NO09G01890, NO09G01890 (gene) Nannochloropsis oceanica

Overview
NameNO09G01890
Unique NameNO09G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1074
Alignment locationchr9:588865..589940 -

Link to JBrowse

Properties
Property NameValue
DescriptionPsbQ-like domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:588865..589940 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_domain
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO09G01890 vs. NCBI_GenBank
Match: EWM27610.1 (PsbQ-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 243.4 bits (620), Expect = 5.200e-61
Identity = 127/177 (71.75%), Postives = 148/177 (83.62%), Query Frame = 0 
Query:    2 ERREVLQYSATALSAMGALGSLLASFPSAAGAASPVISELKIRESVKGVKDSVEALKLYEDFVSTKDYYGIKKSLRVPPVSEIRRDCRRIIAGLDGPIKKDTDKAYNQFIENLEQVDFLATKAIQNDNKAGDKELAQMAARFTDAQVKLQKVLELISTTRYATEPVSVRLETASTEL 179
            ERRE++  + T          +L S PS AGAASPVISE+KIRESVKGVKDSVEALKLYEDFV+TKD+YG+KKSLRVPPVS+IRRDCRRIIAGL+G +KKDTDKAY++FI +LEQVD LATKAIQND K  D+ELAQ+ ARF +AQ +L KVL+L+ TTRYATEPV+VRLET  TEL
Sbjct:   65 ERRELIHTATTXXXXXXXXXXILLSLPSVAGAASPVISEIKIRESVKGVKDSVEALKLYEDFVNTKDFYGVKKSLRVPPVSDIRRDCRRIIAGLEGSVKKDTDKAYSEFIVSLEQVDLLATKAIQNDQKIKDEELAQLTARFAEAQARLDKVLKLVLTTRYATEPVNVRLETEKTEL 241
The following BLAST results are available for this feature:
BLAST of NO09G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27610.15.200e-6171.75PsbQ-like domain protein [Nannochloropsis gaditana... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010682NSK010682Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01890.2NO09G01890.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G01890.1NO09G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588861gene_4362Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100069g2gene2941Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01890.2NO09G01890.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G01890.1NO09G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01890 ID=NO09G01890|Name=NO09G01890|organism=Nannochloropsis oceanica|type=gene|length=1074bp
ACAGCCACGTTTCTACCGCGCTCTCCCCCATCAGTTGCCCACAGTCCCAT
CATCATGCGCATCATCGTCATTGCGGCCTTCGTAGCTGgtacgtcgaagg
gaaaaagcttccaaccccctttccgatggccttatttttccgcgttgctt
gaatacaaacacagCCACGACCACGGCCTTCCAGCTCCCCTTGAACTTCC
GCAGCCCTTCCCCTCGGACACAACCACTGGCGGCCTCTCGTAACGACGAC
AACGGCATGGAGAGAAGgtacgtggcggataggttccccccccccccccc
ctttaaacacacacgcttccattcttgtcccacctaccttgttcatccat
agAGAAGTGCTCCAGTATTCTGCCACCGCATTGAGTGCCATGGGTGCCTT
GGGTAGCCTCCTCGCTTCTTTCCCCAGCGCGGCCGGTGCTGCCTCCCCTG
TTATAAGCGAGCTCAAAATTCGGGAGAGTGTCAAGGGGGTTAAAGATAGC
GTGGAAGCTTTAAAGCTGTATGAAGATTTTGTGTCCACTAAGGATTATTA
TGGTATTAAGAAGTCGTTGCGAGTTCCCCCCGTTTCGGAAATTCGAAGGG
ATTGCCGGCGCATCATTGCTGGGTTGGACGGCCCTATCAAAAAGGACACC
GACAAGGCTTATAATCAATTTATTGAAAATCTGGAACAAGTCGACTTCCT
TGCTACCAAAGCAATTCAAAATGATAATAAAGCGGGAGATAAAGAGCTGG
CGCAGATGGCTGCAAGATTCACGGATGCCCAAGTGAAGCTCCAGAAAGTG
TTGGAATTGATTTCGACTACGCGTTATGCGACCGAGCCCGTGAGTGTTCG
GTTGGAAACAGCCAGCACAGAGCTTTAATGCTGGTTGGAAAAATGGTGAG
AATACGTACAATGCGTGTGCGTGCGTGCTTGGATAGGAGGATGTAGATTT
ACTTCTTGAAAGAGGAAGAAAAGGAAGAGGAAGAATAATGATAATGAGTA
GAATAATTACGAGAAGAAAATGAAATGAAAGCCACACCTACTTTTCAAAA
GCGGGAAAAGGAGGAAAGGAGAAT
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protein sequence of NO09G01890.2

>NO09G01890.2-protein ID=NO09G01890.2-protein|Name=NO09G01890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MERREVLQYSATALSAMGALGSLLASFPSAAGAASPVISELKIRESVKGV
KDSVEALKLYEDFVSTKDYYGIKKSLRVPPVSEIRRDCRRIIAGLDGPIK
KDTDKAYNQFIENLEQVDFLATKAIQNDNKAGDKELAQMAARFTDAQVKL
QKVLELISTTRYATEPVSVRLETASTEL*
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protein sequence of NO09G01890.1

>NO09G01890.1-protein ID=NO09G01890.1-protein|Name=NO09G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MRIIVIAAFVAATTTAFQLPLNFRSPSPRTQPLAASRNDDNGMERREVLQ
YSATALSAMGALGSLLASFPSAAGAASPVISELKIRESVKGVKDSVEALK
LYEDFVSTKDYYGIKKSLRVPPVSEIRRDCRRIIAGLDGPIKKDTDKAYN
QFIENLEQVDFLATKAIQNDNKAGDKELAQMAARFTDAQVKLQKVLELIS
TTRYATEPVSVRLETASTEL*
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Synonyms
Publications