NO09G03970.1, NO09G03970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03970.1
Unique NameNO09G03970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2446
Alignment locationchr9:1163350..1166065 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1163350..1166065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO09G03970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03970NO09G03970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03970.1NO09G03970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03970.1.cds1NO09G03970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03970.1.cds2NO09G03970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03970.1.cds3NO09G03970.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03970.1 ID=NO09G03970.1|Name=NO09G03970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2446bp
GTAGCGACGTGCGGGCTCGGTCTGGTGTGCGTGAAGGGAGGGAGGGAGAG
TAAGCATTGCTCTTCTTCGAGATTGACGTGCCACAAGGTGTGGAGGTGTC
ACAAGGTGTGGAGGTGTCAAGCTGAGTGACTGTGTGATGTGAGTTGGTAG
TGGGGCGGTGCCTGCGGGCCAGGGGGGAGAGGGTGGTCGGTGTGTGCCTG
CTGGCCGCTCCAACTCGCCGACTGATTTTTGGGCGAGGCTCAGCGACGGC
AGCAAGCACCGACCAGCAGTATGTTGTCTGTGTAGCGTGCGTGTATATTG
AATTGTGTGCAAGTGTGGGCATGTGTGTGTGATGAAGGGAGGAGGAGGAG
CATCATCAGCGGGCTCTCTCTCCTAAGGAGCTCGCATGCAAGACACACAG
CAAAGACAGCAGACGCGCGGACAAAGCAACAACTTGAAGGAGGTTGACTG
TGTACGCTCCCTGCACGTCTTGAGAAAACAAGCTCCCTTTCTCCACACAC
CCTCCATCGCTCCTATGCGCTCTCCAGCTGTCTAGCTAGCTCGACTTTGA
TTATTTTTGTCCAGCCTCGTCATTGGCGTCCTTCCTCATCCTTCCTCCTC
ATTCCTCCTTCGTCTCCTCTCAACTTCCGCCAAGCACAGCTCACCAGCAC
GCAGCTACCATGCACCCCTCTTCCTTTTCGCAGCAGCCGGCTTTTGACTC
TCAGGTAATGTTTGAAAGCTCTCAATGCGCCCAGAACGAGTCCCCTACTC
CTGCTTCCCAGCAACATTGGCGGCAGAATTCGCAGCAGCCTCAACCGCAG
CCGTGCCGGTGGCCAGGCCGCTACCTCAAGAAGCGTCCGTCTCAAGGACT
TGACGCGCGCAATGACCATGAAGCGGATTGGCAAGCTCACCGCCGGCCCC
ACGTCCTTTGCCTTGCTGCCTTGTCCTCTCTTAACCCCCGCGTCGATGTT
ACGTTTGAAGTGGACCCTGCTGCGGTGCCCAAGAAGCGAGTCCATCAGGT
GGGTTTTCCTCTTTTCTTAGACGACATCTCAGTCCTGCGCTACATTCGCC
ATCCATCCGCCCGCCTCCTTTTTGACTCGCGGGATCTTCACCAGGGAGAA
GGAGGAGGAGGAGGAGGAGGAGAAGGAGGAAGAGGTGAAGGAGGAAGAGG
AGAAGGAGGAGGAGAAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAAGAG
AAGGAGGAAAAGGAGAAGGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGG
GGAGGAGAAGGAGGAGGGTCGTTGGTCGCCTTTGACTTTGCCGATGGGGA
GGGTGCCCTTCGCATGTGCCTTCGCCTGGTCCAAAGGGCACGCCCTGGCC
TCTCTATTCAGGAAGGGCTCCCTCCCCCACTTCCTTCTTCGAATCCTCCT
