NO09G03970, NO09G03970 (gene) Nannochloropsis oceanica

Overview
NameNO09G03970
Unique NameNO09G03970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2716
Alignment locationchr9:1163350..1166065 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1163350..1166065 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO09G03970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL117nonsL117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006222NSK006222Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03970.1NO09G03970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03970.1NO09G03970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03970 ID=NO09G03970|Name=NO09G03970|organism=Nannochloropsis oceanica|type=gene|length=2716bp
GTAGCGACGTGCGGGCTCGGTCTGGTGTGCGTGAAGGGAGGGAGGGAGAG
TAAGCATTGCTCTTCTTCGAGATTGACGTGCCACAAGGTGTGGAGGTGTC
ACAAGGTGTGGAGGTGTCAAGCTGAGTGACTGTGTGATGTGAGTTGGTAG
TGGGGCGGTGCCTGCGGGCCAGGGGGGAGAGGGTGGTCGGTGTGTGCCTG
CTGGCCGCTCCAACTCGCCGACTGATTTTTGGGCGAGGCTCAGCGACGGC
AGCAAGCACCGACCAGCAGTATGTTGTCTGTGTAGCGTGCGTGTATATTG
AATTGTGTGCAAGTGTGGGCATGTGTGTGTGATGAAGGGAGGAGGAGGAG
CATCATCAGCGGGCTCTCTCTCCTAAGGAGCTCGCATGCAAGACACACAG
CAAAGACAGCAGACGCGCGGACAAAGCAACAACTTGAAGGAGGTTGACTG
TGTACGCTCCCTGCACGTCTTGAGAAAACAAGCTCCCTTTCTCCACACAC
CCTCCATCGCTCCTATGCGCTCTCCAGCTGTCTAGCTAGCTCGACTTTGA
TTATTTTTGTCCAGCCTCGTCATTGGCGTCCTTCCTCATCCTTCCTCCTC
ATTCCTCCTTCGTCTCCTCTCAACTTCCGCCAAGCACAGCTCACCAGCAC
GCAGCTACCATGCACCCCTCTTCCTTTTCGCAGCAGCCGGCTTTTGACTC
TCAGGTAATGTTTGAAAGCTCTCAATGCGCCCAGAACGAGTCCCCTACTC
CTGCTTCCCAGCAACATTGGCGGCAGAATTCGCAGCAGCCTCAACCGCAG
CCGTGCCGGTGGCCAGGCCGCTACCTCAAGAAGCGTCCGTCTCAAGGACT
TGACGCGCGCAATGACCATGAAGCGGATTGGCAAGCTCACCGCCGGCCCC
ACGTCCTTTGCCTTGCTGCCTTGTCCTCTCTTAACCCCCGCGTCGATGTT
ACGTTTGAAGTGGACCCTGCTGCGGTGCCCAAGAAGCGAGTCCATCAGgt
acagaggtgaagaagatcatgggatagagtaggaaggagccaaactgagg
aggaaggaaggaagaaaacggggagaagagctgaggaaaagggaaggaaa
gattgggcacgaccctcgctcatcatgtcatgcttactctctctccctcc
cttcccctccccttgcagGTGGGTTTTCCTCTTTTCTTAGACGACATCTC
AGTCCTGCGCTACATTCGCCATCCATCCGCCCGCCTCCTTTTTGACTCGC
GGGATCTTCACCAGGGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGA
AGAGGTGAAGGAGGAAGAGGAGAAGGAGGAGGAGAAGGAGGAGGAGGAGA
AGGAGGAGGAGGAGGAAGAGAAGGAGGAAAAGGAGAAGGAGGAGGAGGAG
