NO09G04120.1, NO09G04120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04120.1
Unique NameNO09G04120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1345
Alignment locationchr9:1230015..1231719 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1230015..1231719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G04120.1 vs.
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 94.4 bits (233), Expect = 9.200e-16
Identity = 65/186 (34.95%), Postives = 94/186 (50.54%), Query Frame = 0 
Query:  235 PSAEKQ--RRASKEDLSGLTAEERVQRRKIRARMYNRMSRHRRNQLHGELRSDVSRMLIYKNIVDGAPDMICVISPDIQSRVLYINKAARCVLHTDPAQLVGSSFWDIVHTEDKMALFRALTTVTIFKSAGKVERLRCRVVTNN----------------PGEYVSVRMTLANGMQGIVCVMCHGD 403
            PSA +   +RA + DLSG T  E+ +RRK RARMY+   R R+N     LR  V  + +YK +VD AP++  V+S D Q++VLY N A        P   VG S W++VH EDK  +  A  +  + K   +V R RCR+ T+                     V V +++  G QG++ V+   D
Sbjct:  270 PSARRSEGKRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKE--EVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRED 453
The following BLAST results are available for this feature:
BLAST of NO09G04120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23721.19.200e-1634.95conserved unknown protein [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04120NO09G04120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04120.1NO09G04120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04120.1.cds1NO09G04120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04120.1.cds2NO09G04120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04120.1.cds3NO09G04120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04120.1 ID=NO09G04120.1|Name=NO09G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1345bp
ATGGCTTTCGCTACACGCTATACTCCTATTGTGGATTTCGGTCTCATCAC
TGATCAGCGGCAAAATCAGAATCAAAGCGGCTATCTGCATACAGTAAAAC
AGCCGCACAATAGTTTGTTATCGACTCTCTTAGACAATAAGAAGGCACAC
GATGGCGCTATGGCCCTGTGCTGCCTGACAACACGCTCCGCCGGTGCTGA
CCCACTTCCTGTCTCCACGCCACCTTACTCCTCGTCTTGGGCCTCTTCTC
TCTTAGCAGCGAATCGCAAACTTCAGAAGCAGGCGGTTGACAAATCATTG
CAACCCTTTCTTACCCAGTACCAGCAAAATTTTCGCCCGTTGCCCATTCA
TCGGTACCCTATCCGTAAGTATAAGGTGACCAATTTACTCTCCAAGGCCT
CGCTCTCTTTTCAAGCACAGCAGCAGCAGTATCAGTACCAGCAGCACCTC
AAAAGAAGCCACCCACCACTGCAGCTCCACTACCCTCCACAATGCCAAAT
GCAGCCGCCGCTTGAGAAGCAGCATGTGAAGGCGTCGACCAAGTGCTTTT
TGATAAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGCACCGCTG
AGTGAAGCCTCCTTGCCTCTGCAACAGATTCGAAATGGTGTCATGGGTGT
TTCGGTGGGACTGCTGCCTGGCAGATGCTCCAAGATCATGAGAAAGTACC
TTCCGAGCGCGGAAAAGCAGCGACGAGCGTCGAAAGAGGACTTGTCGGGT
CTAACTGCGGAGGAGAGAGTACAGCGACGCAAGATACGTGCTCGCATGTA
CAACCGCATGTCTCGCCACCGCCGCAATCAGCTGCATGGTGAGCTGCGCA
GCGACGTGAGTCGCATGCTGATCTACAAGAATATTGTCGATGGTGCGCCA
GACATGATATGTGTCATTTCCCCCGACATTCAGAGCCGGGTGCTATACAT
CAACAAGGCCGCTCGATGTGTCCTCCATACTGACCCCGCGCAGCTGGTGG
GGTCCAGCTTCTGGGACATCGTCCACACGGAAGATAAAATGGCTCTATTC
AGGGCTCTCACCACCGTCACTATATTCAAGTCGGCCGGAAAAGTGGAAAG
GCTACGCTGTCGTGTCGTCACCAACAACCCCGGTGAATATGTGTCTGTCC
GGATGACGCTCGCGAATGGAATGCAGGGCATTGTCTGCGTTATGTGCCAC
GGAGATTCTCTGTCTGCCATTTCGCGTGTGTTATCTGACGGACGACAGTG
TGTCATATAGGATGGTCTCTTAGAAATGGTATGATGATCTGATAGTGGTT
GACCAAACGGGCTAAAGTAGATATCAGAGTAGAATCGAAAAAGAA
back to top

