NO09G02300.1, NO09G02300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02300.1
Unique NameNO09G02300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1102
Alignment locationchr9:691692..693248 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:691692..693248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02300.1 vs.
Match: EWM27541.1 (hypothetical protein Naga_100015g44 [Nannochloropsis gaditana])

HSP 1 Score: 298.5 bits (763), Expect = 1.700e-77
Identity = 136/165 (82.42%), Postives = 149/165 (90.30%), Query Frame = 0 
Query:   52 RDFSSGTVA--DPEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYTPDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYIRNPKTGLVEFPQGHPA 215
            R F+S T A  +PEARPPFPP+TFETA EKVRKAQDAWNTRNPD+VA+AYTPDS WRNR+ F QGREAI+ FL  KWAKE DYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWE++AKGLM+RRDASINDVRIK S+RRYIRNP TGLVE+P GHP+
Sbjct:   45 RQFTSSTGASNNPEARPPFPPYTFETATEKVRKAQDAWNTRNPDVVALAYTPDSNWRNRDEFFQGREAIRAFLRKKWAKERDYCLMKELWGFHGNRISARFEYEWHDGQGQWWRSHGNEQWEYDAKGLMKRRDASINDVRIKESERRYIRNPSTGLVEYPLGHPS 209
The following BLAST results are available for this feature:
BLAST of NO09G02300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27541.11.700e-7782.42hypothetical protein Naga_100015g44 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02300NO09G02300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02300.1NO09G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02300.1.cds1NO09G02300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02300.1.cds2NO09G02300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02300.1.cds3NO09G02300.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02300.1.cds4NO09G02300.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02300.1.cds5NO09G02300.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02300.1 ID=NO09G02300.1|Name=NO09G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1102bp
CGAGTGTTGGGGAGGTTGAAAGGCTTGCTTGCCCCTCCCCAAGATTGGGG
CCAATCAACAATGATCTTTCTTTCCAACCATCCCTCGTCTCCCTCGCTAA
GCATGCCGATGAGTACACATGCGCCAATAAAAGAAAATGATAAAGCAATA
CGATAGTTCCATATAAAAATAAACTCCATGCTCTCTGAAAGAATGTCATA
ACTGATTTCAACTCAACTCAAGTCGTCTCGTTTGCGTATGCCTTGCCCTG
TGTTTTCTACCATATCTAAGACTAACACACACAAATCCCCGGGGTCAGGA
CTAAGTCAAGCCTTGACAAGATGGCCCCGCTCGCAGCCACCCTTGGGGCC
GTCAGAGGGAGAGCCTCGAGTTATATCGTCATCCGAACATCGTTACTACA
AGTGCAACCTGTCCAAATCACCCTTCCAACACGCGGTCAGGGCCCTCAGC
GCCACCGATCAGGGGTGCAGCGACGTGACTTCAGCAGCGGTACTGTTGCT
GACCCTGAAGCGCGCCCCCCCTTCCCTCCTTTCACGTTTGAGACCGCTAA
GGAAAAGGTTCGAAAGGCACAAGACGCGTGGAATACTCGGAACCCGGACA
TGGTGGCCATGGCATACACCCCTGACAGCCGCTGGCGCAATCGCGAAACA
TTTCTCCAGGGTCGTGAGGCTATTAAGACGTTCTTGAGCAATAAGTGGGC
CAAGGAGATAGACTACTGTTTGATGAAGGAGCTGTGGGGTTTCCATGGGA
ACCGGATCAGTGCCCGTTTTGAGTACGAGTGGCACGACGGTCAGGGGCAG
TGGTGGCGATCGCACGGGAATGAGCAGTGGGAATTTAACGCGAAGGGCTT
GATGCAGCGGCGCGACGCCAGCATCAACGACGTTCGAATCAAGGCGAGCG
ACCGCCGGTATATTAGGAATCCCAAGACTGGCCTGGTTGAGTTTCCTCAG
GGCCATCCTGCGGACAAGTAAATTAACCGCACAATAGACTGGAGAAGCTA
GGAGGGTTGGGGGCAGTAGAGTGGGAAAAGATAATGAGGGAGTAGCTTGG
ATATCGAAACGACACACGGAATGACCAGAAAGAAATGATAAGCGGAGTTG
AG
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protein sequence of NO09G02300.1

