NO09G02730, NO09G02730 (gene) Nannochloropsis oceanica

Overview
NameNO09G02730
Unique NameNO09G02730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length495
Alignment locationchr9:805774..806268 -

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Properties
Property NameValue
DescriptionPresenilin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:805774..806268 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0016485protein processing
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR001108Peptidase_A22A
Homology
[Close]
BLAST of NO09G02730 vs. NCBI_GenBank
Match: EWM27520.1 (presenilin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 213.0 bits (541), Expect = 7.000e-52
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 0 
Query:   39 TQPDGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAINDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            ++ +GLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNV FATEDQGVSVYAI+DGDADGNGGDSNSVKLGKSL+NALTIVGVICGAT +VVLLYKFRCMKCLFGYMA SSTMLLGLMGG
Sbjct:   39 SRAEGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVAFATEDQGVSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGG 158
[Close]
BLAST of NO09G02730 vs. NCBI_GenBank
Match: GAX92749.1 (presenilin-like protein [Pythium insidiosum])

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-15
Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 0 
Query:   28 RTSTPSRDPAHTQP--------DGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAINDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            + +TPS D AH QP        D    ED+++  NSFWA++ PV +TM LAS+VVVN      +  +  Y +     + +G +    ++G SL+NAL I+G I   T ++VLLYKF C+K L GY+ F+S  +L  +GG
Sbjct:   44 KLTTPSGDNAHHQPPAARQSQNDEGVTEDLMHGINSFWAIVFPVCITMILASVVVVNYRNKNIEASMQTYLVFGAAEEQSGAE----QIGLSLVNALVIIGAIAVLTFVMVLLYKFNCLKFLTGYIMFASAAILSFVGG 178
[Close]
BLAST of NO09G02730 vs. NCBI_GenBank
Match: POM81535.1 (Presenilin-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-15
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = 0 
Query:   40 QPDGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAINDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            Q  G   +D+++  NSFWA++ PV +TM LASLVVVN   ++ +  +S Y +  GD+  +   S    +G+SL+NAL I+G I   T  + LLYK+ CMK L GY+ F+ST +L  +GG
Sbjct:   60 QQQGEGYDDLMHGINSFWAIVFPVCVTMILASLVVVNYRSSSIEASMSTYLVY-GDSGSDTSSSGGSGIGESLVNALVIIGAIALLTFGMALLYKYNCMKFLSGYIMFASTAILSFVGG 177
[Close]
BLAST of NO09G02730 vs. NCBI_GenBank
Match: XP_002908388.1 (presenilin-like protein [Phytophthora infestans T30-4] >EEY61471.1 presenilin-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 91.3 bits (225), Expect = 3.100e-15
Identity = 51/118 (43.22%), Postives = 76/118 (64.41%), Query Frame = 0 
Query:   41 PDGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAINDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            P+G   +D+++  NSFWA++ PV +TM +ASLVVVN    + +  +S Y +  GD+ G+   S    +G+SL+NAL I+G I   T  + LLYK+ CMK L GY+ F+ST +L  +GG
Sbjct:  215 PEGEGYDDLMHGINSFWAIVFPVCVTMIVASLVVVNYRSDSIEASMSTYLVY-GDS-GSSSSSGGSGIGESLVNALVIIGAIALLTFGMALLYKYNCMKFLSGYIMFASTAILSFVGG 330
[Close]
BLAST of NO09G02730 vs. NCBI_GenBank
Match: XP_009523720.1 (hypothetical protein PHYSODRAFT_350670 [Phytophthora sojae] >EGZ21003.1 hypothetical protein PHYSODRAFT_350670 [Phytophthora sojae])