GCTGCTCTTCTTATGCCGCCGCCTCTCCCCTCTTCTCCGTTTCCTCCTCC
TCTTCCTACACTTTCGCTGCCTACCCCTTCATCCTCGTCTTCCATGCCTC
TTGTCCAACCTTTTCCCTTCGCAGCTACTCCAACTGCAATGACGCAGGCT
CCGATTAACACCCCTCCGCCGTTTACCCGTCCTCCCCCCCTTCCTTCTAC
CTTCCTTTCGAGCCTTGCTCACCAGACTTTGACGAAAGGCCCAGCCGCTG
TGCCACACTTTATCTCCTCCTCCTCCTCGACTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCCGCTGCTGCTACCACTACTACTACTCCTGCTGGTGGTGA
TATGGTAGTGATTGGAGAAGGAAGCGGGGGAGGAGAAGGGGGGAGAGCTG
TGGCCTCAGCACCAGCACCAGGACCAGCCATCGCGCCACCCCCGAAGCAA
AAACGACGCAAGCCCACTGCGGTAGCAACGGCAGCAGCTTTAGTCACAGG
GACCGCAGCATCAGTGACAGGACCATCAATATCAACAGCAGCAGCACAAG
TAGCACTGACAGCACCGGTGAAAGAACGGGCACCGAGGGAAAAGGGGGGA
GGAAAATCTCCGGCTGCTGCCGCTGCTACTGCTCCTGCTATGCCTACTGC
CACCAATGCTGCAGTAGCGAGCCAACCTTCAGCCAGTGCCTCTTTGCTTT
ACCTCTTCCAGCACGCCAAGCCTATGGTGCAGCAACAAATGATGAGCACG
CTCTCGGACCCGCATTTCCCGGCATTGGTGGGTGAGATTGAGCAGATACT
CTCGCAGCATATGTGGTTGTTCTTCCCCACGATTACCGATGAGGACTAAG
TTAGAGAGATGAAAGAGAAACTTGCGTGCAAGATGTGTTTTCGTTCCCCC
TTTCTCCCGGCAGAGCGCATATGTGGTCGGCGGTTTATTTCAGCATGAAG
AAAGAATGCGGGATTACGTTGTATGTCGATAAGACTTAAATAGTCATAGA
CAAGAAATCGAAGATACTGACGTAAAAACGAAAACACCCGTGCGAG
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protein sequence of NO09G03970.1

>NO09G03970.1-protein ID=NO09G03970.1-protein|Name=NO09G03970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MHPSSFSQQPAFDSQVMFESSQCAQNESPTPASQQHWRQNSQQPQPQPCR
WPGRYLKKRPSQGLDARNDHEADWQAHRRPHVLCLAALSSLNPRVDVTFE
VDPAAVPKKRVHQVGFPLFLDDISVLRYIRHPSARLLFDSRDLHQGEGGG
GGGGEGGRGEGGRGEGGGEGGGGEGGGGGREGGKGEGGGGEGGGEGGGGE
GGGSLVAFDFADGEGALRMCLRLVQRARPGLSIQEGLPPPLPSSNPPAAL
LMPPPLPSSPFPPPLPTLSLPTPSSSSSMPLVQPFPFAATPTAMTQAPIN
TPPPFTRPPPLPSTFLSSLAHQTLTKGPAAVPHFISSSSSTAAAAAAAAA
AAAATTTTTPAGGDMVVIGEGSGGGEGGRAVASAPAPGPAIAPPPKQKRR
KPTAVATAAALVTGTAASVTGPSISTAAAQVALTAPVKERAPREKGGGKS
PAAAAATAPAMPTATNAAVASQPSASASLLYLFQHAKPMVQQQMMSTLSD
PHFPALVGEIEQILSQHMWLFFPTITDED*
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mRNA from alignment at chr9:1163350..1166065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03970.1 ID=NO09G03970.1|Name=NO09G03970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2716bp|location=Sequence derived from alignment at chr9:1163350..1166065- (Nannochloropsis oceanica)
GTAGCGACGTGCGGGCTCGGTCTGGTGTGCGTGAAGGGAGGGAGGGAGAG
TAAGCATTGCTCTTCTTCGAGATTGACGTGCCACAAGGTGTGGAGGTGTC
ACAAGGTGTGGAGGTGTCAAGCTGAGTGACTGTGTGATGTGAGTTGGTAG
