NO09G02600, NO09G02600 (gene) Nannochloropsis oceanica

Overview
NameNO09G02600
Unique NameNO09G02600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length738
Alignment locationchr9:779506..780243 +

Link to JBrowse

Properties
Property NameValue
DescriptionAtp-dependent zinc metalloprotease ftsh mitochondrial-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:779506..780243 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
BLAST of NO09G02600 vs. NCBI_GenBank
Match: EWM27565.1 (atp-dependent zinc metalloprotease ftsh mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 216.9 bits (551), Expect = 7.200e-53
Identity = 132/226 (58.41%), Postives = 148/226 (65.49%), Query Frame = 0
Query:    5 SLLGSTIAGRLQVQLWGLAWRRLPHKARQVLAASPSFASTARDSSCNAFATLPRVTA-SSRSSARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIYGLTPQAPTSQLQQQRRGIIFRFMEHQKLKSLEMEANQASTDPNKQYRFLKELGKSYPEAVINRYEGGAGKVFAVNEGVTKEYLKALAKVGKLDSMPLQPLLQPLVATAAEGGG---AGREGAREGM 227
            S + + + GRLQ+QLWGLAWRRLP   RQ L ASPSF S  ++ S  AFA LPR+T+  +R+S R+                                 YGLT + P       RRGIIFRFMEHQKLKSLEMEANQ + D NKQYRFLKELGKSYPEAVI RYEGG    FAVNEGVTKEYLKALAKVGKLDSMPL+PLLQP+VA   EGGG   AG EG RE +
Sbjct:    5 STVTTALNGRLQLQLWGLAWRRLPRHTRQCLEASPSFTSRPQERSFAAFAALPRLTSPHARASLRS----------RPPASVVSSLPSSSLRSPFPGGAYGLTQRHP-------RRGIIFRFMEHQKLKSLEMEANQGAMDANKQYRFLKELGKSYPEAVITRYEGGR---FAVNEGVTKEYLKALAKVGKLDSMPLRPLLQPMVAGGTEGGGRVAAGVEGGREAL 210          
BLAST of NO09G02600 vs. NCBI_GenBank
Match: GAX96857.1 (cell division protease ftsH [Pythium insidiosum])

HSP 1 Score: 69.3 bits (168), Expect = 1.900e-8
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 0
Query:  115 QQQRRGIIFRFMEH---QKLKSLEMEANQASTDPNKQYRFLKELGKSYPEAVINRYEGGAGKVFAVNEGVTKEYLKALAKVGKLDSMPLQPLL 205
            Q   R  IF   E    ++LKSLE +AN    D  +Q+RFL+EL K YP  VI R E      FAV+E + KEY+KAL K G++DS+ +  +L
Sbjct:   43 QNGNRRTIFNMTERSRMRQLKSLEHDANLHPEDAFRQFRFLQELNKHYPALVIRRVEENR---FAVDENIQKEYVKALVKTGRIDSLDMNQVL 132          
BLAST of NO09G02600 vs. NCBI_GenBank
Match: XP_008903188.1 (hypothetical protein PPTG_10276 [Phytophthora parasitica INRA-310] >ETI50847.1 hypothetical protein F443_05675 [Phytophthora parasitica P1569] >ETL44161.1 hypothetical protein L916_05476 [Phytophthora parasitica] >ETM50484.1 hypothetical protein L914_05486 [Phytophthora parasitica] >ETN11381.1 hypothetical protein PPTG_10276 [Phytophthora parasitica INRA-310] >ETO79587.1 hypothetical protein F444_05727 [Phytophthora parasitica P1976] >ETP20632.1 hypothetical protein F441_05683 [Phytophthora parasitica CJ01A1] >ETP48565.1 hypothetical protein F442_05721 [Phytophthora parasitica P10297])

HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 0
Query:  129 QKLKSLEMEANQASTDPNKQYRFLKELGK-SYPEAVINRYEGGAGKVFAVNEGVTKEYLKALAKVGKLDSMPLQPLLQPLVATAAEGGGAGREGARE 225
            ++LKSLE  AN    DP  Q RFL+EL + +YP  V+ R E      FA++E V KEY+KAL K G+LD++ L  L +P     AE   AG E AR+
Sbjct:   47 KQLKSLEQAANANPEDPYAQLRFLQELNRNNYPALVVRRVEENR---FALDEAVQKEYIKALVKTGRLDTVDLPQLARP-----AEASYAGAEAARQ 135          
BLAST of NO09G02600 vs. NCBI_GenBank
Match: ETK90748.1 (hypothetical protein L915_05537 [Phytophthora parasitica] >ETL97333.1 hypothetical protein L917_05364 [Phytophthora parasitica] >KUF79410.1 ATP-dependent zinc metalloprotease FTSH 4 [Phytophthora nicotianae])

HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 0
Query:  129 QKLKSLEMEANQASTDPNKQYRFLKELGK-SYPEAVINRYEGGAGKVFAVNEGVTKEYLKALAKVGKLDSMPLQPLLQPLVATAAEGGGAGREGARE 225
            ++LKSLE  AN    DP  Q RFL+EL + +YP  V+ R E      FA++E V KEY+KAL K G+LD++ L  L +P     AE   AG E AR+
Sbjct:   20 KQLKSLEQAANANPEDPYAQLRFLQELNRNNYPALVVRRVEENR---FALDEAVQKEYIKALVKTGRLDTVDLPQLARP-----AEASYAGAEAARQ 108          
BLAST of NO09G02600 vs. NCBI_GenBank
Match: XP_002909608.1 (cell division protease ftsH [Phytophthora infestans T30-4] >EEY58422.1 cell division protease ftsH [Phytophthora infestans T30-4])

HSP 1 Score: 67.4 bits (163), Expect = 7.100e-8
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 0
Query:  129 QKLKSLEMEANQASTDPNKQYRFLKELGK-SYPEAVINRYEGGAGKVFAVNEGVTKEYLKALAKVGKLDSMPLQPLLQPLVATAAEGGGAGREGARE--GMMSSG 231
            ++LKSLE  AN    DP  Q RFL+EL + +YP  V+ R E      FA++E V KEY+KAL K G+LD++ L  L +P      EG  AG + AR+  G+ ++G
Sbjct:   51 KQLKSLEQAANANPEDPYTQLRFLQELNRNNYPALVVRRVEENR---FALDEAVQKEYIKALVKTGRLDTVDLPKLARP-----TEGAYAGADAARQFGGLAAAG 147          
BLAST of NO09G02600 vs. NCBI_GenBank
Match: POM57630.1 (Cell division protease ftsH [Phytophthora palmivora var. palmivora])

HSP 1 Score: 67.4 bits (163), Expect = 7.100e-8
Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = 0
Query:  110 PTSQLQQQRRGIIFRFMEHQK---LKSLEMEANQASTDPNKQYRFLKELGK-SYPEAVINRYEGGAGKVFAVNEGVTKEYLKALAKVGKLDSMPLQPLLQPLVATAAEGGGAGREGAREGMMSSGQYG 234
            P   LQ   R  +F   +  K   LKSLE  AN    D   Q RFL+EL + +YP  V+ R E      FA++E V KEY+KAL K G+LD++ L  L QP+ A A    GA R+      ++ G  G
Sbjct:   32 PPQPLQPASRRSLFNLTQRGKLKQLKSLEQSANANPEDSYAQLRFLQELNRCNYPALVVRRVEENR---FALDEAVQKEYIKALVKTGRLDTVDLPQLTQPVEAAA----GAARQFNAGPAVTRGSQG 152          
BLAST of NO09G02600 vs. NCBI_GenBank
Match: CEP00631.1 (hypothetical protein PBRA_001685 [Plasmodiophora brassicae])

