NO09G04160, NO09G04160 (gene) Nannochloropsis oceanica

Overview
NameNO09G04160
Unique NameNO09G04160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2324
Alignment locationchr9:1244040..1246363 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1244040..1246363 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G04160 vs. NCBI_GenBank
Match: GAX11237.1 (hypothetical protein FisN_34Hu042 [Fistulifera solaris])

HSP 1 Score: 95.5 bits (236), Expect = 4.300e-16
Identity = 89/350 (25.43%), Postives = 152/350 (43.43%), Query Frame = 0 
Query:   78 IDPACPRFVNVRFRWFERAGLGDRFFQLLVGLTYAIHLKAFLVNVDAEMSTNSTHGAYDWVPNFFKINYIN-SNMTMDAIKDRYGNLTIVERVEEYGSSYGERIQTLGSHCNTVIQIDNDDCVGGRE-CYFSSDP-------KIYEHMRYILGCWFLHTDRS--NLPVLIFESGWYNVAIHIRVGDVVLLDGDQGKGFFTRLKSQLDTVLTFS--PVHYYFFAEAPNDEWVNEILVPPPGFAFLADIFGDRSHRNEGEFSQRMSYIKHMGVKETLYHHMNADMVIATGSSFPLVAVTVSSKPVVLFTKSKEG--GFYPSQMRADYAMIGDDGAILSPTLAELSAQTLMRF 413
            ID +C RF  +   +   AGLG +  +++ G+  A    +  V  D     N THG+YDW+ +F  +N    +   ++A+       T+++R +   +   E      + CN +     + C    + CY +  P       ++   MR           RS  +L  L        +  H+R GD+VL   +  K  F +L SQ+ +VL+    PVH + + +        EI    P   +L   +          F    SY   + V+++LY+ + +D++I +GSSFP++A  + +  VVL    KE   G Y     A++ +I  DG I +P+L +L  Q    F
Sbjct:   68 IDTSCLRFATMEQTF--AAGLGHKVTEVIFGMVMAEETNSVFVLDDHIWLENGTHGSYDWLMDFLPLNETEFTKSELEALSSDTPVTTVLDRWDVVVNQSKEE----NNACNVLFSTRLEWCCDSADICYCTMHPPRIGSFDRVKWRMREAFSRSKYVPSRSLLDLGALPKNEPILTIVWHVRQGDIVL---NARKEHFDKLASQIASVLSIGRIPVHVFLYGD-------GEIFENFPFLPYLCQQY----------FGGNCSY-PALDVRDSLYYMIESDVLITSGSSFPIIAAVLRAHGVVLHEYPKEYVLGIYE---LAEHGLIEYDGTISTPSLRDLQYQLQFMF 387
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BLAST of NO09G04160 vs. NCBI_GenBank
Match: GAX11239.1 (hypothetical protein FisN_34Hu040 [Fistulifera solaris])

HSP 1 Score: 94.7 bits (234), Expect = 7.300e-16
Identity = 88/360 (24.44%), Postives = 150/360 (41.67%), Query Frame = 0 
Query:   78 IDPACPRFVNVRFRWFERAGLGDRFFQLLVGLTYAIHLKAFLVNVDAEMSTNSTHGAYDWVPNFFKINYINSNMTMDAIKDRYGNLTIVERVEEYGSSYGERIQTLGSHCNTVIQIDNDDCVGGRE-CYFSSD--------------PKIYEHMRYILGCWFLHTDRSNLPVLIFESGWYNVAIHIRVGDVVLLDGDQGKGFFTRLKSQLDTVLTFS--PVHYYFFAEAPNDEWVNEILVPPPGFAFLADIFGDRSHRNEGEFSQRMSYIKHMGVKETLYHHMNADMVIATGSSFPLVAVTVSSKPVVLFTKSKEG--GFYPSQMRADYAMIGDDGAILSPTLAELSAQTLMRFLEVHEK 419
