NO09G01890.1, NO09G01890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01890.1
Unique NameNO09G01890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length913
Alignment locationchr9:588865..589938 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:588865..589938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01890.1 vs.
Match: EWM27610.1 (PsbQ-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 271.2 bits (692), Expect = 2.900e-69
Identity = 146/219 (66.67%), Postives = 171/219 (78.08%), Query Frame = 0 
Query:    2 RIIVIAAFVAATTTAFQLPLNFRSPSPRTQPLAASRNDDNGMERREVLQYSATALSAMGALGSLLASFPSAAGAASPVISELKIRESVKGVKDSVEALKLYEDFVSTKDYYGIKKSLRVPPVSEIRRDCRRIIAGLDGPIKKDTDKAYNQFIENLEQVDFLATKAIQNDNKAGDKELAQMAARFTDAQVKLQKVLELISTTRYATEPVSVRLETASTEL 221
            R+++I A   A   AF           R        NDDNG ERRE++  + TAL A+GA GS+L S PS AGAASPVISE+KIRESVKGVKDSVEALKLYEDFV+TKD+YG+KKSLRVPPVS+IRRDCRRIIAGL+G +KKDTDKAY++FI +LEQVD LATKAIQND K  D+ELAQ+ ARF +AQ +L KVL+L+ TTRYATEPV+VRLET  TEL
Sbjct:   23 RLLIILAVFLAAIEAFHFSGRNGGFPRRIHRSNTHTNDDNGFERRELIHTATTALGAIGAFGSILLSLPSVAGAASPVISEIKIRESVKGVKDSVEALKLYEDFVNTKDFYGVKKSLRVPPVSDIRRDCRRIIAGLEGSVKKDTDKAYSEFIVSLEQVDLLATKAIQNDQKIKDEELAQLTARFAEAQARLDKVLKLVLTTRYATEPVNVRLETEKTEL 241
The following BLAST results are available for this feature:
BLAST of NO09G01890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27610.12.900e-6966.67PsbQ-like domain protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01890NO09G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01890.1NO09G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01890.1.cds1NO09G01890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01890.1.cds2NO09G01890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01890.1.cds3NO09G01890.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01890.1 ID=NO09G01890.1|Name=NO09G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=913bp
ACAGCCACGTTTCTACCGCGCTCTCCCCCATCAGTTGCCCACAGTCCCAT
CATCATGCGCATCATCGTCATTGCGGCCTTCGTAGCTGCCACGACCACGG
CCTTCCAGCTCCCCTTGAACTTCCGCAGCCCTTCCCCTCGGACACAACCA
CTGGCGGCCTCTCGTAACGACGACAACGGCATGGAGAGAAGAGAAGTGCT
CCAGTATTCTGCCACCGCATTGAGTGCCATGGGTGCCTTGGGTAGCCTCC
TCGCTTCTTTCCCCAGCGCGGCCGGTGCTGCCTCCCCTGTTATAAGCGAG
CTCAAAATTCGGGAGAGTGTCAAGGGGGTTAAAGATAGCGTGGAAGCTTT
AAAGCTGTATGAAGATTTTGTGTCCACTAAGGATTATTATGGTATTAAGA
AGTCGTTGCGAGTTCCCCCCGTTTCGGAAATTCGAAGGGATTGCCGGCGC
ATCATTGCTGGGTTGGACGGCCCTATCAAAAAGGACACCGACAAGGCTTA
TAATCAATTTATTGAAAATCTGGAACAAGTCGACTTCCTTGCTACCAAAG
CAATTCAAAATGATAATAAAGCGGGAGATAAAGAGCTGGCGCAGATGGCT
GCAAGATTCACGGATGCCCAAGTGAAGCTCCAGAAAGTGTTGGAATTGAT
TTCGACTACGCGTTATGCGACCGAGCCCGTGAGTGTTCGGTTGGAAACAG
CCAGCACAGAGCTTTAATGCTGGTTGGAAAAATGGTGAGAATACGTACAA
TGCGTGTGCGTGCGTGCTTGGATAGGAGGATGTAGATTTACTTCTTGAAA
GAGGAAGAAAAGGAAGAGGAAGAATAATGATAATGAGTAGAATAATTACG
AGAAGAAAATGAAATGAAAGCCACACCTACTTTTCAAAAGCGGGAAAAGG
AGGAAAGGAGAAT