AAGGAGGAGGAGAAGGAGGGGGAGGAGAAGGAGGAGGGTCGTTGGTCGCC
TTTGACTTTGCCGATGGGGAGGGTGCCCTTCGCATGTGCCTTCGCCTGGT
CCAAAGGGCACGCCCTGGCCTCTCTATTCAGGAAGGGCTCCCTCCCCCAC
TTCCTTCTTCGAATCCTCCTGCTGCTCTTCTTATGCCGCCGCCTCTCCCC
TCTTCTCCGTTTCCTCCTCCTCTTCCTACACTTTCGCTGCCTACCCCTTC
ATCCTCGTCTTCCATGCCTCTTGTCCAACCTTTTCCCTTCGCAGCTACTC
CAACTGCAATGACGCAGGCTCCGATTAACACCCCTCCGCCGTTTACCCGT
CCTCCCCCCCTTCCTTCTACCTTCCTTTCGAGCCTTGCTCACCAGACTTT
GACGAAAGGCCCAGCCGCTGTGCCACACTTTATCTCCTCCTCCTCCTCGA
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTACCACTACT
ACTACTCCTGCTGGTGGTGATATGGTAGTGATTGGAGAAGGAAGCGGGGG
AGGAGAAGGGGGGAGAGCTGTGGCCTCAGCACCAGCACCAGGACCAGCCA
TCGCGCCACCCCCGAAGCAAAAACGACGCAAGCCCACTGCGGTAGCAACG
GCAGCAGCTTTAGTCACAGGGACCGCAGCATCAGTGACAGGACCATCAAT
ATCAACAGCAGCAGCACAAGTAGCACTGACAGCACCGGTGAAAGAACGGG
CACCGAGGGAAAAGGGGGGAGGAAAATCTCCGGCTGCTGCCGCTGCTACT
GCTCCTGCTATGCCTACTGCCACCAATGCTGCAGTAGCGAGCCAACCTTC
AGCCAGTGCCTCTTTGCTTTACCTCTTCCAGCACGCCAAGCCTATGGTGC
AGCAACAAATGATGAGgtaggcagcaaggaagggagaaagaaaagtgaga
aaggtgtgggaaagtgatcgggaaaaagatgaagtactcacacaccatac
aaaaacacacaaacagCACGCTCTCGGACCCGCATTTCCCGGCATTGGTG
GGTGAGATTGAGCAGATACTCTCGCAGCATATGTGGTTGTTCTTCCCCAC
GATTACCGATGAGGACTAAGTTAGAGAGATGAAAGAGAAACTTGCGTGCA
AGATGTGTTTTCGTTCCCCCTTTCTCCCGGCAGAGCGCATATGTGGTCGG
CGGTTTATTTCAGCATGAAGAAAGAATGCGGGATTACGTTGTATGTCGAT
AAGACTTAAATAGTCATAGACAAGAAATCGAAGATACTGACGTAAAAACG
AAAACACCCGTGCGAG
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protein sequence of NO09G03970.1

>NO09G03970.1-protein ID=NO09G03970.1-protein|Name=NO09G03970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MHPSSFSQQPAFDSQVMFESSQCAQNESPTPASQQHWRQNSQQPQPQPCR
WPGRYLKKRPSQGLDARNDHEADWQAHRRPHVLCLAALSSLNPRVDVTFE
VDPAAVPKKRVHQVGFPLFLDDISVLRYIRHPSARLLFDSRDLHQGEGGG
GGGGEGGRGEGGRGEGGGEGGGGEGGGGGREGGKGEGGGGEGGGEGGGGE
GGGSLVAFDFADGEGALRMCLRLVQRARPGLSIQEGLPPPLPSSNPPAAL
LMPPPLPSSPFPPPLPTLSLPTPSSSSSMPLVQPFPFAATPTAMTQAPIN
TPPPFTRPPPLPSTFLSSLAHQTLTKGPAAVPHFISSSSSTAAAAAAAAA
AAAATTTTTPAGGDMVVIGEGSGGGEGGRAVASAPAPGPAIAPPPKQKRR
KPTAVATAAALVTGTAASVTGPSISTAAAQVALTAPVKERAPREKGGGKS
PAAAAATAPAMPTATNAAVASQPSASASLLYLFQHAKPMVQQQMMSTLSD
PHFPALVGEIEQILSQHMWLFFPTITDED*
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Synonyms
Publications