HSP 1 Score: 90.5 bits (223), Expect = 5.200e-15
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 0 
Query:   28 RTSTPSRDPAHTQPDGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAINDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            R     +D +  Q  G   +D+++  NSFWA++ PV +TM +ASLVVVN   ++ +  +S Y +                +G+SL+NAL I+G I   T  + LLYK+ CMK L GY+ F+ST +L  +GG
Sbjct:  212 RAEQQQQDASPEQEQGEGYDDLMHGINSFWAIVFPVCVTMIVASLVVVNYRSSSIEASMSTYLVYGNSGSDXXXXXXXAGIGESLVNALVIIGAIAVLTFGMALLYKYNCMKFLSGYIMFASTAILSFVGG 342
[Close]
BLAST of NO09G02730 vs. NCBI_GenBank
Match: ETI56351.1 (hypothetical protein F443_01100 [Phytophthora parasitica P1569] >ETM02574.1 hypothetical protein L917_00993 [Phytophthora parasitica] >ETM55804.1 hypothetical protein L914_01031 [Phytophthora parasitica] >ETO85080.1 hypothetical protein F444_01107 [Phytophthora parasitica P1976] >ETP54129.1 hypothetical protein F442_01049 [Phytophthora parasitica P10297])

HSP 1 Score: 90.5 bits (223), Expect = 5.200e-15
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 0 
Query:   39 TQPDGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAI-NDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            T P G   +D+++  NSFWA++ PV +TM +ASLVVVN    + +  +S Y +  D ++  + G S    +G+SL+NAL I+G I   T  + LLYK+ CMK L GY+ F+ST +L  +GG
Sbjct:   57 TAPQGEGYDDLMHGINSFWAIVFPVCVTMIVASLVVVNYRSDSIEASMSSYLVYGDSNSSSSSGGSG---IGESLVNALVIIGAIAVLTFGMALLYKYNCMKFLSGYIMFASTAILSFVGG 174
[Close]
BLAST of NO09G02730 vs. NCBI_GenBank
Match: XP_008890760.1 (hypothetical protein PPTG_00936 [Phytophthora parasitica INRA-310] >ETK96124.1 hypothetical protein L915_01042 [Phytophthora parasitica] >ETN24717.1 hypothetical protein PPTG_00936 [Phytophthora parasitica INRA-310])

HSP 1 Score: 90.5 bits (223), Expect = 5.200e-15
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 0 
Query:   39 TQPDGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAI-NDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            T P G   +D+++  NSFWA++ PV +TM +ASLVVVN    + +  +S Y +  D ++  + G S    +G+SL+NAL I+G I   T  + LLYK+ CMK L GY+ F+ST +L  +GG
Sbjct:   57 TAPQGEGYDDLMHGINSFWAIVFPVCVTMIVASLVVVNYRSDSIEASMSSYLVYGDSNSSSSSGGSG---IGESLVNALVIIGAIAVLTFGMALLYKYNCMKFLSGYIMFASTAILSFVGG 174
[Close]
BLAST of NO09G02730 vs. NCBI_GenBank
Match: ETL49500.1 (hypothetical protein L916_01025 [Phytophthora parasitica])

HSP 1 Score: 90.5 bits (223), Expect = 5.200e-15
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 0 
Query:   39 TQPDGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAI-NDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            T P G   +D+++  NSFWA++ PV +TM +ASLVVVN    + +  +S Y +  D ++  + G S    +G+SL+NAL I+G I   T  + LLYK+ CMK L GY+ F+ST +L  +GG
Sbjct:   57 TAPQGEGYDDLMHGINSFWAIVFPVCVTMIVASLVVVNYRSDSIEASMSSYLVYGDSNSSSSSGGSG---IGESLVNALVIIGAIAVLTFGMALLYKYNCMKFLSGYIMFASTAILSFVGG 174
[Close]
BLAST of NO09G02730 vs. NCBI_GenBank
Match: ETP26132.1 (hypothetical protein F441_01074 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 90.5 bits (223), Expect = 5.200e-15
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 0 
Query:   39 TQPDGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAI-NDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            T P G   +D+++  NSFWA++ PV +TM +ASLVVVN    + +  +S Y +  D ++  + G S    +G+SL+NAL I+G I   T  + LLYK+ CMK L GY+ F+ST +L  +GG
Sbjct:   57 TAPQGEGYDDLMHGINSFWAIVFPVCVTMIVASLVVVNYRSDSIEASMSSYLVYGDSNSSSSSGGSG---IGESLVNALVIIGAIAVLTFGMALLYKYNCMKFLSGYIMFASTAILSFVGG 174
[Close]
BLAST of NO09G02730 vs. NCBI_GenBank
Match: KUF79834.1 (Presenilin-1 [Phytophthora nicotianae])

