NO09G02910.1, NO09G02910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02910.1
Unique NameNO09G02910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2062
Alignment locationchr9:855499..857560 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:855499..857560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02910.1 vs.
Match: EWM27521.1 (Zinc/iron permease [Nannochloropsis gaditana])

HSP 1 Score: 290.4 bits (742), Expect = 1.000e-74
Identity = 213/493 (43.20%), Postives = 285/493 (57.81%), Query Frame = 0 
Query:    8 MANSSASRHGGGIFVLLNLLLGVLTFVVFLSTRRIILAPFQAILLNALACGILVGAVLGIILPEGFHAQQDGKEGSEASGMPILVGYALQVTLENVGSFFNG--HGHSRDHTVPSKHSPLPHAPLDE-----DSDDEEGEGVELDGGVEYLGEEGKGKSRGKDVTQQLFSASHISSSTCAGRSITPNREIVIELLSLNGA--ASPPLSSEN----PTAAATAAIREERERISSSSSSSSSSSVSNRSPHRHNLHQHAHHHLSIGSAEGLVDFSSSSSAPVAAITEIKGCCIFQPSFVGLLIHCLADGIAIGASSLGNASLLGAVFLALVIHKLPVAFATGTWVTTITA-----ATKRPPYRLLQQ-----QQQQQQQQQQKGRSEVFWYHALAFASASPFAAFLTRVILQLQRRRHQQD--ESSGSSNIFVGQVLLFSGGTFLYVSVGHILPELMHSSQMTKGPMGRRWLVLLVVIVGMFAVPLLAGLAPEHG 476
            MA  + S  GG  FV LNL+L  LT  VFLSTRR+ LAP   + LNAL+CGILVGAVLGIILPEGF AQQ G +G EASG+PIL+GYA Q+ L+NVG+      H HS   +   KHSPLP  P D      + D E  + + ++       E G G+          F +    +S+      +   E ++E+ S+ G     PP +  +    P  + +AA R  R+        SS+S +  R   R   H       S    +G +      S P    +   G    QP+F+GLL+HCLADG+A+GASSLG +SL   V+LAL+IHKLPVAFATGT +    +      T R P++ L Q     Q+Q+QQ  +Q+ R++ F YHALAF+ ASP AA  T +IL++Q+R+  ++  ES   +  FVG  LLFS GTFLYVSVGHI+PEL+HS +  +     R +VLL++I+GMFAVPLLA LAP+HG
Sbjct:    1 MAAGATSGRGG--FVGLNLVLAALTLAVFLSTRRLKLAPSHVVFLNALSCGILVGAVLGIILPEGFEAQQAGGKGREASGIPILIGYAFQLLLDNVGTACRSGHHHHSSVLSGHPKHSPLPATPRDTGEYGMEEDSERLDSLTVEASTGRAQEGGNGR----------FLSDSRRTSSALRSPWSSEDENMVEMTSVEGVPPGVPPTTRASQAHFPPPSTSAACRGGRQ-----PGRSSNSPLYPRESQRD--HYRPSQRTSKARGDGSLPALRGPSGPTLLGSGDGGSP--QPAFLGLLVHCLADGVALGASSLGTSSLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELLHSHEHVRNTFVTRAVVLLLLIMGMFAVPLLARLAPDHG 472
The following BLAST results are available for this feature:
BLAST of NO09G02910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27521.11.000e-7443.20Zinc/iron permease [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02910NO09G02910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02910.1NO09G02910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02910.1.cds1NO09G02910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02910.1 ID=NO09G02910.1|Name=NO09G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp
TGCCTTGGCTTCACGCTTGAGAAGGATGTAGCGTGGGAGGAAGCAGGGAA
GACAAGCAAATGGAGTACCCCGAGCAACGGCAACCACACAACAACGGGCT
GTCGTGAAGCCTGGCCAGGGAGGCAGGAGGTCGTGAGACGCCTCTCTCTC
TACCCCAGAGCAGTGAAGAACCAGTGGTAAGGCGTGCGCACATGTGGCTT
TGCAAGGACACCGAGGGCAAAGAAGAACGACGAAGCGCAGCCATAGCCCT
CCACGAGAGACACATCCTCTAAAAGAAGAAACGCACACAGCATACCTCGC
CCAAAATAGCGCCTCTCACATACCACTGCACTCCACATGCCTCAAGCACA
CTCCAACCACACAAATTCGCCTCCGTCCTGTTTTCCCTTCCTGCTTCTCG
TACTCACACCCTACCTAAACATGATTTCCCAGGCCTTCATCATCGCATGC
AACATTCTTGCCCACTTTTTACTGCCCATATCGCACTCACTCGATTATAT
GTGACACTGCTACCTGCGATCCAAAATGATTTGGCACAGGACACTCATGG
CCAATAGCAGCGCAAGCCGCCATGGCGGTGGAATATTTGTCCTACTCAAC
CTGCTGCTGGGCGTGTTGACGTTTGTCGTCTTCTTGAGTACGCGCCGCAT
CATCCTCGCCCCCTTCCAAGCCATCCTCCTGAACGCCCTAGCATGCGGTA
TACTTGTCGGTGCTGTCCTGGGTATAATTTTACCGGAAGGGTTTCATGCA
CAACAAGACGGGAAGGAGGGCTCGGAGGCAAGCGGGATGCCTATATTGGT
CGGATATGCGCTGCAAGTGACCCTCGAGAACGTTGGAAGTTTCTTCAATG
GACATGGCCACTCTCGCGACCACACGGTCCCATCAAAGCATTCGCCTTTG
CCTCATGCGCCTCTTGATGAAGATAGTGACGATGAGGAAGGGGAGGGTGT
GGAGCTGGATGGTGGTGTGGAGTATTTGGGGGAAGAGGGGAAAGGCAAAT
CCCGCGGCAAGGACGTCACCCAGCAGCTTTTCTCCGCTTCGCACATCTCG
TCATCTACGTGTGCGGGCCGCTCCATCACCCCTAACAGAGAGATTGTGAT
TGAGTTATTGAGTTTGAACGGCGCAGCATCTCCACCCCTTTCTTCGGAAA
ATCCGACAGCAGCGGCAACAGCAGCAATACGAGAGGAAAGGGAGCGGATC
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTGTCAGCAACCGGAGCCC
TCACCGGCATAATCTACACCAGCATGCTCATCACCACCTTTCTATCGGGA
GCGCCGAAGGTCTCGTGGACTTCTCCTCTTCCTCCTCCGCCCCCGTCGCC
GCCATAACAGAAATAAAAGGCTGCTGTATTTTCCAACCGAGCTTCGTTGG
TCTCCTTATCCATTGTCTTGCGGACGGCATTGCTATAGGAGCCTCTTCAT
TAGGAAATGCTTCTTTGCTGGGAGCAGTTTTTCTTGCGCTGGTAATACAT
AAGCTGCCGGTTGCCTTTGCAACTGGCACGTGGGTCACCACCATCACAGC
AGCCACAAAACGGCCACCGTACCGTCTGCTGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAAAAAGGGAGATCTGAAGTGTTTTGGTACCACGCC
TTGGCGTTCGCATCGGCTTCACCCTTCGCTGCGTTCCTCACGCGCGTCAT
CCTGCAGCTGCAACGACGACGGCATCAGCAGGACGAGAGCAGCGGCAGCA
GCAATATTTTCGTGGGACAAGTTTTATTGTTTTCCGGCGGAACGTTTCTG
TATGTAAGTGTGGGGCATATATTGCCTGAGTTGATGCATTCGTCGCAGAT
GACGAAAGGCCCGATGGGGAGGAGGTGGCTGGTGTTGTTGGTGGTGATAG
TCGGAATGTTTGCTGTGCCGTTGCTAGCTGGACTGGCGCCAGAGCATGGA
CATTGAGGAAATGTGGATCGAAAGAATGTAGGAAGTGCAGTGTATTTTTT
ATGAATAGATGTAGTAGATGTGTCAGATTGCTGATAAGGAAATGGCCAAA
AAAACTTGGAGA
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protein sequence of NO09G02910.1

