NO09G02730.1, NO09G02730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02730.1
Unique NameNO09G02730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length495
Alignment locationchr9:805774..806268 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:805774..806268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02730.1 vs.
Match: EWM27520.1 (presenilin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 206.1 bits (523), Expect = 8.600e-50
Identity = 117/153 (76.47%), Postives = 127/153 (83.01%), Query Frame = 0 
Query:    7 PPLPAPFPPPPTSFDSSSSDERTSTPSRDPAH-TQPDGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAINDGDADGNGGDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSSTMLLGLMGG 159
            P LP   P      + +S+     +P    A  ++ +GLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNV FATEDQGVSVYAI+DGDADGNGGDSNSVKLGKSL+NALTIVGVICGAT +VVLLYKFRCMKCLFGYMA SSTMLLGLMGG
Sbjct:    6 PSLPDSLPASHVRREPTSTSYEGRSPQLPLADASRAEGLDIEDVLYSANSFWAVLKPVALTMFLASLVVVNVAFATEDQGVSVYAIDDGDADGNGGDSNSVKLGKSLVNALTIVGVICGATFVVVLLYKFRCMKCLFGYMALSSTMLLGLMGG 158
The following BLAST results are available for this feature:
BLAST of NO09G02730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27520.18.600e-5076.47presenilin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02730NO09G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02730.1NO09G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02730.1.cds1NO09G02730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02730.1 ID=NO09G02730.1|Name=NO09G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=495bp
ATGGCACGACCAGCACCTCCCCCGCTGCCTGCCCCTTTCCCGCCACCACC
GACTTCCTTCGACAGTAGCAGCAGCGACGAGCGTACCTCAACTCCTTCCC
GTGACCCGGCTCACACACAACCCGACGGCCTCGACATTGAGGACGTCCTG
TACTCTGCCAACTCCTTCTGGGCAGTCCTGAAGCCCGTGGCCTTGACCAT
GTTTCTAGCGAGCCTGGTGGTGGTGAATGTGGAATTTGCGACGGAAGACC
AAGGAGTGAGTGTATATGCGATAAACGACGGGGACGCAGACGGGAATGGG
GGGGACAGCAATTCCGTCAAGCTCGGCAAGTCACTCATCAATGCTTTGAC
CATAGTTGGGGTTATTTGTGGGGCGACCATTCTGGTGGTGTTGCTTTATA
AGTTTCGGTGCATGAAGTGCTTGTTTGGATACATGGCGTTTAGTAGCACG
ATGCTGTTGGGGCTGATGGGGGGTTGTTGTGGTACACGGCTTTGA
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protein sequence of NO09G02730.1

>NO09G02730.1-protein ID=NO09G02730.1-protein|Name=NO09G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MARPAPPPLPAPFPPPPTSFDSSSSDERTSTPSRDPAHTQPDGLDIEDVL
YSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAINDGDADGNG
GDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSST
MLLGLMGGCCGTRL*
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mRNA from alignment at chr9:805774..806268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02730.1 ID=NO09G02730.1|Name=NO09G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=495bp|location=Sequence derived from alignment at chr9:805774..806268- (Nannochloropsis oceanica)
ATGGCACGACCAGCACCTCCCCCGCTGCCTGCCCCTTTCCCGCCACCACC
GACTTCCTTCGACAGTAGCAGCAGCGACGAGCGTACCTCAACTCCTTCCC
GTGACCCGGCTCACACACAACCCGACGGCCTCGACATTGAGGACGTCCTG
TACTCTGCCAACTCCTTCTGGGCAGTCCTGAAGCCCGTGGCCTTGACCAT
GTTTCTAGCGAGCCTGGTGGTGGTGAATGTGGAATTTGCGACGGAAGACC
AAGGAGTGAGTGTATATGCGATAAACGACGGGGACGCAGACGGGAATGGG
GGGGACAGCAATTCCGTCAAGCTCGGCAAGTCACTCATCAATGCTTTGAC
CATAGTTGGGGTTATTTGTGGGGCGACCATTCTGGTGGTGTTGCTTTATA
AGTTTCGGTGCATGAAGTGCTTGTTTGGATACATGGCGTTTAGTAGCACG
ATGCTGTTGGGGCTGATGGGGGGTTGTTGTGGTACACGGCTTTGA
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Coding sequence (CDS) from alignment at chr9:805774..806268-

>NO09G02730.1 ID=NO09G02730.1|Name=NO09G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at chr9:805774..806268- (Nannochloropsis oceanica)
ATGGCACGACCAGCACCTCCCCCGCTGCCTGCCCCTTTCCCGCCACCACC
GACTTCCTTCGACAGTAGCAGCAGCGACGAGCGTACCTCAACTCCTTCCC
GTGACCCGGCTCACACACAACCCGACGGCCTCGACATTGAGGACGTCCTG
TACTCTGCCAACTCCTTCTGGGCAGTCCTGAAGCCCGTGGCCTTGACCAT
GTTTCTAGCGAGCCTGGTGGTGGTGAATGTGGAATTTGCGACGGAAGACC
AAGGAGTGAGTGTATATGCGATAAACGACGGGGACGCAGACGGGAATGGG
GGGGACAGCAATTCCGTCAAGCTCGGCAAGTCACTCATCAATGCTTTGAC
CATAGTTGGGGTTATTTGTGGGGCGACCATTCTGGTGGTGTTGCTTTATA
AGTTTCGGTGCATGAAGTGCTTGTTTGGATACATGGCGTTTAGTAGCACG
ATGCTGTTGGGGCTGATGGGGGGTTGTTGTGGTACACGGCTTTGA
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Synonyms
Publications