NO09G04050.1, NO09G04050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04050.1
Unique NameNO09G04050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1532
Alignment locationchr9:1196142..1198178 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1196142..1198178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G04050.1 vs.
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 2.700e-15
Identity = 60/178 (33.71%), Postives = 94/178 (52.81%), Query Frame = 0 
Query:  244 RRASKEDLSRLTEEERVERRKIRARMYNRMSRHRRNQLHSQLRKDVSRMGIYKNIVDDAPDMICVISPDIQSQVLYINNAARCVLHTDPAQLVGSSFWDIIHKKEKMALFRALTTITITKSAGKVERLRCRVVTNN----------------PGIYVSVKMTLANGMQGIVCIMRHED 406
            +RA + DLS  T  E+ ERRK RARMY+   R R+N     LR+ V  + +YK +VD+AP++  V+S D Q++VLY N A        P   VG S W+++H+++K  +  A  +  + K   +V R RCR+ T+                     V V +++  G QG++ ++R ED
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKE--EVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRED 453
The following BLAST results are available for this feature:
BLAST of NO09G04050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400SequenceEWM23721.1
Match NameE-valueIdentityDescription
EWM23721.12.700e-1533.71conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04050NO09G04050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04050.1NO09G04050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04050.1.cds1NO09G04050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04050.1.cds2NO09G04050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04050.1.cds3NO09G04050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04050.1 ID=NO09G04050.1|Name=NO09G04050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp
ATGACATTCGCATCTACCTGCTCTTATACTCCCACCGCTGAGCAGCAGCG
GGACCAGAGCCAGCGCAGCTATCCCCACGGAATGAAGCTGCAACACAACA
ACTCATTGTCTATTCACTTGGACAAGGAAGAGGCACACGGCGGTGCGGGA
GCACGGTGCAGTCTGGCAACACTCTCTGCCACTGCTGACACCCTTCCGAT
TTCCATGCCGCCATACTCCTTGTCTTCTTGGGCCACTTCTCTCTTGGCAG
CGAACCAAGTCTTAGAACTTCGAAAGCAGGCGGTCGACAAACCATTGCAA
TCCTTTCTAACCCAGCACCAGCAAGATTTTCACCCGTCGCCCATTTATCA
GCACCCTGTTATAAAGTGTAAGATTGATAATGTATTCTCCCAGGCCTTGC
CGTCTTTTCAAGTACAGCAACAGCAGCAGCAGCAGCAGCATCTGAACCGA
AATCATCCGCCGCTACAGCTCCACTATTTCCTGCAATGCCAAATGCAACC
GCCAATAAAGAAGCATCATATGATGGCGTCAACTGAGTGCTTTTCGATGA
GCGAATTTGCTCTCACGGCGCACGTAGAGGCCAAGATGTACCCACCAATT
GCAGCGCTAGGCGAGACCCCCCTGCTAGTGCAAGAGATTCGAGCAGGTGT
AATGGGTGCTTCGGTGGGACTGCTGCCTGGCAGATGCTCCAAGATCATGA
AAAAATACCTTCCGAGCACTGAAAAGCAGCGACGAGCGTCAAAAGAGGAC
TTGTCGAGATTAACGGAGGAGGAGAGAGTAGAGCGACGCAAGATACGTGC
TCGCATGTACAATCGCATGTCTCGCCACCGCCGCAATCAGCTGCATAGTC
AATTGCGCAAGGACGTGAGTCGCATGGGAATCTACAAGAATATTGTCGAT