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protein sequence of NO09G01890.1

>NO09G01890.1-protein ID=NO09G01890.1-protein|Name=NO09G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MRIIVIAAFVAATTTAFQLPLNFRSPSPRTQPLAASRNDDNGMERREVLQ
YSATALSAMGALGSLLASFPSAAGAASPVISELKIRESVKGVKDSVEALK
LYEDFVSTKDYYGIKKSLRVPPVSEIRRDCRRIIAGLDGPIKKDTDKAYN
QFIENLEQVDFLATKAIQNDNKAGDKELAQMAARFTDAQVKLQKVLELIS
TTRYATEPVSVRLETASTEL*
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mRNA from alignment at chr9:588865..589938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01890.1 ID=NO09G01890.1|Name=NO09G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp|location=Sequence derived from alignment at chr9:588865..589938- (Nannochloropsis oceanica)
ACAGCCACGTTTCTACCGCGCTCTCCCCCATCAGTTGCCCACAGTCCCAT
CATCATGCGCATCATCGTCATTGCGGCCTTCGTAGCTGGTACGTCGAAGG
GAAAAAGCTTCCAACCCCCTTTCCGATGGCCTTATTTTTCCGCGTTGCTT
GAATACAAACACAGCCACGACCACGGCCTTCCAGCTCCCCTTGAACTTCC
GCAGCCCTTCCCCTCGGACACAACCACTGGCGGCCTCTCGTAACGACGAC
AACGGCATGGAGAGAAGGTACGTGGCGGATAGGTTCCCCCCCCCCCCCCC
CTTTAAACACACACGCTTCCATTCTTGTCCCACCTACCTTGTTCATCCAT
AGAGAAGTGCTCCAGTATTCTGCCACCGCATTGAGTGCCATGGGTGCCTT
GGGTAGCCTCCTCGCTTCTTTCCCCAGCGCGGCCGGTGCTGCCTCCCCTG
TTATAAGCGAGCTCAAAATTCGGGAGAGTGTCAAGGGGGTTAAAGATAGC
GTGGAAGCTTTAAAGCTGTATGAAGATTTTGTGTCCACTAAGGATTATTA
TGGTATTAAGAAGTCGTTGCGAGTTCCCCCCGTTTCGGAAATTCGAAGGG
ATTGCCGGCGCATCATTGCTGGGTTGGACGGCCCTATCAAAAAGGACACC
GACAAGGCTTATAATCAATTTATTGAAAATCTGGAACAAGTCGACTTCCT
TGCTACCAAAGCAATTCAAAATGATAATAAAGCGGGAGATAAAGAGCTGG
CGCAGATGGCTGCAAGATTCACGGATGCCCAAGTGAAGCTCCAGAAAGTG
TTGGAATTGATTTCGACTACGCGTTATGCGACCGAGCCCGTGAGTGTTCG
GTTGGAAACAGCCAGCACAGAGCTTTAATGCTGGTTGGAAAAATGGTGAG
AATACGTACAATGCGTGTGCGTGCGTGCTTGGATAGGAGGATGTAGATTT
ACTTCTTGAAAGAGGAAGAAAAGGAAGAGGAAGAATAATGATAATGAGTA
GAATAATTACGAGAAGAAAATGAAATGAAAGCCACACCTACTTTTCAAAA
GCGGGAAAAGGAGGAAAGGAGAAT
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Coding sequence (CDS) from alignment at chr9:588865..589938-

>NO09G01890.1 ID=NO09G01890.1|Name=NO09G01890.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr9:588865..589938- (Nannochloropsis oceanica)
ATGCGCATCATCGTCATTGCGGCCTTCGTAGCTGCCACGACCACGGCCTT
CCAGCTCCCCTTGAACTTCCGCAGCCCTTCCCCTCGGACACAACCACTGG
CGGCCTCTCGTAACGACGACAACGGCATGGAGAGAAGAGAAGTGCTCCAG
TATTCTGCCACCGCATTGAGTGCCATGGGTGCCTTGGGTAGCCTCCTCGC
TTCTTTCCCCAGCGCGGCCGGTGCTGCCTCCCCTGTTATAAGCGAGCTCA
AAATTCGGGAGAGTGTCAAGGGGGTTAAAGATAGCGTGGAAGCTTTAAAG
CTGTATGAAGATTTTGTGTCCACTAAGGATTATTATGGTATTAAGAAGTC
GTTGCGAGTTCCCCCCGTTTCGGAAATTCGAAGGGATTGCCGGCGCATCA
TTGCTGGGTTGGACGGCCCTATCAAAAAGGACACCGACAAGGCTTATAAT
CAATTTATTGAAAATCTGGAACAAGTCGACTTCCTTGCTACCAAAGCAAT
TCAAAATGATAATAAAGCGGGAGATAAAGAGCTGGCGCAGATGGCTGCAA
GATTCACGGATGCCCAAGTGAAGCTCCAGAAAGTGTTGGAATTGATTTCG
ACTACGCGTTATGCGACCGAGCCCGTGAGTGTTCGGTTGGAAACAGCCAG
CACAGAGCTTTAA
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Synonyms
Publications