NO09G02910, NO09G02910 (gene) Nannochloropsis oceanica

Overview
NameNO09G02910
Unique NameNO09G02910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2062
Alignment locationchr9:855499..857560 -

Link to JBrowse

Properties
Property NameValue
DescriptionZinc/iron permease
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:855499..857560 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
GO:0055085transmembrane transport
GO:0055085transmembrane transport
GO:0030001metal ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0046873metal ion transmembrane transporter activity
GO:0046873metal ion transmembrane transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR003689ZIP
Homology
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BLAST of NO09G02910 vs. NCBI_GenBank
Match: EWM27521.1 (Zinc/iron permease [Nannochloropsis gaditana])

HSP 1 Score: 223.4 bits (568), Expect = 1.500e-54
Identity = 187/482 (38.80%), Postives = 236/482 (48.96%), Query Frame = 0 
Query:    8 MANSSASRHGGGIFVLLNLLLGVLTFVVFLSTRRIILAPFQAILLNALACGILVGAVLGIILPEGFHAQQDGKEGSEASGMPILVGYALQVTLENVGSFFNG--HGHSRDHTVPSKHSPLXXXXXXXXXXXXXXXXXELDGGVEYLGEEGKGKSRGKDVTQQLFSASHISSSTCAGRSITPNREIVIELLSLNGAASPPLSSENPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGSAEGLVDFSSSSSAPVAAITEIKGCCIFQPSFVGLLIHCLADGIAIGASSLGNASLLGAVFLALVIHKLPVAFATGTWVT----------TITXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFWYHALAFASASPFAAFLTR--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGTFLYVSVGHILPELMHSSQMTKGPMGRRWLVLLVVIVGMFAVPLLAGLAPEHG 476
            MA  + S  GG  FV LNL+L  LT  VFLSTRR+ LAP   + LNAL+CGILVGAVLGIILPEGF AQQ G +G EASG+PIL+GYA Q+ L+NVG+      H HS   +   KHSPL                  LD  +      G+ +  G       F +    +S+      +   E ++E+ S+ G   P +      +                                                +G +      S P    +   G    QP+F+GLL+HCLADG+A+GASSLG +SL   V+LAL+IHKLPVAFATGT +           T+               XXXXXXXXXXXXX  F YHALAF+ ASP AA  T   +                            S GTFLYVSVGHI+PEL+HS +  +     R +VLL++I+GMFAVPLLA LAP+HG
Sbjct:    1 MAAGATSGRGG--FVGLNLVLAALTLAVFLSTRRLKLAPSHVVFLNALSCGILVGAVLGIILPEGFEAQQAGGKGREASGIPILIGYAFQLLLDNVGTACRSGHHHHSSVLSGHPKHSPLPATPRDTGEYGMEEDSERLD-SLTVEASTGRAQEGGNG----RFLSDSRRTSSALRSPWSSEDENMVEMTSVEG-VPPGVPPTTRASQAHFPPPSTSAACRGGRQPGRSSNSPLYPRESQRDHYRPSQRTSKARGDGSLPALRGPSGPTLLGSGDGGSP--QPAFLGLLVHCLADGVALGASSLGTSSLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQXXXXXXXXXXXXXXSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELLHSHEHVRNTFVTRAVVLLLLIMGMFAVPLLARLAPDHG 472
The following BLAST results are available for this feature:
BLAST of NO09G02910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27521.11.500e-5438.80Zinc/iron permease [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010824NSK010824Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02910.1NO09G02910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639027gene_4257Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100101g2gene3048Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02910.1NO09G02910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02910 ID=NO09G02910|Name=NO09G02910|organism=Nannochloropsis oceanica|type=gene|length=2062bp