GATGCGCCAGACATGATATGTGTCATTTCCCCAGATATTCAGAGCCAGGT
GCTATACATCAACAATGCCGCTCGATGCGTCCTCCATACTGACCCCGCGC
AGCTGGTGGGGTCCAGCTTCTGGGACATCATCCACAAAAAAGAAAAGATG
GCGCTGTTCAGGGCTCTCACAACCATCACCATCACCAAGTCGGCCGGGAA
AGTGGAAAGGCTACGCTGTCGTGTAGTCACCAACAACCCCGGTATCTATG
TGTCTGTCAAGATGACGCTAGCAAATGGGATGCAGGGCATTGTCTGTATT
ATGCGTCATGAAGATTCGAACAATCCTGCCATTTTGCGCGTGTCGCCTAA
TGAAAGGCCGTGAATCATATGGAAGCAAGAAGAGGGTGATGAGGGAGTGA
AGAAAGACACACACAGCGAGAAGGGCGAGTAGGGCAGAGAGACTTGAAGA
AGAGATCCACACACATCAATCCTGTCCCCCTGTAAGATTTTTGCATGATG
AGAGGTCAGACTAATCCCTCCCCCCTTCCCCATCTATAGTGAGGGACTTT
GAGACAAGTAAGAGGCGTGGCCGACGGAATTGAAGAAAAAAGGAAAATAC
CATTTCTTGTTGTGGATTTCGAACGCTTTTTC
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protein sequence of NO09G04050.1

>NO09G04050.1-protein ID=NO09G04050.1-protein|Name=NO09G04050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MTFASTCSYTPTAEQQRDQSQRSYPHGMKLQHNNSLSIHLDKEEAHGGAG
ARCSLATLSATADTLPISMPPYSLSSWATSLLAANQVLELRKQAVDKPLQ
SFLTQHQQDFHPSPIYQHPVIKCKIDNVFSQALPSFQVQQQQQQQQHLNR
NHPPLQLHYFLQCQMQPPIKKHHMMASTECFSMSEFALTAHVEAKMYPPI
AALGETPLLVQEIRAGVMGASVGLLPGRCSKIMKKYLPSTEKQRRASKED
LSRLTEEERVERRKIRARMYNRMSRHRRNQLHSQLRKDVSRMGIYKNIVD
DAPDMICVISPDIQSQVLYINNAARCVLHTDPAQLVGSSFWDIIHKKEKM
ALFRALTTITITKSAGKVERLRCRVVTNNPGIYVSVKMTLANGMQGIVCI
MRHEDSNNPAILRVSPNERP*
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mRNA from alignment at chr9:1196142..1198178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04050.1 ID=NO09G04050.1|Name=NO09G04050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2037bp|location=Sequence derived from alignment at chr9:1196142..1198178+ (Nannochloropsis oceanica)
ATGACATTCGCATCTACCTGCTCTTATACTCCCACCGCTGAGCAGCAGCG
GGACCAGAGCCAGCGCAGCTATCCCCACGGAATGAAGCTGCAACACAACA
ACTCATTGTCTATTCACTTGGACAAGGAAGAGGCACACGGCGGTGCGGGA
GCACGGTGCAGTCTGGCAACACTCTCTGCCACTGCTGACACCCTTCCGAT
TTCCATGCCGCCATACTCCTTGTCTTCTTGGGCCACTTCTCTCTTGGCAG
CGAACCAAGGTACGCTTTTTTAAGGTGATTGGTCTCCATTGCCCTCCAGC
TTGCCTACTATGCCTCCATACACAATTCCCCCGATTCGCTGATGACGCCA
TCCCGCTCTGAACAAGAAGCTCCTTTGGCTGTCGATCATCCCGCGCAACG
AATCGGACTGATGCCGGCAGCTACCCCATATCTTGTACGCACTTATATAC
ATGGGTGAGTGCATGTACGACAGACTACGCATGATTTTTTTTCATCCTCA
AAATTTATTTTTCCTTAGCGTGTATGTGTTGCGTCCTGCATGGTGACACT
TCTACGATATTCTAAGCAAAAAACAAGTGCGCCCCGGGACGCACACAAAC
GTCTACATATGCACCACCTACATGCAGCGCATCTCTCCGTATGCTCACTT
AAACATACATCCATAATCCCCACATACGCACAGTCTTAGAACTTCGAAAG
CAGGCGGTCGACAAACCATTGCAATCCTTTCTAACCCAGCACCAGCAAGA
TTTTCACCCGTCGCCCATTTATCAGCACCCTGTTATAAAGTGTAAGATTG
ATAATGTATTCTCCCAGGCCTTGCCGTCTTTTCAAGTACAGCAACAGCAG
CAGCAGCAGCAGCATCTGAACCGAAATCATCCGCCGCTACAGCTCCACTA
TTTCCTGCAATGCCAAATGCAACCGCCAATAAAGAAGCATCATATGATGG
CGTCAACTGAGTGCTTTTCGATGAGCGAATTTGCTCTCACGGCGCACGTA
GAGGCCAAGATGTACCCACCAATTGCAGCGCTAGGCGAGACCCCCCTGCT