protein sequence of NO09G04120.1

>NO09G04120.1-protein ID=NO09G04120.1-protein|Name=NO09G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MAFATRYTPIVDFGLITDQRQNQNQSGYLHTVKQPHNSLLSTLLDNKKAH
DGAMALCCLTTRSAGADPLPVSTPPYSSSWASSLLAANRKLQKQAVDKSL
QPFLTQYQQNFRPLPIHRYPIRKYKVTNLLSKASLSFQAQQQQYQYQQHL
KRSHPPLQLHYPPQCQMQPPLEKQHVKASTKCFLINELVEAKRYPPIAPL
SEASLPLQQIRNGVMGVSVGLLPGRCSKIMRKYLPSAEKQRRASKEDLSG
LTAEERVQRRKIRARMYNRMSRHRRNQLHGELRSDVSRMLIYKNIVDGAP
DMICVISPDIQSRVLYINKAARCVLHTDPAQLVGSSFWDIVHTEDKMALF
RALTTVTIFKSAGKVERLRCRVVTNNPGEYVSVRMTLANGMQGIVCVMCH
GDSLSAISRVLSDGRQCVI*
back to top

mRNA from alignment at chr9:1230015..1231719+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04120.1 ID=NO09G04120.1|Name=NO09G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp|location=Sequence derived from alignment at chr9:1230015..1231719+ (Nannochloropsis oceanica)
ATGGCTTTCGCTACACGCTATACTCCTATTGTGGATTTCGGTCTCATCAC
TGATCAGCGGCAAAATCAGAATCAAAGCGGCTATCTGCATACAGTAAAAC
AGCCGCACAATAGTTTGTTATCGACTCTCTTAGACAATAAGAAGGCACAC
GATGGCGCTATGGCCCTGTGCTGCCTGACAACACGCTCCGCCGGTGCTGA
CCCACTTCCTGTCTCCACGCCACCTTACTCCTCGTCTTGGGCCTCTTCTC
TCTTAGCAGCGAATCGCAGTACGTTGCTCGAACTCGATCTGTGCTTAGTA
CTTCGTAGCTACACTTCTATGCTTTCATGTACACATTTCCCCGATTCGCT
TGAATCATTATCCCACGCCTCATACGCTCCCATGCACATGGGCAGACACG
CACACAAAGTGCACACAATTGTCCACATGCGCACCACTTACGTGTAGCAA
GGCTATCCATAGACACGTGTACTCATGTACTCACTTACACACATACCTTC
TCCCCCCCTGTACGCAACCTTAGAACTTCAGAAGCAGGCGGTTGACAAAT
CATTGCAACCCTTTCTTACCCAGTACCAGCAAAATTTTCGCCCGTTGCCC
ATTCATCGGTACCCTATCCGTAAGTATAAGGTGACCAATTTACTCTCCAA
GGCCTCGCTCTCTTTTCAAGCACAGCAGCAGCAGTATCAGTACCAGCAGC
ACCTCAAAAGAAGCCACCCACCACTGCAGCTCCACTACCCTCCACAATGC
CAAATGCAGCCGCCGCTTGAGAAGCAGCATGTGAAGGCGTCGACCAAGTG
CTTTTTGATAAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGCAC
CGCTGAGTGAAGCCTCCTTGCCTCTGCAACAGATTCGAAATGGTGTCATG
GGTGTTTCGGTGGGACTGCTGCCTGGCAGATGCTCCAAGATCATGAGAAA
GTACCTTCCGGTAAGAGACATGAGAGAGATATGCTTTGCTTTTGCATGTC
TGATATAACCTCATATGGCAACTGACTTTTCTTCTCTTCATTCACTCGTT
CTCCCCGTACAACAGAGCGCGGAAAAGCAGCGACGAGCGTCGAAAGAGGA
CTTGTCGGGTCTAACTGCGGAGGAGAGAGTACAGCGACGCAAGATACGTG
CTCGCATGTACAACCGCATGTCTCGCCACCGCCGCAATCAGCTGCATGGT
GAGCTGCGCAGCGACGTGAGTCGCATGCTGATCTACAAGAATATTGTCGA
TGGTGCGCCAGACATGATATGTGTCATTTCCCCCGACATTCAGAGCCGGG
TGCTATACATCAACAAGGCCGCTCGATGTGTCCTCCATACTGACCCCGCG
CAGCTGGTGGGGTCCAGCTTCTGGGACATCGTCCACACGGAAGATAAAAT
GGCTCTATTCAGGGCTCTCACCACCGTCACTATATTCAAGTCGGCCGGAA
AAGTGGAAAGGCTACGCTGTCGTGTCGTCACCAACAACCCCGGTGAATAT
GTGTCTGTCCGGATGACGCTCGCGAATGGAATGCAGGGCATTGTCTGCGT
TATGTGCCACGGAGATTCTCTGTCTGCCATTTCGCGTGTGTTATCTGACG
GACGACAGTGTGTCATATAGGATGGTCTCTTAGAAATGGTATGATGATCT
GATAGTGGTTGACCAAACGGGCTAAAGTAGATATCAGAGTAGAATCGAAA
AAGAA
back to top

