NO09G04160.1, NO09G04160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04160.1
Unique NameNO09G04160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1642
Alignment locationchr9:1244040..1246363 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1244040..1246363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G04160.1 vs.
Match: GAX11237.1 (hypothetical protein FisN_34Hu042 [Fistulifera solaris])

HSP 1 Score: 95.5 bits (236), Expect = 4.300e-16
Identity = 89/350 (25.43%), Postives = 152/350 (43.43%), Query Frame = 0 
Query:   78 IDPACPRFVNVRFRWFERAGLGDRFFQLLVGLTYAIHLKAFLVNVDAEMSTNSTHGAYDWVPNFFKINYIN-SNMTMDAIKDRYGNLTIVERVEEYGSSYGERIQTLGSHCNTVIQIDNDDCVGGRE-CYFSSDP-------KIYEHMRYILGCWFLHTDRS--NLPVLIFESGWYNVAIHIRVGDVVLLDGDQGKGFFTRLKSQLDTVLTFS--PVHYYFFAEAPNDEWVNEILVPPPGFAFLADIFGDRSHRNEGEFSQRMSYIKHMGVKETLYHHMNADMVIATGSSFPLVAVTVSSKPVVLFTKSKEG--GFYPSQMRADYAMIGDDGAILSPTLAELSAQTLMRF 413
            ID +C RF  +   +   AGLG +  +++ G+  A    +  V  D     N THG+YDW+ +F  +N    +   ++A+       T+++R +   +   E      + CN +     + C    + CY +  P       ++   MR           RS  +L  L        +  H+R GD+VL   +  K  F +L SQ+ +VL+    PVH + + +        EI    P   +L   +          F    SY   + V+++LY+ + +D++I +GSSFP++A  + +  VVL    KE   G Y     A++ +I  DG I +P+L +L  Q    F
Sbjct:   68 IDTSCLRFATMEQTF--AAGLGHKVTEVIFGMVMAEETNSVFVLDDHIWLENGTHGSYDWLMDFLPLNETEFTKSELEALSSDTPVTTVLDRWDVVVNQSKEE----NNACNVLFSTRLEWCCDSADICYCTMHPPRIGSFDRVKWRMREAFSRSKYVPSRSLLDLGALPKNEPILTIVWHVRQGDIVL---NARKEHFDKLASQIASVLSIGRIPVHVFLYGDG-------EIFENFPFLPYLCQQY----------FGGNCSY-PALDVRDSLYYMIESDVLITSGSSFPIIAAVLRAHGVVLHEYPKEYVLGIYE---LAEHGLIEYDGTISTPSLRDLQYQLQFMF 387
The following BLAST results are available for this feature:
BLAST of NO09G04160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX11237.14.300e-1625.43hypothetical protein FisN_34Hu042 [Fistulifera sol... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04160NO09G04160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04160.1NO09G04160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04160.1.cds1NO09G04160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04160.1.cds2NO09G04160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04160.1.cds3NO09G04160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04160.1.cds4NO09G04160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04160.1.cds5NO09G04160.