>NO09G02910.1-protein ID=NO09G02910.1-protein|Name=NO09G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MIWHRTLMANSSASRHGGGIFVLLNLLLGVLTFVVFLSTRRIILAPFQAI
LLNALACGILVGAVLGIILPEGFHAQQDGKEGSEASGMPILVGYALQVTL
ENVGSFFNGHGHSRDHTVPSKHSPLPHAPLDEDSDDEEGEGVELDGGVEY
LGEEGKGKSRGKDVTQQLFSASHISSSTCAGRSITPNREIVIELLSLNGA
ASPPLSSENPTAAATAAIREERERISSSSSSSSSSSVSNRSPHRHNLHQH
AHHHLSIGSAEGLVDFSSSSSAPVAAITEIKGCCIFQPSFVGLLIHCLAD
GIAIGASSLGNASLLGAVFLALVIHKLPVAFATGTWVTTITAATKRPPYR
LLQQQQQQQQQQQQKGRSEVFWYHALAFASASPFAAFLTRVILQLQRRRH
QQDESSGSSNIFVGQVLLFSGGTFLYVSVGHILPELMHSSQMTKGPMGRR
WLVLLVVIVGMFAVPLLAGLAPEHGH*
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mRNA from alignment at chr9:855499..857560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02910.1 ID=NO09G02910.1|Name=NO09G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp|location=Sequence derived from alignment at chr9:855499..857560- (Nannochloropsis oceanica)
TGCCTTGGCTTCACGCTTGAGAAGGATGTAGCGTGGGAGGAAGCAGGGAA
GACAAGCAAATGGAGTACCCCGAGCAACGGCAACCACACAACAACGGGCT
GTCGTGAAGCCTGGCCAGGGAGGCAGGAGGTCGTGAGACGCCTCTCTCTC
TACCCCAGAGCAGTGAAGAACCAGTGGTAAGGCGTGCGCACATGTGGCTT
TGCAAGGACACCGAGGGCAAAGAAGAACGACGAAGCGCAGCCATAGCCCT
CCACGAGAGACACATCCTCTAAAAGAAGAAACGCACACAGCATACCTCGC
CCAAAATAGCGCCTCTCACATACCACTGCACTCCACATGCCTCAAGCACA
CTCCAACCACACAAATTCGCCTCCGTCCTGTTTTCCCTTCCTGCTTCTCG
TACTCACACCCTACCTAAACATGATTTCCCAGGCCTTCATCATCGCATGC
AACATTCTTGCCCACTTTTTACTGCCCATATCGCACTCACTCGATTATAT
GTGACACTGCTACCTGCGATCCAAAATGATTTGGCACAGGACACTCATGG
CCAATAGCAGCGCAAGCCGCCATGGCGGTGGAATATTTGTCCTACTCAAC
CTGCTGCTGGGCGTGTTGACGTTTGTCGTCTTCTTGAGTACGCGCCGCAT
CATCCTCGCCCCCTTCCAAGCCATCCTCCTGAACGCCCTAGCATGCGGTA
TACTTGTCGGTGCTGTCCTGGGTATAATTTTACCGGAAGGGTTTCATGCA
CAACAAGACGGGAAGGAGGGCTCGGAGGCAAGCGGGATGCCTATATTGGT
CGGATATGCGCTGCAAGTGACCCTCGAGAACGTTGGAAGTTTCTTCAATG
GACATGGCCACTCTCGCGACCACACGGTCCCATCAAAGCATTCGCCTTTG
CCTCATGCGCCTCTTGATGAAGATAGTGACGATGAGGAAGGGGAGGGTGT
GGAGCTGGATGGTGGTGTGGAGTATTTGGGGGAAGAGGGGAAAGGCAAAT
CCCGCGGCAAGGACGTCACCCAGCAGCTTTTCTCCGCTTCGCACATCTCG
TCATCTACGTGTGCGGGCCGCTCCATCACCCCTAACAGAGAGATTGTGAT
TGAGTTATTGAGTTTGAACGGCGCAGCATCTCCACCCCTTTCTTCGGAAA
ATCCGACAGCAGCGGCAACAGCAGCAATACGAGAGGAAAGGGAGCGGATC
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTGTCAGCAACCGGAGCCC
TCACCGGCATAATCTACACCAGCATGCTCATCACCACCTTTCTATCGGGA
GCGCCGAAGGTCTCGTGGACTTCTCCTCTTCCTCCTCCGCCCCCGTCGCC
GCCATAACAGAAATAAAAGGCTGCTGTATTTTCCAACCGAGCTTCGTTGG
TCTCCTTATCCATTGTCTTGCGGACGGCATTGCTATAGGAGCCTCTTCAT
TAGGAAATGCTTCTTTGCTGGGAGCAGTTTTTCTTGCGCTGGTAATACAT
