NO09G02300, NO09G02300 (gene) Nannochloropsis oceanica

Overview
NameNO09G02300
Unique NameNO09G02300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1557
Alignment locationchr9:691692..693248 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:691692..693248 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
IPR009783DUF1348
Homology
[Close]
BLAST of NO09G02300 vs. NCBI_GenBank
Match: EWM27541.1 (hypothetical protein Naga_100015g44 [Nannochloropsis gaditana])

HSP 1 Score: 298.5 bits (763), Expect = 1.700e-77
Identity = 136/165 (82.42%), Postives = 149/165 (90.30%), Query Frame = 0 
Query:   52 RDFSSGTVA--DPEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYIRNPKTGLVEFPQGHPA 215
            R F+S T A  +PEARPPFPP+TFETA EKVRKAQDAWNTRNPD+VA+AYTPDS WRNR+ F QGREAI+ FL  KWAKE DYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWE++AKGLM+RRDASINDVRIK S+RRYIRNP TGLVE+P GHP+
Sbjct:   45 RQFTSSTGASNNPEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYIRNPSTGLVEYPLGHPS 209
[Close]
BLAST of NO09G02300 vs. NCBI_GenBank
Match: WP_103545123.1 (nuclear transport factor 2 family protein [Streptomyces sp. SM1])

HSP 1 Score: 213.4 bits (542), Expect = 7.000e-52
Identity = 95/143 (66.43%), Postives = 116/143 (81.12%), Query Frame = 0 
Query:   62 PEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYIRNPKTG 205
            PE RPP+PPFT ETA  KV+ A+DAWNTR+P  VA+AYTPDSRWRNR+TFL GRE I  FL+ KW +E+DY L K LWGFH NRI+ RF+YEWHD +G+WWRS+GNE WEF+ +GLM+RR+ASINDV I+ +DRR I  P+ G
Sbjct:    2 PEDRPPYPPFTRETALRKVQAAEDAWNTRDPHRVALAYTPDSRWRNRDTFLSGREEIVAFLTRKWERELDYALRKSLWGFHENRIAVRFQYEWHDAEGRWWRSYGNELWEFDERGLMRRREASINDVAIREADRR-IHGPRPG 143
[Close]
BLAST of NO09G02300 vs. NCBI_GenBank
Match: WP_017557283.1 (DUF1348 domain-containing protein [Nocardiopsis baichengensis])

HSP 1 Score: 209.1 bits (531), Expect = 1.300e-50
Identity = 95/137 (69.34%), Postives = 111/137 (81.02%), Query Frame = 0 
Query:   62 PEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYI 199
            PE+RPP PPFT ETA +KV+ A+DAWNTR+P  VA+AYTPDS WRNR+TFLQGR+ I  FL+ KW +E+DY L K LW FHGNRI+ RF+YE  D  GQWWRSHGNEQWEF+A+GLM RR+ASINDV I  SDRR I
Sbjct:    2 PESRPPVPPFTLETALQKVQAAEDAWNTRDPHRVALAYTPDSVWRNRDTFLQGRDEIIAFLTRKWERELDYALRKSLWAFHGNRIAVRFQYESRDSAGQWWRSHGNEQWEFDAQGLMLRREASINDVPIAESDRRII 138
[Close]
BLAST of NO09G02300 vs. NCBI_GenBank
Match: WP_073937606.1 (DUF1348 domain-containing protein [Streptomyces sp. CB02400] >OKJ89751.1 histidine kinase [Streptomyces sp. CB02400])

HSP 1 Score: 209.1 bits (531), Expect = 1.300e-50
Identity = 92/141 (65.25%), Postives = 115/141 (81.56%), Query Frame = 0 
Query:   62 PEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYIRNPK 203
            PE RPP+PPFT ETA +KV+ A+DAWNTR+P  VA+AYTPDSRWRNR+TF+ GRE I  FL+ KW +E+DY L K LWGFH NRI+ RF+YEWHD +G+WWRS+GNE W+F+ +GLM+RR+ASINDV I  +DRR I  P+
Sbjct:    2 PEDRPPYPPFTQETALQKVQAAEDAWNTRDPHRVALAYTPDSRWRNRDTFISGREEIVAFLTQKWERELDYALRKSLWGFHENRIAVRFQYEWHDAEGRWWRSYGNELWDFDERGLMRRREASINDVAIPEADRR-IHGPR 141
[Close]
BLAST of NO09G02300 vs. NCBI_GenBank
Match: WP_017536987.1 (DUF1348 domain-containing protein [Nocardiopsis halophila])

