NO09G04300.1, NO09G04300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04300.1
Unique NameNO09G04300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1005
Alignment locationchr9:1287459..1288463 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1287459..1288463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G04300.1 vs.
Match: EWM20344.1 (hypothetical protein Naga_100252g10 [Nannochloropsis gaditana])

HSP 1 Score: 311.2 bits (796), Expect = 3.800e-81
Identity = 159/326 (48.77%), Postives = 212/326 (65.03%), Query Frame = 0 
Query:   24 HLQLHHPQPWTGYQALVPTLQPNINTTQYHVRIIIRVHHEHKELVQGLIHNLRHQQQF---FGSPTLSMDFALVPTELAGVPVTQEIARDFWSNPLDPFPHVYAVNLNESFFVAAKDRAASLKCTSKEAKEIARKHSKNAVRKVCQYDNHVYYQATDVAVQELLEGCNWCTHMLVTNDDNGYHPDFFRETLLTVPLPVKGDEPPKKKRFGNV------------PLKKQQQQRVLTAVEERRWDLVTTDFTTNGFYISAELKLGRLDLGGMLFSKEIVRKVGGFIAALPAKPRAIDAHNADWLFAEKAMIIGALAMVVKKLLFFHN 335
            H      +PW G Q L      N     +HVR IIRVHHE  +LV+G++H+L +QQQ    F  PTLSMDFALVPTE+ G+PV   IAR FW N  +PFPHVYA++L+++FF  A +RAA  KC+ +EA+E+A +  K A+ K+C+YDNHV+YQATDVAV EL   C WCTH ++TN DN YHP++ +ETLL +       +PP   ++G V             ++ ++ +R+L      +WD+VTTDFTT+G        LG +DLGG+LFSK I+    GFIA+LP+  RA  AHNADWLFA +A+ +GA A VV +LLFFHN
Sbjct:   62 HQLQEESKPWLGSQGLRAPSVSNATNIHHHVRFIIRVHHEQADLVKGMVHSLLYQQQLSVSFPYPTLSMDFALVPTEVRGIPVVDSIARYFWLNTAEPFPHVYALDLDQTFFDVAAERAAPFKCSKEEAREVANRAGKAAMIKICRYDNHVFYQATDVAVAELCR-CTWCTHAVITNGDNCYHPNYLKETLLEL-------DPPSDAQYGTVQERSDSSSGLKGQIRDKKTRRMLAWERGEQWDMVTTDFTTSGILSRGAWGLGFVDLGGILFSKRILMSAQGFIASLPSGSRAEQAHNADWLFAARALRLGARAHVVNQLLFFHN 379
The following BLAST results are available for this feature:
BLAST of NO09G04300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20344.13.800e-8148.77hypothetical protein Naga_100252g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04300NO09G04300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04300.1NO09G04300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04300.1.cds1NO09G04300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04300.1 ID=NO09G04300.1|Name=NO09G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1005bp
ATGTTGGTCTCTAACTGGATGGCCTATTACTGGATACCTCCCTTCATATT
GGACGACGATGGACAGCGCCACCTTCAACTTCACCATCCGCAGCCTTGGA
CAGGGTATCAAGCCCTTGTTCCGACCCTTCAACCGAACATCAACACCACA
CAATATCATGTACGCATCATTATTCGTGTGCACCACGAACATAAGGAACT
AGTCCAGGGGCTAATCCATAACTTGCGACACCAGCAACAGTTTTTCGGGT
CTCCGACGTTAAGCATGGACTTCGCTCTGGTTCCCACGGAACTGGCTGGC
GTGCCCGTGACCCAGGAAATAGCTCGTGACTTTTGGTCCAATCCACTCGA
TCCCTTTCCACATGTCTACGCAGTCAATTTGAATGAAAGTTTTTTTGTAG
CCGCAAAAGATCGCGCCGCTTCTTTGAAATGCACATCGAAAGAAGCAAAG
GAGATCGCACGTAAGCATAGTAAAAACGCCGTACGTAAAGTGTGCCAGTA
TGACAATCATGTGTACTATCAGGCGACGGATGTAGCTGTACAGGAGCTGC
TAGAAGGATGTAATTGGTGCACACATATGCTCGTAACGAATGACGACAAC
GGATACCATCCTGACTTTTTCCGCGAGACATTACTTACTGTTCCTCTGCC
AGTAAAAGGTGACGAACCTCCCAAGAAGAAGAGATTTGGGAATGTCCCCC
TAAAAAAGCAGCAGCAGCAAAGAGTATTGACTGCGGTCGAGGAAAGGAGA
TGGGATCTTGTGACAACTGACTTTACTACCAATGGTTTCTATATTTCTGC
TGAGCTGAAGTTGGGGAGATTAGACTTGGGGGGGATGTTGTTCTCAAAGG
AGATCGTGAGGAAAGTAGGGGGATTTATTGCAGCCTTACCGGCTAAGCCC
AGGGCAATAGATGCACACAATGCCGATTGGTTGTTTGCAGAAAAGGCGAT
GATCATTGGTGCGCTGGCCATGGTGGTAAAGAAACTGCTCTTTTTCCACA
ATTGA
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protein sequence of NO09G04300.1