            ID  CPRF  ++      AGLG +  +++ G+  A    +  +  D   +    HG+YDW+ NF  +N     M+  A   R      +  V +      ++ +   + CN +       C      CY ++                + +   +Y+     L  D   LP          +  H+R GD+VL   +  K  F  L SQ+ +VL+    PVH + + E    E           F FL D+        +  F    SY   + V+++LY+   +D++I +GSSFP++A  + +  VVL+   KE   G Y     AD+ +I  DG I +P++ +L  +  + F +  +K
Sbjct:   81 IDMNCPRFATMKHT--GNAGLGHKLTEVIFGMIIAEETNSTFLLDDTIWNHVGNHGSYDWLMNFLPLNETEFTMSEFA---RISKDNPIPTVLDRWDGLVDQSKNESNACNVLFMTYLHWCCDSANICYCTTQQARIGTFDRVKWRMQEAFSRSKYVPSLSLL--DLGKLPK---HEPILTIVWHVRQGDIVL---NAQKEHFDNLSSQITSVLSIGKIPVHVFIYGEGEVFE----------KFPFLPDLC-------QQYFGGNCSY-PTLDVRDSLYYMTESDVLITSGSSFPIIAAVLRTGGVVLYEYPKENVLGIYE---LADHGIIDRDGMITTPSMKDLQYRFQLIFNQKMKK 406
The following BLAST results are available for this feature:
BLAST of NO09G04160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
GAX11237.14.300e-1625.43hypothetical protein FisN_34Hu042 [Fistulifera sol... [more]
GAX11239.17.300e-1624.44hypothetical protein FisN_34Hu040 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04160.1NO09G04160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04160.1NO09G04160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04160 ID=NO09G04160|Name=NO09G04160|organism=Nannochloropsis oceanica|type=gene|length=2324bp
CAGGAGCACATGGACACAAATGACCACAAGCCAAGGCCCAGGTCAACTCA
GCTTTTACTGTCCTTCCGGCAAGGCATTTTTATCTCCACATGCCTCCTTA
CATTGATGGGCTTTTTGAATATCTTACGAgtaagttgaatgtaacagagc
gacaactaaggttcacgtaaaatttacgttactttgtgccatcttcatgg
aatgacagACGGAAATGCTGGTTGCCCAGAAAATATCGCACGTGAGCCAG
CAGCCGgtaagcgcaacgtagcgtgtatcattgtcataaccatgatcatt
acttcattgctctatccccttttattgacaacacaaataccaaacattct
ccaaagCCTACAGGATTGGATAACTCGTATTCGGGGCAGCTGCCCACGTG
CGACTTTCACCTTGGTGATATCGATCCCGCATGTCCGCGATTTGTTAATG
TTCGATTTCgtacgtgctatttaccttttcaacaataacttcatttcgta
ttatgaatgatatcgtatcatttgtttataaatttttaatgtgatacagG
GTGGTTCGAGCGAGCAGGGCTGGGAGACCGTTTCTTCCAGCTACTGGTCG
GACTTACCTATGCAATTCATCTCAAAGgtacataactttcatatctcagt
gctattgccaactctgacaagaaattatgatagcgcaagacaaatttatt
tttctgtaaccaatttcacagCTTTCCTTGTAAATGTAGACGCAGAAATG
AGTACCAACTCGACGCATGGCGCATACGATTGGGTGCCCAATTTTTTCAA
AATAAACTACATCAACTCGAACATGACGATGGACGCCATAAAGGATCGCT