>NO09G02300.1-protein ID=NO09G02300.1-protein|Name=NO09G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MAPLAATLGAVRGRASSYIVIRTSLLQVQPVQITLPTRGQGPQRHRSGVQ
RRDFSSGTVADPEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYT
PDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARF
EYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYIRN
PKTGLVEFPQGHPADK*
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mRNA from alignment at chr9:691692..693248+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02300.1 ID=NO09G02300.1|Name=NO09G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at chr9:691692..693248+ (Nannochloropsis oceanica)
CGAGTGTTGGGGAGGTTGAAAGGCTTGCTTGCCCCTCCCCAAGATTGGGG
CCAATCAACAATGATCTTTCTTTCCAACCATCCCTCGTCTCCCTCGCTAA
GCATGCCGATGAGTACACATGCGCCAATAAAAGAAAATGATAAAGCAATA
CGATAGTTCCATATAAAAATAAACTCCATGCTCTCTGAAAGAATGTCATA
ACTGATTTCAACTCAACTCAAGTCGTCTCGTTTGCGTATGCCTTGCCCTG
TGTTTTCTACCATATCTAAGACTAACACACACAAATCCCCGGGGTCAGGA
CTAAGTCAAGCCTTGACAAGATGGCCCCGCTCGCAGCCACCCTTGGGGCC
GTCAGAGGGAGAGCCTCGAGTTATATCGTCATCCGAACATCGTTACTACA
AGTGCAACCTGTCCAAATCACCCTTCCAACACGCGGTCAGGGCCCTCAGC
GCCACCGATCAGGGGTGCAGCGACGTGACTTCAGCAGCGGTACTGTTGCT
GACCCTGAAGCGCGCCCCCCCTTCCCTCCTTTCACGTTTGAGACCGCTAA
GGAAAAGGTAAACGCGTGCGAGTTCACTTGAGCGGACATGGAATCCTTAC
AATTGTAGCTCAGTTTATCGACACCATCCCCTATCTCTTTAGGTTCGAAA
GGCACAAGACGCGTGGAATACTCGGAACCCGGACATGGTGGCCATGGCAT
GTACGTACCTCTCTAATAATACGAAGTCTGAAAACAGCGAAGAGGCCGTC
ACCTTTGACCTTCTTTCCTACTCTTCCCCCGTCTATCCTTAACAGACACC
CCTGACAGCCGCTGGCGCAATCGCGAAACATTTCTCCAGGGTCGTGAGGT
GAGACTTTGAAGCGATCTCGGGATTGCATGAAGTGGGGTCATATCCTACC
CCTGCCACCCCTCATTCATTCTGCTCCGTGAAACGCACCATGCAGGCTAT
TAAGACGTTCTTGAGCAATAAGTGGGCCAAGGAGATAGACTACTGTTTGA
TGAAGGAGCTGTGGGGTTTCCATGGGAACCGGATCAGTGCCCGTTTTGAG
TACGAGTGGCACGACGGTCAGGGGCAGTGGTGGCGATCGCACGGGAATGA
GCAGTGGGAATTTAACGCGAAGGGTACGTGCGTCAGTGAAGAAGGTGCGG
AGGATTGCATGGAGGAGGATAACATACACTGATGCACATTTATTTGTCTT
ACATCTCGTTTATCCTCGCAAGAAATATATATACGTAAGGCGGCAGGAGA
GTCCTTAACCCATACCAAGGCTTCTCGTTACCCATTCTTTCCTTACTCCA
GGCTTGATGCAGCGGCGCGACGCCAGCATCAACGACGTTCGAATCAAGGC
GAGCGACCGCCGGTATATTAGGAATCCCAAGACTGGCCTGGTTGAGTTTC
CTCAGGGCCATCCTGCGGACAAGTAAATTAACCGCACAATAGACTGGAGA
AGCTAGGAGGGTTGGGGGCAGTAGAGTGGGAAAAGATAATGAGGGAGTAG
CTTGGATATCGAAACGACACACGGAATGACCAGAAAGAAATGATAAGCGG
AGTTGAG
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Coding sequence (CDS) from alignment at chr9:691692..693248+

>NO09G02300.1 ID=NO09G02300.1|Name=NO09G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at chr9:691692..693248+ (Nannochloropsis oceanica)
ATGGCCCCGCTCGCAGCCACCCTTGGGGCCGTCAGAGGGAGAGCCTCGAG
TTATATCGTCATCCGAACATCGTTACTACAAGTGCAACCTGTCCAAATCA
CCCTTCCAACACGCGGTCAGGGCCCTCAGCGCCACCGATCAGGGGTGCAG
CGACGTGACTTCAGCAGCGGTACTGTTGCTGACCCTGAAGCGCGCCCCCC
CTTCCCTCCTTTCACGTTTGAGACCGCTAAGGAAAAGGTTCGAAAGGCAC
AAGACGCGTGGAATACTCGGAACCCGGACATGGTGGCCATGGCATACACC
CCTGACAGCCGCTGGCGCAATCGCGAAACATTTCTCCAGGGTCGTGAGGC
TATTAAGACGTTCTTGAGCAATAAGTGGGCCAAGGAGATAGACTACTGTT
TGATGAAGGAGCTGTGGGGTTTCCATGGGAACCGGATCAGTGCCCGTTTT
GAGTACGAGTGGCACGACGGTCAGGGGCAGTGGTGGCGATCGCACGGGAA
TGAGCAGTGGGAATTTAACGCGAAGGGCTTGATGCAGCGGCGCGACGCCA
GCATCAACGACGTTCGAATCAAGGCGAGCGACCGCCGGTATATTAGGAAT
CCCAAGACTGGCCTGGTTGAGTTTCCTCAGGGCCATCCTGCGGACAAGTA
A
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Synonyms
Publications