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04160.1.cds6NO09G04160.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04160.1.cds7NO09G04160.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04160.1.cds8NO09G04160.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04160.1.cds9NO09G04160.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04160.1 ID=NO09G04160.1|Name=NO09G04160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1642bp
CAGGAGCACATGGACACAAATGACCACAAGCCAAGGCCCAGGTCAACTCA
GCTTTTACTGTCCTTCCGGCAAGGCATTTTTATCTCCACATGCCTCCTTA
CATTGATGGGCTTTTTGAATATCTTACGAACGGAAATGCTGGTTGCCCAG
AAAATATCGCACGTGAGCCAGCAGCCGCCTACAGGATTGGATAACTCGTA
TTCGGGGCAGCTGCCCACGTGCGACTTTCACCTTGGTGATATCGATCCCG
CATGTCCGCGATTTGTTAATGTTCGATTTCGGTGGTTCGAGCGAGCAGGG
CTGGGAGACCGTTTCTTCCAGCTACTGGTCGGACTTACCTATGCAATTCA
TCTCAAAGCTTTCCTTGTAAATGTAGACGCAGAAATGAGTACCAACTCGA
CGCATGGCGCATACGATTGGGTGCCCAATTTTTTCAAAATAAACTACATC
AACTCGAACATGACGATGGACGCCATAAAGGATCGCTACGGCAATTTAAC
AATTGTGGAGCGGGTGGAAGAGTACGGCAGCAGCTATGGAGAGAGGATTC
AAACGCTGGGGTCACATTGCAACACTGTCATTCAAATTGACAATGACGAT
TGCGTCGGAGGACGTGAATGTTATTTCTCCTCCGATCCCAAAATTTATGA
GCACATGCGTTACATTCTGGGCTGCTGGTTCCTGCACACCGACCGGTCAA
ATCTACCCGTACTTATCTTTGAATCGGGTTGGTATAATGTCGCTATCCAT
ATACGCGTTGGTGACGTTGTGTTACTTGATGGCGACCAAGGGAAAGGATT
CTTTACGAGGCTCAAAAGCCAGCTCGACACAGTGCTTACCTTTTCTCCTG
TCCATTATTATTTTTTTGCTGAAGCGCCTAATGACGAATGGGTCAATGAG
ATTCTAGTTCCGCCTCCTGGATTCGCCTTTTTGGCTGACATCTTTGGGGA
CAGAAGTCATCGAAATGAGGGTGAATTTTCACAGCGTATGTCCTATATCA
AGCATATGGGTGTCAAAGAGACGCTTTACCATCACATGAATGCGGACATG
GTAATTGCTACTGGCTCCTCGTTCCCACTGGTTGCAGTTACGGTGTCATC
TAAGCCGGTAGTGCTATTCACCAAATCAAAAGAAGGAGGCTTTTATCCCT
CCCAGATGCGAGCGGATTATGCAATGATAGGGGATGATGGGGCCATCTTA
TCACCCACGCTTGCAGAATTGTCGGCTCAAACCCTTATGCGATTCCTAGA
AGTACACGAAAAGGAAGTGCCTTATAGGTTAAAAATTCAATTTATGCAAG
GCAGGTGGTGAGGCGACCGCCACATCAGATCGACAACGAGCTTTATTCTG
TCGATCTTATTTTGTTACGATGCAGTCGTTAGTCAGTTAAATTCTAGGTA
TGCTCAGTGAAATGGGGGGAAGCCACAGTTATGGGCCTGTGATCCAGCGC
GCCTCTCCCCGGCGCGCTCGAGTACAGCTCAGACCACCCCCTCCCACTCA
ACCGCAAGATCAAGCCTGTAAGGTGAATCACCTTCAAAACGCAGTCCTCC
TACATTTTAGAAGTGCAAAAAAGCATGTAACAAAGGAAAAACATAGAAGA
AGCTTCTCGATGTCCATCATGTGTGGTCTGGGCGAATTCGTG
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protein sequence of NO09G04160.1

>NO09G04160.1-protein ID=NO09G04160.1-protein|Name=NO09G04160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MDTNDHKPRPRSTQLLLSFRQGIFISTCLLTLMGFLNILRTEMLVAQKIS
