NO09G04050, NO09G04050 (gene) Nannochloropsis oceanica

Overview
NameNO09G04050
Unique NameNO09G04050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2037
Alignment locationchr9:1196142..1198178 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1196142..1198178 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR013656PAS_4
Homology
[Close]
BLAST of NO09G04050 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 89.0 bits (219), Expect = 3.900e-14
Identity = 58/178 (32.58%), Postives = 90/178 (50.56%), Query Frame = 0 
Query:  244 RRASKEDLSRLTEEERVERRKIRARMYNRMSRHRRNQLHSQLRKDVSRMGIYKNIVDDAPDMICVISPDIQSQVLYINNAARCVLHTDPAQLVGSSFWDIIHKKEKMALFRALTTITITKSAGKVERLRCRVVTNN----------------PGIYVSVKMTLANGMQGIVCIMRHED 406
            +RA + DLS  T  E+ ERRK RARMY+   R R+N     LR+ V  + +YK +VD+AP++  V+S D Q++VLY N A        P   VG S W+++H+++K  +  A  +  + K   +V R RCR+ T+                           +  G QG++ ++R ED
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKE--EVGRARCRLGTSKGQGSKEXXXXXXXXXXXXXXXXXXXXVRRGTQGLILVIRRED 453
[Close]
BLAST of NO09G04050 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 78.2 bits (191), Expect = 6.900e-11
Identity = 53/181 (29.28%), Postives = 95/181 (52.49%), Query Frame = 0 
Query:  237 LPSTEKQRRASKEDLSRLTEEERVERRKIRARMYNRMSRHRRNQLHSQLRKDVSRMGIYKNIVDDAPDMICVISPDIQSQVLYINNAARCVLHTDP-----AQLVGSSFWDIIHKKEKMALFRALTTITITKSAGKVERLRCRV----------VTNNPGIYVSVKMTLANGMQGIVCIMR 403
            L +  K+RRA + D S+LT EE+++ +K RAR Y+ M+R R+++    LR +V R+ +YK +V+ APD + ++S D Q ++L+ N  +  +    P       L G   W+ +   +++A+F A+  + + K    V  + C V              P   + V +TL +  QG++ I+R
Sbjct:  319 LTTLGKKRRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHL--VRAVPCTVWLPSGSVPKHDARGPQQSLKVLITLRSSAQGLILIIR 497
The following BLAST results are available for this feature:
BLAST of NO09G04050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23721.13.900e-1432.58conserved unknown protein [Nannochloropsis gaditan... [more]
EWM23655.16.900e-1129.28pas pac sensor hybrid histidine kinase [Nannochlor... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04050.1NO09G04050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659414gene_9673Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04050.1NO09G04050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04050 ID=NO09G04050|Name=NO09G04050|organism=Nannochloropsis oceanica|type=gene|length=2037bp
ATGACATTCGCATCTACCTGCTCTTATACTCCCACCGCTGAGCAGCAGCG
GGACCAGAGCCAGCGCAGCTATCCCCACGGAATGAAGCTGCAACACAACA
ACTCATTGTCTATTCACTTGGACAAGGAAGAGGCACACGGCGGTGCGGGA