HSP 1 Score: 90.5 bits (223), Expect = 5.200e-15
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = 0 
Query:   39 TQPDGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAI-NDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            T P G   +D+++  NSFWA++ PV +TM +ASLVVVN    + +  +S Y +  D ++  + G S    +G+SL+NAL I+G I   T  + LLYK+ CMK L GY+ F+ST +L  +GG
Sbjct:  245 TAPQGEGYDDLMHGINSFWAIVFPVCVTMIVASLVVVNYRSDSIEASMSSYLVYGDSNSSSSSGGSG---IGESLVNALVIIGAIAVLTFGMALLYKYNCMKFLSGYIMFASTAILSFVGG 362
The following BLAST results are available for this feature:
BLAST of NO09G02730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27520.17.000e-5291.67presenilin-like protein [Nannochloropsis gaditana][more]
GAX92749.11.100e-1539.57presenilin-like protein [Pythium insidiosum][more]
POM81535.11.100e-1542.86Presenilin-like protein [Phytophthora palmivora va... [more]
XP_002908388.13.100e-1543.22presenilin-like protein [Phytophthora infestans T3... [more]
XP_009523720.15.200e-1537.40hypothetical protein PHYSODRAFT_350670 [Phytophtho... [more]
ETI56351.15.200e-1542.15hypothetical protein F443_01100 [Phytophthora para... [more]
XP_008890760.15.200e-1542.15hypothetical protein PPTG_00936 [Phytophthora para... [more]
ETL49500.15.200e-1542.15hypothetical protein L916_01025 [Phytophthora para... [more]
ETP26132.15.200e-1542.15hypothetical protein F441_01074 [Phytophthora para... [more]
KUF79834.15.200e-1542.15Presenilin-1 [Phytophthora nicotianae][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR022ncniR022Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02730.1NO09G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02730.1NO09G02730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02730 ID=NO09G02730|Name=NO09G02730|organism=Nannochloropsis oceanica|type=gene|length=495bp
ATGGCACGACCAGCACCTCCCCCGCTGCCTGCCCCTTTCCCGCCACCACC
GACTTCCTTCGACAGTAGCAGCAGCGACGAGCGTACCTCAACTCCTTCCC
GTGACCCGGCTCACACACAACCCGACGGCCTCGACATTGAGGACGTCCTG
TACTCTGCCAACTCCTTCTGGGCAGTCCTGAAGCCCGTGGCCTTGACCAT
GTTTCTAGCGAGCCTGGTGGTGGTGAATGTGGAATTTGCGACGGAAGACC
AAGGAGTGAGTGTATATGCGATAAACGACGGGGACGCAGACGGGAATGGG
GGGGACAGCAATTCCGTCAAGCTCGGCAAGTCACTCATCAATGCTTTGAC
CATAGTTGGGGTTATTTGTGGGGCGACCATTCTGGTGGTGTTGCTTTATA
AGTTTCGGTGCATGAAGTGCTTGTTTGGATACATGGCGTTTAGTAGCACG
ATGCTGTTGGGGCTGATGGGGGGTTGTTGTGGTACACGGCTTTGA
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protein sequence of NO09G02730.1

>NO09G02730.1-protein ID=NO09G02730.1-protein|Name=NO09G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MARPAPPPLPAPFPPPPTSFDSSSSDERTSTPSRDPAHTQPDGLDIEDVL
YSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAINDGDADGNG
GDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSST
MLLGLMGGCCGTRL*
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Synonyms
Publications