NO09G04300, NO09G04300 (gene) Nannochloropsis oceanica

Overview
NameNO09G04300
Unique NameNO09G04300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1005
Alignment locationchr9:1287459..1288463 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1287459..1288463 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO09G04300 vs. NCBI_GenBank
Match: EWM20344.1 (hypothetical protein Naga_100252g10 [Nannochloropsis gaditana])

HSP 1 Score: 311.2 bits (796), Expect = 3.800e-81
Identity = 159/326 (48.77%), Postives = 212/326 (65.03%), Query Frame = 0
Query:   24 HLQLHHPQPWTGYQALVPTLQPNINTTQYHVRIIIRVHHEHKELVQGLIHNLRHQQQF---FGSPTLSMDFALVPTELAGVPVTQEIARDFWSNPLDPFPHVYAVNLNESFFVAAKDRAASLKCTSKEAKEIARKHSKNAVRKVCQYDNHVYYQATDVAVQELLEGCNWCTHMLVTNDDNGYHPDFFRETLLTVPLPVKGDEPPKKKRFGNV------------PLKKQQQQRVLTAVEERRWDLVTTDFTTNGFYISAELKLGRLDLGGMLFSKEIVRKVGGFIAALPAKPRAIDAHNADWLFAEKAMIIGALAMVVKKLLFFHN 335
            H      +PW G Q L      N     +HVR IIRVHHE  +LV+G++H+L +QQQ    F  PTLSMDFALVPTE+ G+PV   IAR FW N  +PFPHVYA++L+++FF  A +RAA  KC+ +EA+E+A +  K A+ K+C+YDNHV+YQATDVAV EL   C WCTH ++TN DN YHP++ +ETLL +       +PP   ++G V             ++ ++ +R+L      +WD+VTTDFTT+G        LG +DLGG+LFSK I+    GFIA+LP+  RA  AHNADWLFA +A+ +GA A VV +LLFFHN
Sbjct:   62 HQLQEESKPWLGSQGLRAPSVSNATNIHHHVRFIIRVHHEQADLVKGMVHSLLYQQQLSVSFPYPTLSMDFALVPTEVRGIPVVDSIARYFWLNTAEPFPHVYALDLDQTFFDVAAERAAPFKCSKEEAREVANRAGKAAMIKICRYDNHVFYQATDVAVAELCR-CTWCTHAVITNGDNCYHPNYLKETLLEL-------DPPSDAQYGTVQERSDSSSGLKGQIRDKKTRRMLAWERGEQWDMVTTDFTTSGILSRGAWGLGFVDLGGILFSKRILMSAQGFIASLPSGSRAEQAHNADWLFAARALRLGARAHVVNQLLFFHN 379          
BLAST of NO09G04300 vs. NCBI_GenBank
Match: EWM29236.1 (hypothetical protein Naga_100119g17 [Nannochloropsis gaditana])

HSP 1 Score: 193.7 bits (491), Expect = 8.900e-46
Identity = 118/324 (36.42%), Postives = 156/324 (48.15%), Query Frame = 0
Query:   30 PQPWTGYQALVPTLQPNINTTQYHVRIIIRVHHEHKELVQGLIHNLRHQQQFF----GSPTLSMDFALVPTELAGVPVTQEIARDFWSNPLD--------------PFPHVYAVNLNESFFVAAKDRAASLKCTSKEAKEIARKHSKNAVRKVCQYDNHVYYQATDVAVQELLEGCNWCTHMLVTNDDNGYHPDFFRETLLTVPLPVKGDEPPKKKRFGNVPLKKQQQQRVLTAVEERRWDLVTTDFTTNG-FYISAELKLGRLDLGGMLFSKEIVRKVGGFIAALPAKPRAIDAHNADWLFAEKAMIIGALAMVVKKLLFFHN 335
            P  W G        +P     +YHVR+IIRVHH  +     LI  +R Q Q      GSP  ++DFALV TE  G+PV   IA   W    D              P P V+  +   SF+  A +R+A  +C++ +  E   K     VR  C YDNH YYQATDV + ++L GC WCTH+LVTN DN YHPDF    L                                      + DLVTTDF  +G   + A+ + G +DLGG+L SK +V K GGFIA+LP      + H+ D+ F  + + +GA   +V KL+FFHN
Sbjct:  163 PAAWLGVG------RPPHRVGEYHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHAL------------------------------------SPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN 444          
BLAST of NO09G04300 vs. NCBI_GenBank
Match: EWM25935.1 (hypothetical protein Naga_100134g8 [Nannochloropsis gaditana])