HVSQQPPTGLDNSYSGQLPTCDFHLGDIDPACPRFVNVRFRWFERAGLGD
RFFQLLVGLTYAIHLKAFLVNVDAEMSTNSTHGAYDWVPNFFKINYINSN
MTMDAIKDRYGNLTIVERVEEYGSSYGERIQTLGSHCNTVIQIDNDDCVG
GRECYFSSDPKIYEHMRYILGCWFLHTDRSNLPVLIFESGWYNVAIHIRV
GDVVLLDGDQGKGFFTRLKSQLDTVLTFSPVHYYFFAEAPNDEWVNEILV
PPPGFAFLADIFGDRSHRNEGEFSQRMSYIKHMGVKETLYHHMNADMVIA
TGSSFPLVAVTVSSKPVVLFTKSKEGGFYPSQMRADYAMIGDDGAILSPT
LAELSAQTLMRFLEVHEKEVPYRLKIQFMQGRW*
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mRNA from alignment at chr9:1244040..1246363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04160.1 ID=NO09G04160.1|Name=NO09G04160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2324bp|location=Sequence derived from alignment at chr9:1244040..1246363- (Nannochloropsis oceanica)
CAGGAGCACATGGACACAAATGACCACAAGCCAAGGCCCAGGTCAACTCA
GCTTTTACTGTCCTTCCGGCAAGGCATTTTTATCTCCACATGCCTCCTTA
CATTGATGGGCTTTTTGAATATCTTACGAGTAAGTTGAATGTAACAGAGC
GACAACTAAGGTTCACGTAAAATTTACGTTACTTTGTGCCATCTTCATGG
AATGACAGACGGAAATGCTGGTTGCCCAGAAAATATCGCACGTGAGCCAG
CAGCCGGTAAGCGCAACGTAGCGTGTATCATTGTCATAACCATGATCATT
ACTTCATTGCTCTATCCCCTTTTATTGACAACACAAATACCAAACATTCT
CCAAAGCCTACAGGATTGGATAACTCGTATTCGGGGCAGCTGCCCACGTG
CGACTTTCACCTTGGTGATATCGATCCCGCATGTCCGCGATTTGTTAATG
TTCGATTTCGTACGTGCTATTTACCTTTTCAACAATAACTTCATTTCGTA
TTATGAATGATATCGTATCATTTGTTTATAAATTTTTAATGTGATACAGG
GTGGTTCGAGCGAGCAGGGCTGGGAGACCGTTTCTTCCAGCTACTGGTCG
GACTTACCTATGCAATTCATCTCAAAGGTACATAACTTTCATATCTCAGT
GCTATTGCCAACTCTGACAAGAAATTATGATAGCGCAAGACAAATTTATT
TTTCTGTAACCAATTTCACAGCTTTCCTTGTAAATGTAGACGCAGAAATG
AGTACCAACTCGACGCATGGCGCATACGATTGGGTGCCCAATTTTTTCAA
AATAAACTACATCAACTCGAACATGACGATGGACGCCATAAAGGATCGCT
ACGGCAATTTAACAATTGTGGAGCGGGTGGAAGAGGTAATGATGTTTTCG
GTGTCTGAAAAAAGAGAGAACCTTACACTCTAGTATCCTTACCCTAACCC
AATAAGTACGGCAGCAGCTATGGAGAGAGGATTCAAACGCTGGGGTCACA
TTGCAACACTGTCATTCAAATTGACAATGACGTGAGTAAAGAGGAGAGAG
AGGATATAGGCAATTGAATAAATCAAATACTTCAAAATAATCACATTCTC
GAATCGTGACAGGATTGCGTCGGAGGACGTGAATGTTATTTCTCCTCCGA
TCCCAAAATTTATGAGCACATGCGTTACATTCTGGGCTGCTGGTTCCTGC
ACACCGACCGGTCAAATCTACCCGTACTTATCTTTGAATCGGGTTGGTAT
AATGTCGCTATCCATGTAAGTCATAACACAATATACTTCCAACGCCAGCT
CTCCTCCCCCATTTTCCACCCAATTTGAATAATGACCTATCAATCGACCT
TTTAGATACGCGTTGGTGACGTTGTGTTACTTGATGGCGACCAAGGGAAA
GGATTCTTTACGAGGCTCAAAAGCCAGCTCGACACAGTGCTTACCTTTTC
TCCTGTCCATTATTATTTTTTTGCTGAAGCGCCTAATGACGAATGGGTCA
ATGAGATTCTAGTTCCGCCTCCTGGATTCGCCTTTTTGGCTGACATCTTT
GGGGACAGAAGTCATCGAAATGAGGGTGAATTTTCACAGCGTATGTCCTA
TATCAAGCATATGGGTGTCAAAGAGACGCTTTACCATCACATGAATGCGG
