGGAAGA
AGGCGGGCTTGGTGGCTGCCCGCCGCACGGGTCGTCTGCGCGGCATTAAG
AAGGGAGCCGAGAAGGACACGTAA
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protein sequence of NO10G00250.1

>NO10G00250.1-protein ID=NO10G00250.1-protein|Name=NO10G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MGKVIRTCRKGKGGIFKSHIKLNKNPVKLRKLDYAEKHGYIKGVVKEIVH
ESGRGAPVARVQFKNAYRFKRDTESFVAVEGLYSGQFIFAGKKASLVIGN
VLPLSQIPEGTVVSNVEASPGDRGTFARTSGGYAVIVAQDEDRGTTKIRL
PSGAKKTVSSSARGVIGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPKVR
GVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKAGLVAARRTGRLRGIK
KGAEKDT*
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mRNA from alignment at chr10:87548..89563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00250.1 ID=NO10G00250.1|Name=NO10G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at chr10:87548..89563- (Nannochloropsis oceanica)
ATGGGGAAGGTCATCCGAAGTAAGTGCTGGCTCGCAGAGGAGGGAGAGGA
GGGAGGGAGGGAGGGAGGAAGGGGGATGAGGGCGTGGCATGGGGCTTCGT
GTTGCCTCTTTGCAGTTTCTACTTGCTGCCCCTGGTGTGTGTGTGCAAGA
GAAATTCCACGATGTTTGTCATGGTTCATAGCGATGGGAAATTTGTATAG
AGACTGCCGGGAACAAACGGATGCCCGGGCTCTGATCATTGCTCTCGTGT
CTTACCCCATCCCTCCTACACTCTTCCCCCCTCTCCTCCCCACAGCGTGC
CGAAAGGGCAAAGGGGGTATCTTCAAGTCCCACATCAAGCTGAACAAGAA
CCCGGTCAAGCTCCGCAAGCTTGATTACGCGGAGAAACACGGGTAGGGAG
GGAGGAAGGGAGGGAGGGGGAGAGGGTGATGCGCGAGGTGGTCAAGATAG
TGATCGGGACTTGGGAGATAGCTTGCCATTTAGCGTGGAAAGTATGAAAA
TGAATTTTGTAAATGGAAGCAATCTTGGGCAGGTGGGAGAAAGGAGCATG
ACATGGACGTGGAGAAACTCACATCTTCCTCCCTGTCCGTCCCTCCCTCC
CTCCTTTTCCCAGGTACATCAAGGGCGTGGTGAAGGAGATTGTGCACGAG
TCCGGACGTGGCGCCCCCGTGGCCCGCGTGCAATTCAAGAACGCCTACCG
CTTCAAGCGCGACACGGAGAGCTTCGTCGCCGTGGAGGGCTTGTACTCTG
GTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGAGCTCAAAG
TTTGAATGCTCCGTGCATGTATGATGACATGCTTCATGGGCTTCGTGAAA
AGATCTTTCAAACGTCCTGGACAATGATGGTAGCCAACATTCTTGGTCTC
CTCTCTCAGCACCAGTCACTCACCACCTCCCTCCCTTCCTCCCTCCCTCC
TTTCGTGACCCACAGGCCAGTTCATCTTCGCGGGGAAGAAGGCCTCGTTG
GTGATCGGCAATGTGCTGCCTCTGTCGCAGATCCCTGAGGGAACGGTCGT
TTCCAATGTGGAGGCCAGCCCCGGGGACCGAGGTAGGGAGGGAGGGAGGA
ATGGGGAGGAAAGGGGAGGGAGGTTGGGAGTGAGTCTCCTCTCCACCTCT
GTCGAGAAGGCTGTGTAGGTCCATGCTTCTCCTCCGGCGTTCACCCACTC
ACTCCTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCCTCCCTCCCTCCTA
AGGCACTTTCGCCCGTACCTCCGGTGGGTACGCCGTGATAGTTGCTCAGG
ACGAGGACCGCGGAACGACCAAGATCCGTCTGCCGTCAGGAGCCAAGAAG
ACCGTATCTTCCTCGGCCCGAGGGGTGAGTGAAGGAAAGAGGGAGGGAGA
AAGGGAGGGAGGGAGGGAGGGAGAGAGGGGAGGTAGGTGTATAGGTACCG
AGTCGCTTGATTGACCTGGAGCTGACTCCCATGATGATGTTCACACTTGC
CCTTCCTTCTCTTTCTCCCTCGTGCGTCCTCTCCCCCCTTATGTGATAGG
TGATCGGCATCATTGCCGGTGGCGGACGCACGGACAAGCCCCTGCTCAAG
GCCGGCCGCGCCTACCACAAGTATCGCGTGAAGCGTAACGAGTGGCCTAA
GGTATGTGGCTCTTTCGTCTTTCGTAGTCCTTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCTCTCTCTCTCTTCCAGGTTTTTTCCCACGACTTCCATTT
TCCGAAGCTACCGCTCGTGCCATATTGTACACCTGCTCATCAGCTTTTCC
TCCCTCCCTCCCTCCCTCCTTCCCTCCCTTGTACAGGTGCGAGGTGTGGC
AATGAACCCCGTGGAGCATCCTCACGGTGGCGGTAACCACCAGCATATTG
GACACCCGTCCACTGTCAAGCGCGATGCGCCCGCAGGGAAGAAGGCGGGC
TTGGTGGCTGCCCGCCGCACGGGTCGTCTGCGCGGCATTAAGAAGGGAGC
CGAGAAGGACACGTAA
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Coding sequence (CDS) from alignment at chr10:87548..89563-

>NO10G00250.1 ID=NO10G00250.1|Name=NO10G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr10:87548..89563- (Nannochloropsis oceanica)
ATGGGGAAGGTCATCCGAACGTGCCGAAAGGGCAAAGGGGGTATCTTCAA
GTCCCACATCAAGCTGAACAAGAACCCGGTCAAGCTCCGCAAGCTTGATT
ACGCGGAGAAACACGGGTACATCAAGGGCGTGGTGAAGGAGATTGTGCAC
GAGTCCGGACGTGGCGCCCCCGTGGCCCGCGTGCAATTCAAGAACGCCTA
CCGCTTCAAGCGCGACACGGAGAGCTTCGTCGCCGTGGAGGGCTTGTACT
CTGGCCAGTTCATCTTCGCGGGGAAGAAGGCCTCGTTGGTGATCGGCAAT
GTGCTGCCTCTGTCGCAGATCCCTGAGGGAACGGTCGTTTCCAATGTGGA
GGCCAGCCCCGGGGACCGAGGCACTTTCGCCCGTACCTCCGGTGGGTACG
CCGTGATAGTTGCTCAGGACGAGGACCGCGGAACGACCAAGATCCGTCTG
CCGTCAGGAGCCAAGAAGACCGTATCTTCCTCGGCCCGAGGGGTGATCGG
CATCATTGCCGGTGGCGGACGCACGGACAAGCCCCTGCTCAAGGCCGGCC
GCGCCTACCACAAGTATCGCGTGAAGCGTAACGAGTGGCCTAAGGTGCGA
GGTGTGGCAATGAACCCCGTGGAGCATCCTCACGGTGGCGGTAACCACCA
GCATATTGGACACCCGTCCACTGTCAAGCGCGATGCGCCCGCAGGGAAGA
AGGCGGGCTTGGTGGCTGCCCGCCGCACGGGTCGTCTGCGCGGCATTAAG
AAGGGAGCCGAGAAGGACACGTAA
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Synonyms
Publications