TGCCTTGGCTTCACGCTTGAGAAGGATGTAGCGTGGGAGGAAGCAGGGAA
GACAAGCAAATGGAGTACCCCGAGCAACGGCAACCACACAACAACGGGCT
GTCGTGAAGCCTGGCCAGGGAGGCAGGAGGTCGTGAGACGCCTCTCTCTC
TACCCCAGAGCAGTGAAGAACCAGTGGTAAGGCGTGCGCACATGTGGCTT
TGCAAGGACACCGAGGGCAAAGAAGAACGACGAAGCGCAGCCATAGCCCT
CCACGAGAGACACATCCTCTAAAAGAAGAAACGCACACAGCATACCTCGC
CCAAAATAGCGCCTCTCACATACCACTGCACTCCACATGCCTCAAGCACA
CTCCAACCACACAAATTCGCCTCCGTCCTGTTTTCCCTTCCTGCTTCTCG
TACTCACACCCTACCTAAACATGATTTCCCAGGCCTTCATCATCGCATGC
AACATTCTTGCCCACTTTTTACTGCCCATATCGCACTCACTCGATTATAT
GTGACACTGCTACCTGCGATCCAAAATGATTTGGCACAGGACACTCATGG
CCAATAGCAGCGCAAGCCGCCATGGCGGTGGAATATTTGTCCTACTCAAC
CTGCTGCTGGGCGTGTTGACGTTTGTCGTCTTCTTGAGTACGCGCCGCAT
CATCCTCGCCCCCTTCCAAGCCATCCTCCTGAACGCCCTAGCATGCGGTA
TACTTGTCGGTGCTGTCCTGGGTATAATTTTACCGGAAGGGTTTCATGCA
CAACAAGACGGGAAGGAGGGCTCGGAGGCAAGCGGGATGCCTATATTGGT
CGGATATGCGCTGCAAGTGACCCTCGAGAACGTTGGAAGTTTCTTCAATG
GACATGGCCACTCTCGCGACCACACGGTCCCATCAAAGCATTCGCCTTTG
CCTCATGCGCCTCTTGATGAAGATAGTGACGATGAGGAAGGGGAGGGTGT
GGAGCTGGATGGTGGTGTGGAGTATTTGGGGGAAGAGGGGAAAGGCAAAT
CCCGCGGCAAGGACGTCACCCAGCAGCTTTTCTCCGCTTCGCACATCTCG
TCATCTACGTGTGCGGGCCGCTCCATCACCCCTAACAGAGAGATTGTGAT
TGAGTTATTGAGTTTGAACGGCGCAGCATCTCCACCCCTTTCTTCGGAAA
ATCCGACAGCAGCGGCAACAGCAGCAATACGAGAGGAAAGGGAGCGGATC
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTGTCAGCAACCGGAGCCC
TCACCGGCATAATCTACACCAGCATGCTCATCACCACCTTTCTATCGGGA
GCGCCGAAGGTCTCGTGGACTTCTCCTCTTCCTCCTCCGCCCCCGTCGCC
GCCATAACAGAAATAAAAGGCTGCTGTATTTTCCAACCGAGCTTCGTTGG
TCTCCTTATCCATTGTCTTGCGGACGGCATTGCTATAGGAGCCTCTTCAT
TAGGAAATGCTTCTTTGCTGGGAGCAGTTTTTCTTGCGCTGGTAATACAT
AAGCTGCCGGTTGCCTTTGCAACTGGCACGTGGGTCACCACCATCACAGC
AGCCACAAAACGGCCACCGTACCGTCTGCTGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAAAAAGGGAGATCTGAAGTGTTTTGGTACCACGCC
TTGGCGTTCGCATCGGCTTCACCCTTCGCTGCGTTCCTCACGCGCGTCAT
CCTGCAGCTGCAACGACGACGGCATCAGCAGGACGAGAGCAGCGGCAGCA
GCAATATTTTCGTGGGACAAGTTTTATTGTTTTCCGGCGGAACGTTTCTG
TATGTAAGTGTGGGGCATATATTGCCTGAGTTGATGCATTCGTCGCAGAT
GACGAAAGGCCCGATGGGGAGGAGGTGGCTGGTGTTGTTGGTGGTGATAG
TCGGAATGTTTGCTGTGCCGTTGCTAGCTGGACTGGCGCCAGAGCATGGA
CATTGAGGAAATGTGGATCGAAAGAATGTAGGAAGTGCAGTGTATTTTTT
ATGAATAGATGTAGTAGATGTGTCAGATTGCTGATAAGGAAATGGCCAAA
AAAACTTGGAGA
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protein sequence of NO09G02910.1

>NO09G02910.1-protein ID=NO09G02910.1-protein|Name=NO09G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MIWHRTLMANSSASRHGGGIFVLLNLLLGVLTFVVFLSTRRIILAPFQAI
LLNALACGILVGAVLGIILPEGFHAQQDGKEGSEASGMPILVGYALQVTL
ENVGSFFNGHGHSRDHTVPSKHSPLPHAPLDEDSDDEEGEGVELDGGVEY
LGEEGKGKSRGKDVTQQLFSASHISSSTCAGRSITPNREIVIELLSLNGA
ASPPLSSENPTAAATAAIREERERISSSSSSSSSSSVSNRSPHRHNLHQH
AHHHLSIGSAEGLVDFSSSSSAPVAAITEIKGCCIFQPSFVGLLIHCLAD
GIAIGASSLGNASLLGAVFLALVIHKLPVAFATGTWVTTITAATKRPPYR
LLQQQQQQQQQQQQKGRSEVFWYHALAFASASPFAAFLTRVILQLQRRRH
QQDESSGSSNIFVGQVLLFSGGTFLYVSVGHILPELMHSSQMTKGPMGRR
WLVLLVVIVGMFAVPLLAGLAPEHGH*
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Synonyms
Publications