>NO09G04300.1-protein ID=NO09G04300.1-protein|Name=NO09G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MLVSNWMAYYWIPPFILDDDGQRHLQLHHPQPWTGYQALVPTLQPNINTT
QYHVRIIIRVHHEHKELVQGLIHNLRHQQQFFGSPTLSMDFALVPTELAG
VPVTQEIARDFWSNPLDPFPHVYAVNLNESFFVAAKDRAASLKCTSKEAK
EIARKHSKNAVRKVCQYDNHVYYQATDVAVQELLEGCNWCTHMLVTNDDN
GYHPDFFRETLLTVPLPVKGDEPPKKKRFGNVPLKKQQQQRVLTAVEERR
WDLVTTDFTTNGFYISAELKLGRLDLGGMLFSKEIVRKVGGFIAALPAKP
RAIDAHNADWLFAEKAMIIGALAMVVKKLLFFHN*
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mRNA from alignment at chr9:1287459..1288463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04300.1 ID=NO09G04300.1|Name=NO09G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1005bp|location=Sequence derived from alignment at chr9:1287459..1288463- (Nannochloropsis oceanica)
ATGTTGGTCTCTAACTGGATGGCCTATTACTGGATACCTCCCTTCATATT
GGACGACGATGGACAGCGCCACCTTCAACTTCACCATCCGCAGCCTTGGA
CAGGGTATCAAGCCCTTGTTCCGACCCTTCAACCGAACATCAACACCACA
CAATATCATGTACGCATCATTATTCGTGTGCACCACGAACATAAGGAACT
AGTCCAGGGGCTAATCCATAACTTGCGACACCAGCAACAGTTTTTCGGGT
CTCCGACGTTAAGCATGGACTTCGCTCTGGTTCCCACGGAACTGGCTGGC
GTGCCCGTGACCCAGGAAATAGCTCGTGACTTTTGGTCCAATCCACTCGA
TCCCTTTCCACATGTCTACGCAGTCAATTTGAATGAAAGTTTTTTTGTAG
CCGCAAAAGATCGCGCCGCTTCTTTGAAATGCACATCGAAAGAAGCAAAG
GAGATCGCACGTAAGCATAGTAAAAACGCCGTACGTAAAGTGTGCCAGTA
TGACAATCATGTGTACTATCAGGCGACGGATGTAGCTGTACAGGAGCTGC
TAGAAGGATGTAATTGGTGCACACATATGCTCGTAACGAATGACGACAAC
GGATACCATCCTGACTTTTTCCGCGAGACATTACTTACTGTTCCTCTGCC
AGTAAAAGGTGACGAACCTCCCAAGAAGAAGAGATTTGGGAATGTCCCCC
TAAAAAAGCAGCAGCAGCAAAGAGTATTGACTGCGGTCGAGGAAAGGAGA
TGGGATCTTGTGACAACTGACTTTACTACCAATGGTTTCTATATTTCTGC
TGAGCTGAAGTTGGGGAGATTAGACTTGGGGGGGATGTTGTTCTCAAAGG
AGATCGTGAGGAAAGTAGGGGGATTTATTGCAGCCTTACCGGCTAAGCCC
AGGGCAATAGATGCACACAATGCCGATTGGTTGTTTGCAGAAAAGGCGAT
GATCATTGGTGCGCTGGCCATGGTGGTAAAGAAACTGCTCTTTTTCCACA
ATTGA
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Coding sequence (CDS) from alignment at chr9:1287459..1288463-

>NO09G04300.1 ID=NO09G04300.1|Name=NO09G04300.1|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr9:1287459..1288463- (Nannochloropsis oceanica)
ATGTTGGTCTCTAACTGGATGGCCTATTACTGGATACCTCCCTTCATATT
GGACGACGATGGACAGCGCCACCTTCAACTTCACCATCCGCAGCCTTGGA
CAGGGTATCAAGCCCTTGTTCCGACCCTTCAACCGAACATCAACACCACA
CAATATCATGTACGCATCATTATTCGTGTGCACCACGAACATAAGGAACT
AGTCCAGGGGCTAATCCATAACTTGCGACACCAGCAACAGTTTTTCGGGT
CTCCGACGTTAAGCATGGACTTCGCTCTGGTTCCCACGGAACTGGCTGGC
GTGCCCGTGACCCAGGAAATAGCTCGTGACTTTTGGTCCAATCCACTCGA
TCCCTTTCCACATGTCTACGCAGTCAATTTGAATGAAAGTTTTTTTGTAG
CCGCAAAAGATCGCGCCGCTTCTTTGAAATGCACATCGAAAGAAGCAAAG
GAGATCGCACGTAAGCATAGTAAAAACGCCGTACGTAAAGTGTGCCAGTA
TGACAATCATGTGTACTATCAGGCGACGGATGTAGCTGTACAGGAGCTGC
TAGAAGGATGTAATTGGTGCACACATATGCTCGTAACGAATGACGACAAC
GGATACCATCCTGACTTTTTCCGCGAGACATTACTTACTGTTCCTCTGCC
AGTAAAAGGTGACGAACCTCCCAAGAAGAAGAGATTTGGGAATGTCCCCC
TAAAAAAGCAGCAGCAGCAAAGAGTATTGACTGCGGTCGAGGAAAGGAGA
TGGGATCTTGTGACAACTGACTTTACTACCAATGGTTTCTATATTTCTGC
TGAGCTGAAGTTGGGGAGATTAGACTTGGGGGGGATGTTGTTCTCAAAGG
AGATCGTGAGGAAAGTAGGGGGATTTATTGCAGCCTTACCGGCTAAGCCC
AGGGCAATAGATGCACACAATGCCGATTGGTTGTTTGCAGAAAAGGCGAT
GATCATTGGTGCGCTGGCCATGGTGGTAAAGAAACTGCTCTTTTTCCACA
ATTGA
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Synonyms
Publications