GCACGGTGCAGTCTGGCAACACTCTCTGCCACTGCTGACACCCTTCCGAT
TTCCATGCCGCCATACTCCTTGTCTTCTTGGGCCACTTCTCTCTTGGCAG
CGAACCAAGgtacgcttttttaaggtgattggtctccattgccctccagc
ttgcctactatgcctccatacacaattcccccgattcgctgatgacgcca
tcccgctctgaacaagaagctcctttggctgtcgatcatcccgcgcaacg
aatcggactgatgccggcagctaccccatatcttgtacgcacttatatac
atgggtgagtgcatgtacgacagactacgcatgattttttttcatcctca
aaatttatttttccttagcgtgtatgtgttgcgtcctgcatggtgacact
tctacgatattctaagcaaaaaacaagtgcgccccgggacgcacacaaac
gtctacatatgcaccacctacatgcagcgcatctctccgtatgctcactt
aaacatacatccataatccccacatacgcacagTCTTAGAACTTCGAAAG
CAGGCGGTCGACAAACCATTGCAATCCTTTCTAACCCAGCACCAGCAAGA
TTTTCACCCGTCGCCCATTTATCAGCACCCTGTTATAAAGTGTAAGATTG
ATAATGTATTCTCCCAGGCCTTGCCGTCTTTTCAAGTACAGCAACAGCAG
CAGCAGCAGCAGCATCTGAACCGAAATCATCCGCCGCTACAGCTCCACTA
TTTCCTGCAATGCCAAATGCAACCGCCAATAAAGAAGCATCATATGATGG
CGTCAACTGAGTGCTTTTCGATGAGCGAATTTGCTCTCACGGCGCACGTA
GAGGCCAAGATGTACCCACCAATTGCAGCGCTAGGCGAGACCCCCCTGCT
AGTGCAAGAGATTCGAGCAGGTGTAATGGGTGCTTCGGTGGGACTGCTGC
CTGGCAGATGCTCCAAGATCATGAAAAAATACCTTCCGgtaagaaacatg
gaatcttttgtatagcctcttttggaaactcactatttgtccccatccac
tcatctttctttgcaacagAGCACTGAAAAGCAGCGACGAGCGTCAAAAG
AGGACTTGTCGAGATTAACGGAGGAGGAGAGAGTAGAGCGACGCAAGATA
CGTGCTCGCATGTACAATCGCATGTCTCGCCACCGCCGCAATCAGCTGCA
TAGTCAATTGCGCAAGGACGTGAGTCGCATGGGAATCTACAAGAATATTG
TCGATGATGCGCCAGACATGATATGTGTCATTTCCCCAGATATTCAGAGC
CAGGTGCTATACATCAACAATGCCGCTCGATGCGTCCTCCATACTGACCC
CGCGCAGCTGGTGGGGTCCAGCTTCTGGGACATCATCCACAAAAAAGAAA
AGATGGCGCTGTTCAGGGCTCTCACAACCATCACCATCACCAAGTCGGCC
GGGAAAGTGGAAAGGCTACGCTGTCGTGTAGTCACCAACAACCCCGGTAT
CTATGTGTCTGTCAAGATGACGCTAGCAAATGGGATGCAGGGCATTGTCT
GTATTATGCGTCATGAAGATTCGAACAATCCTGCCATTTTGCGCGTGTCG
CCTAATGAAAGGCCGTGAATCATATGGAAGCAAGAAGAGGGTGATGAGGG
AGTGAAGAAAGACACACACAGCGAGAAGGGCGAGTAGGGCAGAGAGACTT
GAAGAAGAGATCCACACACATCAATCCTGTCCCCCTGTAAGATTTTTGCA
TGATGAGAGGTCAGACTAATCCCTCCCCCCTTCCCCATCTATAGTGAGGG
ACTTTGAGACAAGTAAGAGGCGTGGCCGACGGAATTGAAGAAAAAAGGAA
AATACCATTTCTTGTTGTGGATTTCGAACGCTTTTTC
back to top

protein sequence of NO09G04050.1

>NO09G04050.1-protein ID=NO09G04050.1-protein|Name=NO09G04050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MTFASTCSYTPTAEQQRDQSQRSYPHGMKLQHNNSLSIHLDKEEAHGGAG
ARCSLATLSATADTLPISMPPYSLSSWATSLLAANQVLELRKQAVDKPLQ
SFLTQHQQDFHPSPIYQHPVIKCKIDNVFSQALPSFQVQQQQQQQQHLNR
NHPPLQLHYFLQCQMQPPIKKHHMMASTECFSMSEFALTAHVEAKMYPPI
AALGETPLLVQEIRAGVMGASVGLLPGRCSKIMKKYLPSTEKQRRASKED
LSRLTEEERVERRKIRARMYNRMSRHRRNQLHSQLRKDVSRMGIYKNIVD
DAPDMICVISPDIQSQVLYINNAARCVLHTDPAQLVGSSFWDIIHKKEKM
ALFRALTTITITKSAGKVERLRCRVVTNNPGIYVSVKMTLANGMQGIVCI
MRHEDSNNPAILRVSPNERP*
back to top
Synonyms
Publications