ACATGGTAATTGCTACTGGCTCCTCGTTCCCACTGGTTGCAGTTACGGTG
TCATCTAAGGTATGTTGCACTAAGATAACGTCAATTCTGGTTCTTTCACC
CTTTATCCATCTGACACACGTTCCTGCTTTTCCCAGCCGGTAGTGCTATT
CACCAAATCAAAAGAAGGAGGCTTTTATCCCTCCCAGATGCGAGCGGATT
ATGCAATGATAGGGGATGATGGGGCCATCTTATCACCCACGCTTGCAGAA
TTGTCGGCTCAAACCCTTATGCGATTCCTAGAAGTACACGAAAAGGAAGT
GCCTTATAGGTTAAAAATTCAATTTATGCAAGGCAGGTGGTGAGGCGACC
GCCACATCAGATCGACAACGAGCTTTATTCTGTCGATCTTATTTTGTTAC
GATGCAGTCGTTAGTCAGTTAAATTCTAGGTATGCTCAGTGAAATGGGGG
GAAGCCACAGTTATGGGCCTGTGATCCAGCGCGCCTCTCCCCGGCGCGCT
CGAGTACAGCTCAGACCACCCCCTCCCACTCAACCGCAAGATCAAGCCTG
TAAGGTGAATCACCTTCAAAACGCAGTCCTCCTACATTTTAGAAGTGCAA
AAAAGCATGTAACAAAGGAAAAACATAGAAGAAGCTTCTCGATGTCCATC
ATGTGTGGTCTGGGCGAATTCGTG
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Coding sequence (CDS) from alignment at chr9:1244040..1246363-

>NO09G04160.1 ID=NO09G04160.1|Name=NO09G04160.1|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr9:1244040..1246363- (Nannochloropsis oceanica)
ATGGACACAAATGACCACAAGCCAAGGCCCAGGTCAACTCAGCTTTTACT
GTCCTTCCGGCAAGGCATTTTTATCTCCACATGCCTCCTTACATTGATGG
GCTTTTTGAATATCTTACGAACGGAAATGCTGGTTGCCCAGAAAATATCG
CACGTGAGCCAGCAGCCGCCTACAGGATTGGATAACTCGTATTCGGGGCA
GCTGCCCACGTGCGACTTTCACCTTGGTGATATCGATCCCGCATGTCCGC
GATTTGTTAATGTTCGATTTCGGTGGTTCGAGCGAGCAGGGCTGGGAGAC
CGTTTCTTCCAGCTACTGGTCGGACTTACCTATGCAATTCATCTCAAAGC
TTTCCTTGTAAATGTAGACGCAGAAATGAGTACCAACTCGACGCATGGCG
CATACGATTGGGTGCCCAATTTTTTCAAAATAAACTACATCAACTCGAAC
ATGACGATGGACGCCATAAAGGATCGCTACGGCAATTTAACAATTGTGGA
GCGGGTGGAAGAGTACGGCAGCAGCTATGGAGAGAGGATTCAAACGCTGG
GGTCACATTGCAACACTGTCATTCAAATTGACAATGACGATTGCGTCGGA
GGACGTGAATGTTATTTCTCCTCCGATCCCAAAATTTATGAGCACATGCG
TTACATTCTGGGCTGCTGGTTCCTGCACACCGACCGGTCAAATCTACCCG
TACTTATCTTTGAATCGGGTTGGTATAATGTCGCTATCCATATACGCGTT
GGTGACGTTGTGTTACTTGATGGCGACCAAGGGAAAGGATTCTTTACGAG
GCTCAAAAGCCAGCTCGACACAGTGCTTACCTTTTCTCCTGTCCATTATT
ATTTTTTTGCTGAAGCGCCTAATGACGAATGGGTCAATGAGATTCTAGTT
CCGCCTCCTGGATTCGCCTTTTTGGCTGACATCTTTGGGGACAGAAGTCA
TCGAAATGAGGGTGAATTTTCACAGCGTATGTCCTATATCAAGCATATGG
GTGTCAAAGAGACGCTTTACCATCACATGAATGCGGACATGGTAATTGCT
ACTGGCTCCTCGTTCCCACTGGTTGCAGTTACGGTGTCATCTAAGCCGGT
AGTGCTATTCACCAAATCAAAAGAAGGAGGCTTTTATCCCTCCCAGATGC
GAGCGGATTATGCAATGATAGGGGATGATGGGGCCATCTTATCACCCACG
CTTGCAGAATTGTCGGCTCAAACCCTTATGCGATTCCTAGAAGTACACGA
AAAGGAAGTGCCTTATAGGTTAAAAATTCAATTTATGCAAGGCAGGTGGT
GA
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Synonyms
Publications