HSP 1 Score: 207.6 bits (527), Expect = 3.900e-50
Identity = 94/137 (68.61%), Postives = 110/137 (80.29%), Query Frame = 0 
Query:   62 PEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYI 199
            PE+RPP PPFT ETA +KV+ A+DAWNTR+P  VA+AYTPDS WRNR+TFLQG + I  FL+ KW +E+DY L K LW FHGNRI+ RF+YE  D  GQWWRSHGNEQWEF+A+GLM RR+ASINDV I  SDRR I
Sbjct:    2 PESRPPVPPFTLETALQKVQAAEDAWNTRDPHRVALAYTPDSVWRNRDTFLQGHDEIIAFLTRKWERELDYALRKSLWAFHGNRIAVRFQYESRDSAGQWWRSHGNEQWEFDAQGLMLRREASINDVAIAESDRRII 138
[Close]
BLAST of NO09G02300 vs. NCBI_GenBank
Match: WP_071902744.1 (DUF1348 domain-containing protein [Cystobacter ferrugineus] >OJH36251.1 hypothetical protein BON30_34410 [Cystobacter ferrugineus])

HSP 1 Score: 207.6 bits (527), Expect = 3.900e-50
Identity = 93/136 (68.38%), Postives = 111/136 (81.62%), Query Frame = 0 
Query:   63 EARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYI 199
            E RPP PPFT+ETA EKVRKA+DAWN+R+P  VA+AYT DSRWRNR  F+QGR AI   L+ KW KE+DY L+KELW FH NRIS RF+YEWHD  G W+RSHGNEQWEF+  GLM+RR+ASINDV I AS+R+++
Sbjct:    3 ELRPPLPPFTYETAVEKVRKAEDAWNSRDPQRVALAYTQDSRWRNRSEFVQGRPAIIGLLTRKWEKELDYRLIKELWAFHQNRISVRFQYEWHDSTGNWFRSHGNEQWEFDENGLMRRREASINDVPISASERKFL 138
[Close]
BLAST of NO09G02300 vs. NCBI_GenBank
Match: WP_092928637.1 (DUF1348 domain-containing protein [Actinopolyspora alba] >SFE42359.1 hypothetical protein SAMN04487819_11372 [Actinopolyspora alba])

HSP 1 Score: 207.2 bits (526), Expect = 5.000e-50
Identity = 96/142 (67.61%), Postives = 113/142 (79.58%), Query Frame = 0 
Query:   62 PEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYIRNPKT 204
            PEARPP+PPFT ETA  KV+ A+DAWNTR+P  VA AYTPDS WRNR+TFL+GRE I TFL+ KW +E+DY L K LWGFH NRI+ RF+YE HD  GQWWRS+GNE WEF+  GLM+RR+ASINDV I  +DRR I  P+T
Sbjct:    2 PEARPPYPPFTRETALRKVQAAEDAWNTRDPHRVAAAYTPDSTWRNRDTFLRGREEIITFLTRKWERELDYALRKSLWGFHENRIAVRFQYECHDTTGQWWRSYGNEMWEFDEHGLMRRREASINDVAITETDRR-IHGPRT 142
[Close]
BLAST of NO09G02300 vs. NCBI_GenBank
Match: WP_043573655.1 (DUF1348 domain-containing protein [Actinopolyspora erythraea] >KGI81152.1 histidine kinase [Actinopolyspora erythraea] >ASU79024.1 DUF1348 domain-containing protein [Actinopolyspora erythraea])