AAGCTGCCGGTTGCCTTTGCAACTGGCACGTGGGTCACCACCATCACAGC
AGCCACAAAACGGCCACCGTACCGTCTGCTGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAAAAAGGGAGATCTGAAGTGTTTTGGTACCACGCC
TTGGCGTTCGCATCGGCTTCACCCTTCGCTGCGTTCCTCACGCGCGTCAT
CCTGCAGCTGCAACGACGACGGCATCAGCAGGACGAGAGCAGCGGCAGCA
GCAATATTTTCGTGGGACAAGTTTTATTGTTTTCCGGCGGAACGTTTCTG
TATGTAAGTGTGGGGCATATATTGCCTGAGTTGATGCATTCGTCGCAGAT
GACGAAAGGCCCGATGGGGAGGAGGTGGCTGGTGTTGTTGGTGGTGATAG
TCGGAATGTTTGCTGTGCCGTTGCTAGCTGGACTGGCGCCAGAGCATGGA
CATTGAGGAAATGTGGATCGAAAGAATGTAGGAAGTGCAGTGTATTTTTT
ATGAATAGATGTAGTAGATGTGTCAGATTGCTGATAAGGAAATGGCCAAA
AAAACTTGGAGA
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Coding sequence (CDS) from alignment at chr9:855499..857560-

>NO09G02910.1 ID=NO09G02910.1|Name=NO09G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at chr9:855499..857560- (Nannochloropsis oceanica)
ATGATTTGGCACAGGACACTCATGGCCAATAGCAGCGCAAGCCGCCATGG
CGGTGGAATATTTGTCCTACTCAACCTGCTGCTGGGCGTGTTGACGTTTG
TCGTCTTCTTGAGTACGCGCCGCATCATCCTCGCCCCCTTCCAAGCCATC
CTCCTGAACGCCCTAGCATGCGGTATACTTGTCGGTGCTGTCCTGGGTAT
AATTTTACCGGAAGGGTTTCATGCACAACAAGACGGGAAGGAGGGCTCGG
AGGCAAGCGGGATGCCTATATTGGTCGGATATGCGCTGCAAGTGACCCTC
GAGAACGTTGGAAGTTTCTTCAATGGACATGGCCACTCTCGCGACCACAC
GGTCCCATCAAAGCATTCGCCTTTGCCTCATGCGCCTCTTGATGAAGATA
GTGACGATGAGGAAGGGGAGGGTGTGGAGCTGGATGGTGGTGTGGAGTAT
TTGGGGGAAGAGGGGAAAGGCAAATCCCGCGGCAAGGACGTCACCCAGCA
GCTTTTCTCCGCTTCGCACATCTCGTCATCTACGTGTGCGGGCCGCTCCA
TCACCCCTAACAGAGAGATTGTGATTGAGTTATTGAGTTTGAACGGCGCA
GCATCTCCACCCCTTTCTTCGGAAAATCCGACAGCAGCGGCAACAGCAGC
AATACGAGAGGAAAGGGAGCGGATCAGCAGCAGCAGCAGCAGCAGCAGCA
GTAGCAGTGTCAGCAACCGGAGCCCTCACCGGCATAATCTACACCAGCAT
GCTCATCACCACCTTTCTATCGGGAGCGCCGAAGGTCTCGTGGACTTCTC
CTCTTCCTCCTCCGCCCCCGTCGCCGCCATAACAGAAATAAAAGGCTGCT
GTATTTTCCAACCGAGCTTCGTTGGTCTCCTTATCCATTGTCTTGCGGAC
GGCATTGCTATAGGAGCCTCTTCATTAGGAAATGCTTCTTTGCTGGGAGC
AGTTTTTCTTGCGCTGGTAATACATAAGCTGCCGGTTGCCTTTGCAACTG
GCACGTGGGTCACCACCATCACAGCAGCCACAAAACGGCCACCGTACCGT
CTGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAAAGGGAG
ATCTGAAGTGTTTTGGTACCACGCCTTGGCGTTCGCATCGGCTTCACCCT
TCGCTGCGTTCCTCACGCGCGTCATCCTGCAGCTGCAACGACGACGGCAT
CAGCAGGACGAGAGCAGCGGCAGCAGCAATATTTTCGTGGGACAAGTTTT
ATTGTTTTCCGGCGGAACGTTTCTGTATGTAAGTGTGGGGCATATATTGC
CTGAGTTGATGCATTCGTCGCAGATGACGAAAGGCCCGATGGGGAGGAGG
TGGCTGGTGTTGTTGGTGGTGATAGTCGGAATGTTTGCTGTGCCGTTGCT
AGCTGGACTGGCGCCAGAGCATGGACATTGA
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Synonyms
Publications