AGTGCAAGAGATTCGAGCAGGTGTAATGGGTGCTTCGGTGGGACTGCTGC
CTGGCAGATGCTCCAAGATCATGAAAAAATACCTTCCGGTAAGAAACATG
GAATCTTTTGTATAGCCTCTTTTGGAAACTCACTATTTGTCCCCATCCAC
TCATCTTTCTTTGCAACAGAGCACTGAAAAGCAGCGACGAGCGTCAAAAG
AGGACTTGTCGAGATTAACGGAGGAGGAGAGAGTAGAGCGACGCAAGATA
CGTGCTCGCATGTACAATCGCATGTCTCGCCACCGCCGCAATCAGCTGCA
TAGTCAATTGCGCAAGGACGTGAGTCGCATGGGAATCTACAAGAATATTG
TCGATGATGCGCCAGACATGATATGTGTCATTTCCCCAGATATTCAGAGC
CAGGTGCTATACATCAACAATGCCGCTCGATGCGTCCTCCATACTGACCC
CGCGCAGCTGGTGGGGTCCAGCTTCTGGGACATCATCCACAAAAAAGAAA
AGATGGCGCTGTTCAGGGCTCTCACAACCATCACCATCACCAAGTCGGCC
GGGAAAGTGGAAAGGCTACGCTGTCGTGTAGTCACCAACAACCCCGGTAT
CTATGTGTCTGTCAAGATGACGCTAGCAAATGGGATGCAGGGCATTGTCT
GTATTATGCGTCATGAAGATTCGAACAATCCTGCCATTTTGCGCGTGTCG
CCTAATGAAAGGCCGTGAATCATATGGAAGCAAGAAGAGGGTGATGAGGG
AGTGAAGAAAGACACACACAGCGAGAAGGGCGAGTAGGGCAGAGAGACTT
GAAGAAGAGATCCACACACATCAATCCTGTCCCCCTGTAAGATTTTTGCA
TGATGAGAGGTCAGACTAATCCCTCCCCCCTTCCCCATCTATAGTGAGGG
ACTTTGAGACAAGTAAGAGGCGTGGCCGACGGAATTGAAGAAAAAAGGAA
AATACCATTTCTTGTTGTGGATTTCGAACGCTTTTTC
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Coding sequence (CDS) from alignment at chr9:1196142..1198178+

>NO09G04050.1 ID=NO09G04050.1|Name=NO09G04050.1|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at chr9:1196142..1198178+ (Nannochloropsis oceanica)
ATGACATTCGCATCTACCTGCTCTTATACTCCCACCGCTGAGCAGCAGCG
GGACCAGAGCCAGCGCAGCTATCCCCACGGAATGAAGCTGCAACACAACA
ACTCATTGTCTATTCACTTGGACAAGGAAGAGGCACACGGCGGTGCGGGA
GCACGGTGCAGTCTGGCAACACTCTCTGCCACTGCTGACACCCTTCCGAT
TTCCATGCCGCCATACTCCTTGTCTTCTTGGGCCACTTCTCTCTTGGCAG
CGAACCAAGTCTTAGAACTTCGAAAGCAGGCGGTCGACAAACCATTGCAA
TCCTTTCTAACCCAGCACCAGCAAGATTTTCACCCGTCGCCCATTTATCA
GCACCCTGTTATAAAGTGTAAGATTGATAATGTATTCTCCCAGGCCTTGC
CGTCTTTTCAAGTACAGCAACAGCAGCAGCAGCAGCAGCATCTGAACCGA
AATCATCCGCCGCTACAGCTCCACTATTTCCTGCAATGCCAAATGCAACC
GCCAATAAAGAAGCATCATATGATGGCGTCAACTGAGTGCTTTTCGATGA
GCGAATTTGCTCTCACGGCGCACGTAGAGGCCAAGATGTACCCACCAATT
GCAGCGCTAGGCGAGACCCCCCTGCTAGTGCAAGAGATTCGAGCAGGTGT
AATGGGTGCTTCGGTGGGACTGCTGCCTGGCAGATGCTCCAAGATCATGA
AAAAATACCTTCCGAGCACTGAAAAGCAGCGACGAGCGTCAAAAGAGGAC
TTGTCGAGATTAACGGAGGAGGAGAGAGTAGAGCGACGCAAGATACGTGC
TCGCATGTACAATCGCATGTCTCGCCACCGCCGCAATCAGCTGCATAGTC
AATTGCGCAAGGACGTGAGTCGCATGGGAATCTACAAGAATATTGTCGAT
GATGCGCCAGACATGATATGTGTCATTTCCCCAGATATTCAGAGCCAGGT
GCTATACATCAACAATGCCGCTCGATGCGTCCTCCATACTGACCCCGCGC
AGCTGGTGGGGTCCAGCTTCTGGGACATCATCCACAAAAAAGAAAAGATG
GCGCTGTTCAGGGCTCTCACAACCATCACCATCACCAAGTCGGCCGGGAA
AGTGGAAAGGCTACGCTGTCGTGTAGTCACCAACAACCCCGGTATCTATG
TGTCTGTCAAGATGACGCTAGCAAATGGGATGCAGGGCATTGTCTGTATT
ATGCGTCATGAAGATTCGAACAATCCTGCCATTTTGCGCGTGTCGCCTAA
TGAAAGGCCGTGA
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Synonyms
Publications