TGGGGCGGTGCCTGCGGGCCAGGGGGGAGAGGGTGGTCGGTGTGTGCCTG
CTGGCCGCTCCAACTCGCCGACTGATTTTTGGGCGAGGCTCAGCGACGGC
AGCAAGCACCGACCAGCAGTATGTTGTCTGTGTAGCGTGCGTGTATATTG
AATTGTGTGCAAGTGTGGGCATGTGTGTGTGATGAAGGGAGGAGGAGGAG
CATCATCAGCGGGCTCTCTCTCCTAAGGAGCTCGCATGCAAGACACACAG
CAAAGACAGCAGACGCGCGGACAAAGCAACAACTTGAAGGAGGTTGACTG
TGTACGCTCCCTGCACGTCTTGAGAAAACAAGCTCCCTTTCTCCACACAC
CCTCCATCGCTCCTATGCGCTCTCCAGCTGTCTAGCTAGCTCGACTTTGA
TTATTTTTGTCCAGCCTCGTCATTGGCGTCCTTCCTCATCCTTCCTCCTC
ATTCCTCCTTCGTCTCCTCTCAACTTCCGCCAAGCACAGCTCACCAGCAC
GCAGCTACCATGCACCCCTCTTCCTTTTCGCAGCAGCCGGCTTTTGACTC
TCAGGTAATGTTTGAAAGCTCTCAATGCGCCCAGAACGAGTCCCCTACTC
CTGCTTCCCAGCAACATTGGCGGCAGAATTCGCAGCAGCCTCAACCGCAG
CCGTGCCGGTGGCCAGGCCGCTACCTCAAGAAGCGTCCGTCTCAAGGACT
TGACGCGCGCAATGACCATGAAGCGGATTGGCAAGCTCACCGCCGGCCCC
ACGTCCTTTGCCTTGCTGCCTTGTCCTCTCTTAACCCCCGCGTCGATGTT
ACGTTTGAAGTGGACCCTGCTGCGGTGCCCAAGAAGCGAGTCCATCAGGT
ACAGAGGTGAAGAAGATCATGGGATAGAGTAGGAAGGAGCCAAACTGAGG
AGGAAGGAAGGAAGAAAACGGGGAGAAGAGCTGAGGAAAAGGGAAGGAAA
GATTGGGCACGACCCTCGCTCATCATGTCATGCTTACTCTCTCTCCCTCC
CTTCCCCTCCCCTTGCAGGTGGGTTTTCCTCTTTTCTTAGACGACATCTC
AGTCCTGCGCTACATTCGCCATCCATCCGCCCGCCTCCTTTTTGACTCGC
GGGATCTTCACCAGGGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGA
AGAGGTGAAGGAGGAAGAGGAGAAGGAGGAGGAGAAGGAGGAGGAGGAGA
AGGAGGAGGAGGAGGAAGAGAAGGAGGAAAAGGAGAAGGAGGAGGAGGAG
AAGGAGGAGGAGAAGGAGGGGGAGGAGAAGGAGGAGGGTCGTTGGTCGCC
TTTGACTTTGCCGATGGGGAGGGTGCCCTTCGCATGTGCCTTCGCCTGGT
CCAAAGGGCACGCCCTGGCCTCTCTATTCAGGAAGGGCTCCCTCCCCCAC
TTCCTTCTTCGAATCCTCCTGCTGCTCTTCTTATGCCGCCGCCTCTCCCC
TCTTCTCCGTTTCCTCCTCCTCTTCCTACACTTTCGCTGCCTACCCCTTC
ATCCTCGTCTTCCATGCCTCTTGTCCAACCTTTTCCCTTCGCAGCTACTC
CAACTGCAATGACGCAGGCTCCGATTAACACCCCTCCGCCGTTTACCCGT
CCTCCCCCCCTTCCTTCTACCTTCCTTTCGAGCCTTGCTCACCAGACTTT
GACGAAAGGCCCAGCCGCTGTGCCACACTTTATCTCCTCCTCCTCCTCGA
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTACCACTACT
ACTACTCCTGCTGGTGGTGATATGGTAGTGATTGGAGAAGGAAGCGGGGG
AGGAGAAGGGGGGAGAGCTGTGGCCTCAGCACCAGCACCAGGACCAGCCA
TCGCGCCACCCCCGAAGCAAAAACGACGCAAGCCCACTGCGGTAGCAACG
GCAGCAGCTTTAGTCACAGGGACCGCAGCATCAGTGACAGGACCATCAAT
ATCAACAGCAGCAGCACAAGTAGCACTGACAGCACCGGTGAAAGAACGGG
CACCGAGGGAAAAGGGGGGAGGAAAATCTCCGGCTGCTGCCGCTGCTACT
GCTCCTGCTATGCCTACTGCCACCAATGCTGCAGTAGCGAGCCAACCTTC
AGCCAGTGCCTCTTTGCTTTACCTCTTCCAGCACGCCAAGCCTATGGTGC
AGCAACAAATGATGAGGTAGGCAGCAAGGAAGGGAGAAAGAAAAGTGAGA
AAGGTGTGGGAAAGTGATCGGGAAAAAGATGAAGTACTCACACACCATAC
AAAAACACACAAACAGCACGCTCTCGGACCCGCATTTCCCGGCATTGGTG