HSP 1 Score: 108.6 bits (270), Expect = 3.800e-20
Identity = 63/178 (35.39%), Postives = 94/178 (52.81%), Query Frame = 0
Query:   53 HVRIIIRVHHEHKELVQGLIHNLRHQQQFFGSPTLSMDFALVPTELAGVPVTQEIARDFWSNPLDPFPHVYAVNLNESFFVAAKDRAASLKCTSKEAKEIARKHSKNAVRKVCQYDNHVYYQATDVAVQELLEGCNWCTHMLVTNDDNGYHPDFFRETL-LTVPLPVKGDEPPKKKRF 230
            HVR++IR H   +  ++ LI+ LR Q +  G      DF LVPTE A +   Q +  +        F  +Y V L ++F+   K R + L CT        ++ + + V + C +D++VYY ATD A+   +  C  CTH+LVTN DNGY P F RET+  +  L + G   P+K+ F
Sbjct:   62 HVRVVIRTHAREQLQLRSLIYGLRAQSE--GQAGFKADFVLVPTEPASLQTYQRLCNEMNVG----FDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADLAIVGGIGPRKETF 233          
BLAST of NO09G04300 vs. NCBI_GenBank
Match: XP_005854167.1 (hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526] >XP_005854270.1 hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >EKU22088.1 hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >EKU22190.1 hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 87.0 bits (214), Expect = 1.200e-13
Identity = 61/220 (27.73%), Postives = 98/220 (44.55%), Query Frame = 0
Query:  119 FPHVYAVNLNESFFVAAKDRAASLKCTSKEAKEIARKHSKNAVRKVCQYDNHVYYQATDVAVQELLEGCNWCTHMLVTNDDNGYHPDFFRETLLTVPLPVKGDEPPKKKRFGNVPLKKQQQQRVLTAVEERRWDLVTTDFTTNGFYISAELKLGRLDLGGMLFSKEIV---RKVGGFIAALPAKPRAIDAHNADWLFAEKAMIIG-ALAMVVKKLLFFHN 335
            F  +Y V L ++F+   K R + L CT        ++ + + V + C +D++VYY ATD A+   +  C  CTH+LVTN DNGY P F +ET+                                     +  DL    FT      +  L +G LDLG +L    ++   R++  F+++LP      + H+AD+     A+  G + A+   +LL +HN
Sbjct:    5 FDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLQETV------------------------------------RQSADLAIVGFTHRNQAQTPVLGVGGLDLGAVLMRVGVLDHGRRL--FLSSLPVDAGPKEVHDADYWMVVNALERGLSFAVCKNQLLMYHN 186          
The following BLAST results are available for this feature:
BLAST of NO09G04300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM20344.13.800e-8148.77hypothetical protein Naga_100252g10 [Nannochlorops... [more]
EWM29236.18.900e-4636.42hypothetical protein Naga_100119g17 [Nannochlorops... [more]
EWM25935.13.800e-2035.39hypothetical protein Naga_100134g8 [Nannochloropsi... [more]
XP_005854167.11.200e-1327.73hypothetical protein NGA_0179802 [Nannochloropsis ... [more]
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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04300.1NO09G04300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04300.1NO09G04300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04300 ID=NO09G04300|Name=NO09G04300|organism=Nannochloropsis oceanica|type=gene|length=1005bp
ATGTTGGTCTCTAACTGGATGGCCTATTACTGGATACCTCCCTTCATATT
GGACGACGATGGACAGCGCCACCTTCAACTTCACCATCCGCAGCCTTGGA
CAGGGTATCAAGCCCTTGTTCCGACCCTTCAACCGAACATCAACACCACA
CAATATCATGTACGCATCATTATTCGTGTGCACCACGAACATAAGGAACT
AGTCCAGGGGCTAATCCATAACTTGCGACACCAGCAACAGTTTTTCGGGT
CTCCGACGTTAAGCATGGACTTCGCTCTGGTTCCCACGGAACTGGCTGGC
GTGCCCGTGACCCAGGAAATAGCTCGTGACTTTTGGTCCAATCCACTCGA
TCCCTTTCCACATGTCTACGCAGTCAATTTGAATGAAAGTTTTTTTGTAG
CCGCAAAAGATCGCGCCGCTTCTTTGAAATGCACATCGAAAGAAGCAAAG
GAGATCGCACGTAAGCATAGTAAAAACGCCGTACGTAAAGTGTGCCAGTA
TGACAATCATGTGTACTATCAGGCGACGGATGTAGCTGTACAGGAGCTGC
TAGAAGGATGTAATTGGTGCACACATATGCTCGTAACGAATGACGACAAC
GGATACCATCCTGACTTTTTCCGCGAGACATTACTTACTGTTCCTCTGCC
AGTAAAAGGTGACGAACCTCCCAAGAAGAAGAGATTTGGGAATGTCCCCC
TAAAAAAGCAGCAGCAGCAAAGAGTATTGACTGCGGTCGAGGAAAGGAGA
TGGGATCTTGTGACAACTGACTTTACTACCAATGGTTTCTATATTTCTGC
TGAGCTGAAGTTGGGGAGATTAGACTTGGGGGGGATGTTGTTCTCAAAGG
AGATCGTGAGGAAAGTAGGGGGATTTATTGCAGCCTTACCGGCTAAGCCC
AGGGCAATAGATGCACACAATGCCGATTGGTTGTTTGCAGAAAAGGCGAT
GATCATTGGTGCGCTGGCCATGGTGGTAAAGAAACTGCTCTTTTTCCACA
ATTGA
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protein sequence of NO09G04300.1

>NO09G04300.1-protein ID=NO09G04300.1-protein|Name=NO09G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MLVSNWMAYYWIPPFILDDDGQRHLQLHHPQPWTGYQALVPTLQPNINTT
QYHVRIIIRVHHEHKELVQGLIHNLRHQQQFFGSPTLSMDFALVPTELAG
VPVTQEIARDFWSNPLDPFPHVYAVNLNESFFVAAKDRAASLKCTSKEAK
EIARKHSKNAVRKVCQYDNHVYYQATDVAVQELLEGCNWCTHMLVTNDDN
GYHPDFFRETLLTVPLPVKGDEPPKKKRFGNVPLKKQQQQRVLTAVEERR
WDLVTTDFTTNGFYISAELKLGRLDLGGMLFSKEIVRKVGGFIAALPAKP
RAIDAHNADWLFAEKAMIIGALAMVVKKLLFFHN*
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Synonyms
Publications