HSP 1 Score: 206.8 bits (525), Expect = 6.600e-50
Identity = 95/143 (66.43%), Postives = 113/143 (79.02%), Query Frame = 0 
Query:   62 PEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYIRNPKTG 205
            PE RPP+PPFT ETA  KV+ A+DAWNTR+P  VA AYTPDS WRNR+TFL+GRE I TFL+ KW +E+DY L K LWGFH NRI+ RF+YE HD  GQWWRS+GNE WEF+  GLM+RR+ASINDV I  +DRR I  P++G
Sbjct:    2 PEDRPPYPPFTRETALRKVQAAEDAWNTRDPRRVATAYTPDSTWRNRDTFLRGREEIVTFLTRKWERELDYALRKNLWGFHENRIAVRFQYECHDAAGQWWRSYGNEMWEFDENGLMRRREASINDVAIAETDRR-IHGPRSG 143
[Close]
BLAST of NO09G02300 vs. NCBI_GenBank
Match: WP_058940933.1 (DUF1348 domain-containing protein [Streptomyces kanasensis] >KUH39741.1 histidine kinase [Streptomyces kanasensis])

HSP 1 Score: 206.8 bits (525), Expect = 6.600e-50
Identity = 93/141 (65.96%), Postives = 113/141 (80.14%), Query Frame = 0 
Query:   62 PEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYIRNPK 203
            PE RPP+PPFT ETA +KV+ A+DAWNTR+P  VA AYTPDS WRNR+ F+ GRE I  FL+ KW +E DY L K LWGFHGNRI+ RF+YEWHD +GQWWRS+GNE WEF+A+GLM+RR+ASINDV I  ++RR I  P+
Sbjct:    2 PEDRPPYPPFTQETALQKVQAAEDAWNTRDPRRVASAYTPDSMWRNRDRFVAGREEIVAFLTRKWERERDYALRKSLWGFHGNRIAVRFQYEWHDAEGQWWRSYGNELWEFDARGLMRRREASINDVAITGAERR-IHGPR 141
[Close]
BLAST of NO09G02300 vs. NCBI_GenBank
Match: WP_017624819.1 (DUF1348 domain-containing protein [Nocardiopsis chromatogenes])

