NO09G04120, NO09G04120 (gene) Nannochloropsis oceanica

Overview
NameNO09G04120
Unique NameNO09G04120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1705
Alignment locationchr9:1230015..1231719 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1230015..1231719 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR013656PAS_4
IPR000014PAS
Homology
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BLAST of NO09G04120 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 2.100e-15
Identity = 58/143 (40.56%), Postives = 81/143 (56.64%), Query Frame = 0 
Query:  235 PSAEKQ--RRASKEDLSGLTAEERVQRRKIRARMYNRMSRHRRNQLHGELRSDVSRMLIYKNIVDGAPDMICVISPDIQSRVLYINKAARCVLHTDPAQLVGSSFWDIVHTEDKMALFRALTTVTIFKSAGKVERLRCRVVTN 376
            PSA +   +RA + DLSG T  E+ +RRK RARMY+   R R+N     LR  V  + +YK +VD AP++  V+S D Q++VLY N A        P   VG S W++VH EDK  +  A  +  + K   +V R RCR+ T+
Sbjct:  270 PSARRSEGKRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKE--EVGRARCRLGTS 410
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BLAST of NO09G04120 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 87.0 bits (214), Expect = 1.500e-13
Identity = 56/180 (31.11%), Postives = 96/180 (53.33%), Query Frame = 0 
Query:  234 LPSAEKQRRASKEDLSGLTAEERVQRRKIRARMYNRMSRHRRNQLHGELRSDVSRMLIYKNIVDGAPDMICVISPDIQSRVLYINKAARCVLHTDP-----AQLVGSSFWDIVHTEDKMALFRALTTVTIFKSAGKVERLRCRV----------VTNNPGEYVSVRMTLANGMQGIVCVM 399
            L +  K+RRA + D S LT EE++Q +K RAR Y+ M+R R+++    LR++V R+ +YK +V+ APD + ++S D Q R+L+ NK +  +    P       L G   W+ +   D++A+F A+  V + K    V  + C V              P + + V +TL +  QG++ ++
Sbjct:  319 LTTLGKKRRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHL--VRAVPCTVWLPSGSVPKHDARGPQQSLKVLITLRSSAQGLILII 496
The following BLAST results are available for this feature:
BLAST of NO09G04120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23721.12.100e-1540.56conserved unknown protein [Nannochloropsis gaditan... [more]
EWM23655.11.500e-1331.11pas pac sensor hybrid histidine kinase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04120.1NO09G04120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607245gene_9665Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04120.1NO09G04120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04120 ID=NO09G04120|Name=NO09G04120|organism=Nannochloropsis oceanica|type=gene|length=1705bp
ATGGCTTTCGCTACACGCTATACTCCTATTGTGGATTTCGGTCTCATCAC
TGATCAGCGGCAAAATCAGAATCAAAGCGGCTATCTGCATACAGTAAAAC
AGCCGCACAATAGTTTGTTATCGACTCTCTTAGACAATAAGAAGGCACAC
GATGGCGCTATGGCCCTGTGCTGCCTGACAACACGCTCCGCCGGTGCTGA
CCCACTTCCTGTCTCCACGCCACCTTACTCCTCGTCTTGGGCCTCTTCTC
TCTTAGCAGCGAATCGCAgtacgttgctcgaactcgatctgtgcttagta
cttcgtagctacacttctatgctttcatgtacacatttccccgattcgct
tgaatcattatcccacgcctcatacgctcccatgcacatgggcagacacg
cacacaaagtgcacacaattgtccacatgcgcaccacttacgtgtagcaa
ggctatccatagacacgtgtactcatgtactcacttacacacataccttc
tccccccctgtacgcaaccttagAACTTCAGAAGCAGGCGGTTGACAAAT
CATTGCAACCCTTTCTTACCCAGTACCAGCAAAATTTTCGCCCGTTGCCC
ATTCATCGGTACCCTATCCGTAAGTATAAGGTGACCAATTTACTCTCCAA
GGCCTCGCTCTCTTTTCAAGCACAGCAGCAGCAGTATCAGTACCAGCAGC
ACCTCAAAAGAAGCCACCCACCACTGCAGCTCCACTACCCTCCACAATGC
CAAATGCAGCCGCCGCTTGAGAAGCAGCATGTGAAGGCGTCGACCAAGTG
CTTTTTGATAAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGCAC
CGCTGAGTGAAGCCTCCTTGCCTCTGCAACAGATTCGAAATGGTGTCATG
GGTGTTTCGGTGGGACTGCTGCCTGGCAGATGCTCCAAGATCATGAGAAA
GTACCTTCCGgtaagagacatgagagagatatgctttgcttttgcatgtc
tgatataacctcatatggcaactgacttttcttctcttcattcactcgtt
ctccccgtacaacagAGCGCGGAAAAGCAGCGACGAGCGTCGAAAGAGGA
CTTGTCGGGTCTAACTGCGGAGGAGAGAGTACAGCGACGCAAGATACGTG
CTCGCATGTACAACCGCATGTCTCGCCACCGCCGCAATCAGCTGCATGGT
GAGCTGCGCAGCGACGTGAGTCGCATGCTGATCTACAAGAATATTGTCGA
TGGTGCGCCAGACATGATATGTGTCATTTCCCCCGACATTCAGAGCCGGG
TGCTATACATCAACAAGGCCGCTCGATGTGTCCTCCATACTGACCCCGCG
CAGCTGGTGGGGTCCAGCTTCTGGGACATCGTCCACACGGAAGATAAAAT
GGCTCTATTCAGGGCTCTCACCACCGTCACTATATTCAAGTCGGCCGGAA
AAGTGGAAAGGCTACGCTGTCGTGTCGTCACCAACAACCCCGGTGAATAT
GTGTCTGTCCGGATGACGCTCGCGAATGGAATGCAGGGCATTGTCTGCGT
TATGTGCCACGGAGATTCTCTGTCTGCCATTTCGCGTGTGTTATCTGACG
GACGACAGTGTGTCATATAGGATGGTCTCTTAGAAATGGTATGATGATCT
GATAGTGGTTGACCAAACGGGCTAAAGTAGATATCAGAGTAGAATCGAAA
AAGAA
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protein sequence of NO09G04120.1

>NO09G04120.1-protein ID=NO09G04120.1-protein|Name=NO09G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MAFATRYTPIVDFGLITDQRQNQNQSGYLHTVKQPHNSLLSTLLDNKKAH
DGAMALCCLTTRSAGADPLPVSTPPYSSSWASSLLAANRKLQKQAVDKSL
QPFLTQYQQNFRPLPIHRYPIRKYKVTNLLSKASLSFQAQQQQYQYQQHL
KRSHPPLQLHYPPQCQMQPPLEKQHVKASTKCFLINELVEAKRYPPIAPL
SEASLPLQQIRNGVMGVSVGLLPGRCSKIMRKYLPSAEKQRRASKEDLSG
LTAEERVQRRKIRARMYNRMSRHRRNQLHGELRSDVSRMLIYKNIVDGAP
DMICVISPDIQSRVLYINKAARCVLHTDPAQLVGSSFWDIVHTEDKMALF
RALTTVTIFKSAGKVERLRCRVVTNNPGEYVSVRMTLANGMQGIVCVMCH
GDSLSAISRVLSDGRQCVI*
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Synonyms
Publications