Coding sequence (CDS) from alignment at chr9:1230015..1231719+

>NO09G04120.1 ID=NO09G04120.1|Name=NO09G04120.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr9:1230015..1231719+ (Nannochloropsis oceanica)
ATGGCTTTCGCTACACGCTATACTCCTATTGTGGATTTCGGTCTCATCAC
TGATCAGCGGCAAAATCAGAATCAAAGCGGCTATCTGCATACAGTAAAAC
AGCCGCACAATAGTTTGTTATCGACTCTCTTAGACAATAAGAAGGCACAC
GATGGCGCTATGGCCCTGTGCTGCCTGACAACACGCTCCGCCGGTGCTGA
CCCACTTCCTGTCTCCACGCCACCTTACTCCTCGTCTTGGGCCTCTTCTC
TCTTAGCAGCGAATCGCAAACTTCAGAAGCAGGCGGTTGACAAATCATTG
CAACCCTTTCTTACCCAGTACCAGCAAAATTTTCGCCCGTTGCCCATTCA
TCGGTACCCTATCCGTAAGTATAAGGTGACCAATTTACTCTCCAAGGCCT
CGCTCTCTTTTCAAGCACAGCAGCAGCAGTATCAGTACCAGCAGCACCTC
AAAAGAAGCCACCCACCACTGCAGCTCCACTACCCTCCACAATGCCAAAT
GCAGCCGCCGCTTGAGAAGCAGCATGTGAAGGCGTCGACCAAGTGCTTTT
TGATAAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGCACCGCTG
AGTGAAGCCTCCTTGCCTCTGCAACAGATTCGAAATGGTGTCATGGGTGT
TTCGGTGGGACTGCTGCCTGGCAGATGCTCCAAGATCATGAGAAAGTACC
TTCCGAGCGCGGAAAAGCAGCGACGAGCGTCGAAAGAGGACTTGTCGGGT
CTAACTGCGGAGGAGAGAGTACAGCGACGCAAGATACGTGCTCGCATGTA
CAACCGCATGTCTCGCCACCGCCGCAATCAGCTGCATGGTGAGCTGCGCA
GCGACGTGAGTCGCATGCTGATCTACAAGAATATTGTCGATGGTGCGCCA
GACATGATATGTGTCATTTCCCCCGACATTCAGAGCCGGGTGCTATACAT
CAACAAGGCCGCTCGATGTGTCCTCCATACTGACCCCGCGCAGCTGGTGG
GGTCCAGCTTCTGGGACATCGTCCACACGGAAGATAAAATGGCTCTATTC
AGGGCTCTCACCACCGTCACTATATTCAAGTCGGCCGGAAAAGTGGAAAG
GCTACGCTGTCGTGTCGTCACCAACAACCCCGGTGAATATGTGTCTGTCC
GGATGACGCTCGCGAATGGAATGCAGGGCATTGTCTGCGTTATGTGCCAC
GGAGATTCTCTGTCTGCCATTTCGCGTGTGTTATCTGACGGACGACAGTG
TGTCATATAG
back to top
Synonyms
Publications