ACGGCAATTTAACAATTGTGGAGCGGGTGGAAGAGgtaatgatgttttcg
gtgtctgaaaaaagagagaaccttacactctagtatccttaccctaaccc
aataagTACGGCAGCAGCTATGGAGAGAGGATTCAAACGCTGGGGTCACA
TTGCAACACTGTCATTCAAATTGACAATGACgtgagtaaagaggagagag
aggatataggcaattgaataaatcaaatacttcaaaataatcacattctc
gaatcgtgacagGATTGCGTCGGAGGACGTGAATGTTATTTCTCCTCCGA
TCCCAAAATTTATGAGCACATGCGTTACATTCTGGGCTGCTGGTTCCTGC
ACACCGACCGGTCAAATCTACCCGTACTTATCTTTGAATCGGGTTGGTAT
AATGTCGCTATCCATgtaagtcataacacaatatacttccaacgccagct
ctcctcccccattttccacccaatttgaataatgacctatcaatcgacct
tttagATACGCGTTGGTGACGTTGTGTTACTTGATGGCGACCAAGGGAAA
GGATTCTTTACGAGGCTCAAAAGCCAGCTCGACACAGTGCTTACCTTTTC
TCCTGTCCATTATTATTTTTTTGCTGAAGCGCCTAATGACGAATGGGTCA
ATGAGATTCTAGTTCCGCCTCCTGGATTCGCCTTTTTGGCTGACATCTTT
GGGGACAGAAGTCATCGAAATGAGGGTGAATTTTCACAGCGTATGTCCTA
TATCAAGCATATGGGTGTCAAAGAGACGCTTTACCATCACATGAATGCGG
ACATGGTAATTGCTACTGGCTCCTCGTTCCCACTGGTTGCAGTTACGGTG
TCATCTAAGgtatgttgcactaagataacgtcaattctggttctttcacc
ctttatccatctgacacacgttcctgcttttcccagCCGGTAGTGCTATT
CACCAAATCAAAAGAAGGAGGCTTTTATCCCTCCCAGATGCGAGCGGATT
ATGCAATGATAGGGGATGATGGGGCCATCTTATCACCCACGCTTGCAGAA
TTGTCGGCTCAAACCCTTATGCGATTCCTAGAAGTACACGAAAAGGAAGT
GCCTTATAGGTTAAAAATTCAATTTATGCAAGGCAGGTGGTGAGGCGACC
GCCACATCAGATCGACAACGAGCTTTATTCTGTCGATCTTATTTTGTTAC
GATGCAGTCGTTAGTCAGTTAAATTCTAGGTATGCTCAGTGAAATGGGGG
GAAGCCACAGTTATGGGCCTGTGATCCAGCGCGCCTCTCCCCGGCGCGCT
CGAGTACAGCTCAGACCACCCCCTCCCACTCAACCGCAAGATCAAGCCTG
TAAGGTGAATCACCTTCAAAACGCAGTCCTCCTACATTTTAGAAGTGCAA
AAAAGCATGTAACAAAGGAAAAACATAGAAGAAGCTTCTCGATGTCCATC
ATGTGTGGTCTGGGCGAATTCGTG
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protein sequence of NO09G04160.1

>NO09G04160.1-protein ID=NO09G04160.1-protein|Name=NO09G04160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MDTNDHKPRPRSTQLLLSFRQGIFISTCLLTLMGFLNILRTEMLVAQKIS
HVSQQPPTGLDNSYSGQLPTCDFHLGDIDPACPRFVNVRFRWFERAGLGD
RFFQLLVGLTYAIHLKAFLVNVDAEMSTNSTHGAYDWVPNFFKINYINSN
MTMDAIKDRYGNLTIVERVEEYGSSYGERIQTLGSHCNTVIQIDNDDCVG
GRECYFSSDPKIYEHMRYILGCWFLHTDRSNLPVLIFESGWYNVAIHIRV
GDVVLLDGDQGKGFFTRLKSQLDTVLTFSPVHYYFFAEAPNDEWVNEILV
PPPGFAFLADIFGDRSHRNEGEFSQRMSYIKHMGVKETLYHHMNADMVIA
TGSSFPLVAVTVSSKPVVLFTKSKEGGFYPSQMRADYAMIGDDGAILSPT
LAELSAQTLMRFLEVHEKEVPYRLKIQFMQGRW*
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Synonyms
Publications