HSP 1 Score: 65.9 bits (159), Expect = 2.100e-7
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 0
Query:  123 FRF---MEHQKLKSLEMEANQASTDPNKQYRFLKELGKSYPEAVINRYEGGAGKVFAVNEGVTKEYLKALAKVGKLDSMP---LQPLLQPLVATAAEGGGAGRE 221
            FRF   +  Q L+SLE  AN    DP++Q  F++ LGK +P+AV+ R++ G    +A +  V  EY+KAL + G+L+SMP   L+ L    V  A+    A  E
Sbjct:   19 FRFLSDLSEQSLRSLESMANSQPNDPHRQLMFMRALGKDHPKAVVERFQTGQ---YAESPEVVAEYIKALGQTGRLESMPETELRQLFSRAVGNASPSAAAAPE 119          
The following BLAST results are available for this feature:
BLAST of NO09G02600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM27565.17.200e-5358.41atp-dependent zinc metalloprotease ftsh mitochondr... [more]
GAX96857.11.900e-844.09cell division protease ftsH [Pythium insidiosum][more]
XP_008903188.14.200e-845.36hypothetical protein PPTG_10276 [Phytophthora para... [more]
ETK90748.14.200e-845.36hypothetical protein L915_05537 [Phytophthora para... [more]
XP_002909608.17.100e-842.86cell division protease ftsH [Phytophthora infestan... [more]
POM57630.17.100e-839.06Cell division protease ftsH [Phytophthora palmivor... [more]
CEP00631.12.100e-738.46hypothetical protein PBRA_001685 [Plasmodiophora b... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL122nonsL122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010767NSK010767Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02600.1NO09G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100015g28gene3009Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02600.1NO09G02600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02600 ID=NO09G02600|Name=NO09G02600|organism=Nannochloropsis oceanica|type=gene|length=738bp
ATGCCATCCTCCTCGCTGCTGGGCAGCACCATAGCGGGCCGTCTACAAGT
CCAGCTTTGGGGACTGGCATGGCGTCGGCTCCCTCATAAGGCCCGTCAAG
TTCTGGCAGCTTCCCCATCCTTTGCTTCCACCGCTCGAGACAGCTCTTGC
AACGCCTTCGCCACCCTGCCCCGCGTCACGGCTAGCAGCAGGAGCAGCGC
TCGTGCGGCGTTGCGTCAAAGGGCCTCTGTTTCCTCCCCCTCCACTCCCC
TCACCAGCAGTAGCAGAAGCAGCAGCAGCAGTAGAAGCAGTAGCTGTCCC
TCCATCTACGGCCTGACCCCTCAAGCCCCCACCTCCCAACTACAACAACA
ACGACGCGGCATCATCTTCCGTTTCATGGAACACCAAAAACTCAAATCTC
TGGAAATGGAAGCGAATCAAGCCTCCACTGATCCCAACAAACAATACCGC
TTTTTGAAGGAGCTAGGGAAATCCTACCCTGAAGCCGTCATCAACCGCTA
TGAAGGAGGAGCAGGAAAAGTTTTCGCGGTCAATGAGGGGGTGACCAAAG
AGTACTTGAAAGCGCTAGCGAAGGTAGGAAAACTAGATAGCATGCCACTC
CAGCCGTTGTTGCAACCGTTGGTGGCCACGGCGGCGGAAGGGGGGGGAGC
AGGGAGGGAGGGAGCCAGGGAGGGGATGATGAGTTCAGGCCAATATGGGG
GGGGGGGATGGGAATGCCTGCCGCCGGGGCGGCTTTAG
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protein sequence of NO09G02600.1

>NO09G02600.1-protein ID=NO09G02600.1-protein|Name=NO09G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MPSSSLLGSTIAGRLQVQLWGLAWRRLPHKARQVLAASPSFASTARDSSC
NAFATLPRVTASSRSSARAALRQRASVSSPSTPLTSSSRSSSSSRSSSCP
SIYGLTPQAPTSQLQQQRRGIIFRFMEHQKLKSLEMEANQASTDPNKQYR
FLKELGKSYPEAVINRYEGGAGKVFAVNEGVTKEYLKALAKVGKLDSMPL
QPLLQPLVATAAEGGGAGREGAREGMMSSGQYGGGGWECLPPGRL*
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Synonyms
Publications