NO09G01300, NO09G01300 (gene) Nannochloropsis oceanica

Overview
NameNO09G01300
Unique NameNO09G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1498
Alignment locationchr9:431817..433314 +

Link to JBrowse

Properties
Property NameValue
DescriptionSEC-C motif-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:431817..433314 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain_like_cys_pep_sf
IPR003323OTU_dom
Homology
BLAST of NO09G01300 vs. NCBI_GenBank
Match: EWM27659.1 (SEC-C motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 335.9 bits (860), Expect = 1.600e-88
Identity = 189/367 (51.50%), Postives = 229/367 (62.40%), Query Frame = 0
Query:    1 MGKRGTGLGRRKSSIGSHSRKDEFSGQPAAGEHRNIGKQQRSKGKRFGKDEEQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPRFEFSYKTTAQTVHLSFHGDAHYNSVRAMDDPCREGEPAKAFMNLTAKPFAA--CSSXXXXXXXXXXXXXXXXXXXIKASEIQRPQEFELQYGEENDNMTGIEGSGGDXXXXXXXXXXXXXXXXDERWEAGMITKVGGQCPCGSGKKWRKCCRKAERQRERYMNGGWVGSRTGQKQWQSRPLQQRHTEGNDGNDTESTRMLTQKLAAIAL 366
            MGKRG GL RRK ++GSHSRKDE+   P      N GKQQ+ KGKRF KDEEQRF Q V +LGARI  M SDGNCLFRALADQLRGRP+DHGE+RQH+ DF+E HE DFAPFVEDDEK+SDYV RMR EG+WGGQQEICAASRCF +NVVIHQLD PRFE  +K +A T+HLSFHG +HYNS+RA DDPCR G+PAK F+ LTA P +    S+                   I  +EI+       + G+E+D    +                      + R     + K GGQCPC SGKKWRKCCRK ERQR+R+++        G    +   + + H +   G +      L  +LAAI+L
Sbjct:    1 MGKRGPGLVRRKGNMGSHSRKDEYITAPEG--RWNGGKQQKQKGKRFDKDEEQRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEILFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLALTALPLSTSKTSTLTSFSSSPSLAPHRREGKSIPGAEIK-------ERGDEDDE---LRRKTRKEMADISDESDGSIDRDEPRATEEKVLKRGGQCPCRSGKKWRKCCRKVERQRQRHIH-----HMNGYNAMRHEQVHEEHVKNGIGEE-----KLAVRLAAISL 345          
BLAST of NO09G01300 vs. NCBI_GenBank
Match: CBJ28337.1 (OTU domain-containing protein, putative [Ectocarpus siliculosus])

HSP 1 Score: 148.3 bits (373), Expect = 4.700e-32
Identity = 103/337 (30.56%), Postives = 152/337 (45.10%), Query Frame = 0
Query:    1 MGKRGTGLGRRKSSIGSHSRKDEFSGQPAAGEHRNIGKQQRSKGKRFGKDEEQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPRFEFSYKTTAQTVHLSFHGDAHYNSVRAMDDPCR--------EGEPAKAFMNLTAKPF------AACSSXXXXXXXXXXXXXXXXXXXIKASEIQRPQEFELQYGEENDNMTGIEGSGG--DXXXXXXXXXXXXXXXXDERWEAGMITKV----------GGQCPCGSGKKWRKCCRKAE 312
            MGK G    +R S+ G  + K +        E   + K +          +++ FE QV ++G +I  +  DGNCLFR+LADQL GR +DH  +R  + D ++ + E F P++EDDE + DY+ RMR E +WGG QE+ AAS+ ++ NVV+HQ   PRF    +   +T+HLS+HG+ HYNSVRA+ D           +   +K   +    P+       A S                      A E+      E    E  DN  G +   G  +                + +   G + K              CPCGSG K++KCCRK +
Sbjct:    1 MGKHGK---QRGSAAGQQADKAK-----ERNERARLRKDRMRNSLYSSSADDRDFEAQVEQIGCKIKFIQGDGNCLFRSLADQLEGRSEDHSSVRAKVMDHLQRNREVFEPYMEDDETFGDYLERMRGEAEWGGNQELVAASQLYKTNVVVHQFKAPRFFIPCEKARRTIHLSYHGEHHYNSVRAIGDEANGPALPITLQTPTSKGGSHKRESPWPEEEAAVARSCPWASPPNIVAALETTGGRGDDAIELLIAARNEPGLEEGVDNTAGDKKGTGKLEDGGDSGEKPQENGRPGEGKGRGGGVAKKSEKAAKKVARASDCPCGSGLKYKKCCRKKD 329          
BLAST of NO09G01300 vs. NCBI_GenBank
Match: KXZ46175.1 (hypothetical protein GPECTOR_46g244 [Gonium pectorale])