HSP 1 Score: 205.3 bits (521), Expect = 1.900e-49
Identity = 93/134 (69.40%), Postives = 107/134 (79.85%), Query Frame = 0 
Query:   63 EARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRR 197
            E RPPFPPFT ETA +KV+ A+DAWNTR+P+ VA+AYTPDS WRNR+ FLQGRE I  FL+ KW +E+DY L K LW FHGNRI+ RF+YE  D  GQWWRSHGNEQWEF+  GLM RR+ASINDV I  SDRR
Sbjct:    3 EPRPPFPPFTEETALQKVQAAEDAWNTRDPERVALAYTPDSVWRNRDVFLQGREEIAAFLARKWERELDYALRKSLWAFHGNRIAVRFQYECRDTSGQWWRSHGNEQWEFDTNGLMLRREASINDVPIAESDRR 136
The following BLAST results are available for this feature:
BLAST of NO09G02300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27541.11.700e-7782.42hypothetical protein Naga_100015g44 [Nannochlorops... [more]
WP_103545123.17.000e-5266.43nuclear transport factor 2 family protein [Strepto... [more]
WP_017557283.11.300e-5069.34DUF1348 domain-containing protein [Nocardiopsis ba... [more]
WP_073937606.11.300e-5065.25DUF1348 domain-containing protein [Streptomyces sp... [more]
WP_017536987.13.900e-5068.61DUF1348 domain-containing protein [Nocardiopsis ha... [more]
WP_071902744.13.900e-5068.38DUF1348 domain-containing protein [Cystobacter fer... [more]
WP_092928637.15.000e-5067.61DUF1348 domain-containing protein [Actinopolyspora... [more]
WP_043573655.16.600e-5066.43DUF1348 domain-containing protein [Actinopolyspora... [more]
WP_058940933.16.600e-5065.96DUF1348 domain-containing protein [Streptomyces ka... [more]
WP_017624819.11.900e-4969.40DUF1348 domain-containing protein [Nocardiopsis ch... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010748NSK010748Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02300.1NO09G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G02300.2NO09G02300.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588728gene_4320Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g44gene2995Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02300.1NO09G02300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G02300.2NO09G02300.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02300 ID=NO09G02300|Name=NO09G02300|organism=Nannochloropsis oceanica|type=gene|length=1557bp
CGAGTGTTGGGGAGGTTGAAAGGCTTGCTTGCCCCTCCCCAAGATTGGGG
CCAATCAACAATGATCTTTCTTTCCAACCATCCCTCGTCTCCCTCGCTAA
GCATGCCGATGAGTACACATGCGCCAATAAAAGAAAATGATAAAGCAATA
CGATAGTTCCATATAAAAATAAACTCCATGCTCTCTGAAAGAATGTCATA
ACTGATTTCAACTCAACTCAAGTCGTCTCGTTTGCGTATGCCTTGCCCTG
TGTTTTCTACCATATCTAAGACTAACACACACAAATCCCCGGGGTCAGGA
CTAAGTCAAGCCTTGACAAGATGGCCCCGCTCGCAGCCACCCTTGGGGCC
GTCAGAGGGAGAGCCTCGAGTTATATCGTCATCCGAACATCGTTACTACA
AGTGCAACCTGTCCAAATCACCCTTCCAACACGCGGTCAGGGCCCTCAGC
GCCACCGATCAGGGGTGCAGCGACGTGACTTCAGCAGCGGTACTGTTGCT
GACCCTGAAGCGCGCCCCCCCTTCCCTCCTTTCACGTTTGAGACCGCTAA
GGAAAAGgtaaacgcgtgcgagttcacttgagcggacatggaatccttac
aattgtagctcagtttatcgacaccatcccctatctctttagGTTCGAAA
GGCACAAGACGCGTGGAATACTCGGAACCCGGACATGGTGGCCATGGCAT
gtacgtacctctctaataatacgaagtctgaaaacagcgaagaggccgtc
acctttgaccttctttcctactcttcccccgtctatccttaacagACACC
CCTGACAGCCGCTGGCGCAATCGCGAAACATTTCTCCAGGGTCGTGAGgt
gagactttgaagcgatctcgggattgcatgaagtggggtcatatcctacc
cctgccacccctcattcattctgctccgtgaaacgcaccatgcagGCTAT
TAAGACGTTCTTGAGCAATAAGTGGGCCAAGGAGATAGACTACTGTTTGA
TGAAGGAGCTGTGGGGTTTCCATGGGAACCGGATCAGTGCCCGTTTTGAG
TACGAGTGGCACGACGGTCAGGGGCAGTGGTGGCGATCGCACGGGAATGA
GCAGTGGGAATTTAACGCGAAGGGTACGTGCGTCAGTGAAGAAGGTGCGG
AGGATTGCATGGAGGAGGATAACATACACTGATGCACATTTATTTGTCTT
ACATCTCGTTTATCCTCGCAAGAAATATATATACGTAAGGCGGCAGGAGA
GTCCTTAACCCATACCAAGGCTTCTCGTTACCCATTCTTTCCTTACTCCA
GGCTTGATGCAGCGGCGCGACGCCAGCATCAACGACGTTCGAATCAAGGC
GAGCGACCGCCGGTATATTAGGAATCCCAAGACTGGCCTGGTTGAGTTTC
CTCAGGGCCATCCTGCGGACAAGTAAATTAACCGCACAATAGACTGGAGA
AGCTAGGAGGGTTGGGGGCAGTAGAGTGGGAAAAGATAATGAGGGAGTAG
CTTGGATATCGAAACGACACACGGAATGACCAGAAAGAAATGATAAGCGG
AGTTGAG
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protein sequence of NO09G02300.1

>NO09G02300.1-protein ID=NO09G02300.1-protein|Name=NO09G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MAPLAATLGAVRGRASSYIVIRTSLLQVQPVQITLPTRGQGPQRHRSGVQ
RRDFSSGTVADPEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYT
PDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARF
EYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYIRN
PKTGLVEFPQGHPADK*
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protein sequence of NO09G02300.2

>NO09G02300.2-protein ID=NO09G02300.2-protein|Name=NO09G02300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MAPLAATLGAVRGRASSYIVIRTSLLQVQPVQITLPTRGQGPQRHRSGVQ
RRDFSSGTVADPEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYT
PDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARF
EYEWHDGQGQWWRSHGNEQWEFNAKGTCVSEEGAEDCMEEDNIH*
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Synonyms
Publications