NO09G03760, NO09G03760 (gene) Nannochloropsis oceanica

Overview
NameNO09G03760
Unique NameNO09G03760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1619
Alignment locationchr9:1081102..1082720 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1081102..1082720 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain_like_cys_pep_sf
IPR028889USP_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO09G03760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03760.1NO09G03760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03760.1NO09G03760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03760 ID=NO09G03760|Name=NO09G03760|organism=Nannochloropsis oceanica|type=gene|length=1619bp
ATGGTGCACGGTGGAGGGGTCCACACCGgtaagccagccccctccctccc
tccctcggttttcgtccgcctgctccactcacgtccctccctccctccct
ccctccctccctccctcccaagGCCACTACTCGGCCTATATCAAGGATAC
GATTCACGCGGGCGGGCGCTGGTTCCTCTTCGATGACGCTCTTGTGCTCC
CCGTCCGACCCGCCACAGTGCTTCGGGCCTGGGGCGGGGAGGGCGGGGGG
GCGGAAGGGGCTGGGAGTAGAGGGAGCGATCCTCTCTTCTCCTCTTTCCC
CTCCTCCTCCTCCTCCTCCTCCTCCTGGCGCAATTCTTCTCATACTCTAT
ACAAAAGTGGGAAGGGCCGGGAAGAGGAGAAGACTTTCCTCTTCCAGCAG
CAGCAGCAGGAGCTTGAAGAGGAGGATGAGTGGTGGAGGGAGGGAGGGCT
GGAGGGAGGGGTGAAGCCCACCTCTTCCTTCTTCCCCAACGCGGTGGCTT
ACATGCTAGTATACAGGAAGATGGAAGCCGTCGGgtagggagggagggag
ggaggcagggagggaagaggtctcgtacatacgcacacacccaccttcct
ccactcacctccgcaccctctatacacaaccacagCAGCTCTCCCTCGGC
CCCTCCCTCCTTCCCGTCCTCCCCTTCCTCCTCCTCCCCTCCTTCACAGA
CTTTGTCGCCTGCAGACGTGGAGTTGTCGATCCCCCTCCCTCCCCACCTC
CTCTCCTGGCTCAAGGAGGAAGAGGCGGAGGAAGCGAGGAAGGAAGAGGC
GCGTCGCCTCCGCTCTCAGCTTGCGTCGGTCCGGGTATTTTGTGGCACTA
TGGAGCCGAAGGAGAGGAGGAAAGAAGGGGTGGAGGTCTCCTTGCCCAAG
ACGGCGACTGTAGCAGAGCTGAAGGAGCTGGCCTGGAGGgtgagcaggga
gagggggagggagggagggagggagggagggaagggaggggggtagtgct
gacatgacactcgattcaatcgtcaaggttgacggaagtaggactggagg
aagggagggagggagggcgggaaaagaggagaaaggtgagcattggcctt
cacaccatcacctctttcaatgcacgtgacagGCGATGGGCCTGGCCCAT
GCCGACCCTCCTGTTGCCCTCCACGACGTCCGCCTCCGCCCTTTCTACCG
TCCTCGTCCCCCCCCTCCTCCACTGCCACCTCCCCCCCTTCCCTTGTCGT
GTCGCACTGGACGAGGGGATGACGCTGAAAGAGTGCGGGCTGAGGACGGG
CTGCGGTTTGTACCTACAAGTCAAGCGCCCCGGTGAAAAGgcaaggaggg
agggagggagggagggagggagggagagacgcaaagtagagaaatagcag
atttactgggcagcctgctgtgaaaattcactaactcccgtcactacccc
ccggcccgactcacctccttcttccctcagTTTACCGTCTACATGAAGCG
CTCGAATCCTCCCTCCACCCCTCCAAAGTCCGAGTACAACCACCTCGCCC
GTCTCTCCCATGCCTCCACCCACCCCGACGGGTACTACTACTCCTCTTTC
CCCTCCCCCAGCCCCAGCT
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protein sequence of NO09G03760.1

>NO09G03760.1-protein ID=NO09G03760.1-protein|Name=NO09G03760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MVHGGGVHTGHYSAYIKDTIHAGGRWFLFDDALVLPVRPATVLRAWGGEG
GGAEGAGSRGSDPLFSSFPSSSSSSSSWRNSSHTLYKSGKGREEEKTFLF
QQQQQELEEEDEWWREGGLEGGVKPTSSFFPNAVAYMLVYRKMEAVGSSP
SAPPSFPSSPSSSSPPSQTLSPADVELSIPLPPHLLSWLKEEEAEEARKE
EARRLRSQLASVRVFCGTMEPKERRKEGVEVSLPKTATVAELKELAWRAM
GLAHADPPVALHDVRLRPFYRPRPPPPPLPPPPLPLSCRTGRGDDAERVR
AEDGLRFVPTSQAPR*
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Synonyms
Publications