GGTGAGATTGAGCAGATACTCTCGCAGCATATGTGGTTGTTCTTCCCCAC
GATTACCGATGAGGACTAAGTTAGAGAGATGAAAGAGAAACTTGCGTGCA
AGATGTGTTTTCGTTCCCCCTTTCTCCCGGCAGAGCGCATATGTGGTCGG
CGGTTTATTTCAGCATGAAGAAAGAATGCGGGATTACGTTGTATGTCGAT
AAGACTTAAATAGTCATAGACAAGAAATCGAAGATACTGACGTAAAAACG
AAAACACCCGTGCGAG
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Coding sequence (CDS) from alignment at chr9:1163350..1166065-

>NO09G03970.1 ID=NO09G03970.1|Name=NO09G03970.1|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at chr9:1163350..1166065- (Nannochloropsis oceanica)
ATGCACCCCTCTTCCTTTTCGCAGCAGCCGGCTTTTGACTCTCAGGTAAT
GTTTGAAAGCTCTCAATGCGCCCAGAACGAGTCCCCTACTCCTGCTTCCC
AGCAACATTGGCGGCAGAATTCGCAGCAGCCTCAACCGCAGCCGTGCCGG
TGGCCAGGCCGCTACCTCAAGAAGCGTCCGTCTCAAGGACTTGACGCGCG
CAATGACCATGAAGCGGATTGGCAAGCTCACCGCCGGCCCCACGTCCTTT
GCCTTGCTGCCTTGTCCTCTCTTAACCCCCGCGTCGATGTTACGTTTGAA
GTGGACCCTGCTGCGGTGCCCAAGAAGCGAGTCCATCAGGTGGGTTTTCC
TCTTTTCTTAGACGACATCTCAGTCCTGCGCTACATTCGCCATCCATCCG
CCCGCCTCCTTTTTGACTCGCGGGATCTTCACCAGGGAGAAGGAGGAGGA
GGAGGAGGAGGAGAAGGAGGAAGAGGTGAAGGAGGAAGAGGAGAAGGAGG
AGGAGAAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAAGAGAAGGAGGAA
AAGGAGAAGGAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGGGGAGGAGAA
GGAGGAGGGTCGTTGGTCGCCTTTGACTTTGCCGATGGGGAGGGTGCCCT
TCGCATGTGCCTTCGCCTGGTCCAAAGGGCACGCCCTGGCCTCTCTATTC
AGGAAGGGCTCCCTCCCCCACTTCCTTCTTCGAATCCTCCTGCTGCTCTT
CTTATGCCGCCGCCTCTCCCCTCTTCTCCGTTTCCTCCTCCTCTTCCTAC
ACTTTCGCTGCCTACCCCTTCATCCTCGTCTTCCATGCCTCTTGTCCAAC
CTTTTCCCTTCGCAGCTACTCCAACTGCAATGACGCAGGCTCCGATTAAC
ACCCCTCCGCCGTTTACCCGTCCTCCCCCCCTTCCTTCTACCTTCCTTTC
GAGCCTTGCTCACCAGACTTTGACGAAAGGCCCAGCCGCTGTGCCACACT
TTATCTCCTCCTCCTCCTCGACTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCCGCTGCTGCTACCACTACTACTACTCCTGCTGGTGGTGATATGGTAGT
GATTGGAGAAGGAAGCGGGGGAGGAGAAGGGGGGAGAGCTGTGGCCTCAG
CACCAGCACCAGGACCAGCCATCGCGCCACCCCCGAAGCAAAAACGACGC
AAGCCCACTGCGGTAGCAACGGCAGCAGCTTTAGTCACAGGGACCGCAGC
ATCAGTGACAGGACCATCAATATCAACAGCAGCAGCACAAGTAGCACTGA
CAGCACCGGTGAAAGAACGGGCACCGAGGGAAAAGGGGGGAGGAAAATCT
CCGGCTGCTGCCGCTGCTACTGCTCCTGCTATGCCTACTGCCACCAATGC
TGCAGTAGCGAGCCAACCTTCAGCCAGTGCCTCTTTGCTTTACCTCTTCC
AGCACGCCAAGCCTATGGTGCAGCAACAAATGATGAGCACGCTCTCGGAC
CCGCATTTCCCGGCATTGGTGGGTGAGATTGAGCAGATACTCTCGCAGCA
TATGTGGTTGTTCTTCCCCACGATTACCGATGAGGACTAA
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Synonyms
Publications