HSP 1 Score: 140.2 bits (352), Expect = 1.300e-29
Identity = 73/167 (43.71%), Postives = 98/167 (58.68%), Query Frame = 0
Query:   38 KQQRSKGKRFGK------DEEQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPRFEF--SYKTTAQTVHLSFHGDAHYNSVRAMDDPCREGEPA 197
            K  + KGKR GK            E ++A LG RI  +  DGNC FRAL+DQL+G  + HG++R  +  ++ EH++DFAPF+EDDE +  YV RMR +G W G  E+ AASRC   N+ I+Q   PR+      +  A  +HLS+H   HYNSVR  DD     +PA
Sbjct:   36 KATKDKGKRAGKGAWHVSSGGDDLEAELASLGLRIKEIVGDGNCFFRALSDQLQGDEKSHGQLRARVVGYIGEHQDDFAPFIEDDESFGSYVARMRKDGTWAGYMEVVAASRCLEANLTIYQAGQPRWRVLSQPEDAAPMLHLSYHDGQHYNSVRCADDFSSGTKPA 202          
BLAST of NO09G01300 vs. NCBI_GenBank
Match: CDW88215.1 (UNKNOWN [Stylonychia lemnae])

HSP 1 Score: 138.3 bits (347), Expect = 4.900e-29
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = 0
Query:   54 RFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPRFEFSYKT--TAQTVHLSFHGDAHYNSVRAMDDPC 191
            +F  Q+A+ G ++  M +DGNCLFR+LADQL G  + H + RQ   DF+E+++E +APF+EDDE    Y+  M  E  WGGQ E+ A S  ++ N ++HQ+DNP   FS     T  T+H+S+H   HYNSVR ++DPC
Sbjct:    3 KFRTQLAQYGLKVKEMGADGNCLFRSLADQLEGNEKLHRKYRQEACDFIEQNKEQYAPFIEDDETIDQYLEDMNKESTWGGQLELQALSLLYKFNYIVHQVDNPSMAFSSFDWGTVPTLHISYHLGEHYNSVRLIEDPC 141          
BLAST of NO09G01300 vs. NCBI_GenBank
Match: XP_001700932.1 (predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 135.2 bits (339), Expect = 4.100e-28
Identity = 66/139 (47.48%), Postives = 87/139 (62.59%), Query Frame = 0
Query:   52 EQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPRFEFSY--KTTAQTVHLSFHGDAHYNSVRAMDD 189
            E   E ++A LG RI  +  DGNC FRAL DQL+G  + H E+R  I  FM +HEE+FAPFVEDDE +  YV RM+ +G W G  E+ AASRC   N+ I+Q   PR+   +  + TA  +HL++    HY+SVR  DD
Sbjct:   60 EADLETELAALGLRIKDITGDGNCFFRALGDQLKGEEKVHAELRARIVGFMADHEEEFAPFVEDDESFGSYVARMKKDGTWAGYMEVVAASRCLGANLTIYQAGQPRWRVVHHPEDTAPMLHLAYSDGQHYDSVRCADD 198          
BLAST of NO09G01300 vs. NCBI_GenBank
Match: PNW83370.1 (hypothetical protein CHLRE_05g246050v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 135.2 bits (339), Expect = 4.100e-28
Identity = 66/139 (47.48%), Postives = 87/139 (62.59%), Query Frame = 0
Query:   52 EQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPRFEFSY--KTTAQTVHLSFHGDAHYNSVRAMDD 189
            E   E ++A LG RI  +  DGNC FRAL DQL+G  + H E+R  I  FM +HEE+FAPFVEDDE +  YV RM+ +G W G  E+ AASRC   N+ I+Q   PR+   +  + TA  +HL++    HY+SVR  DD
Sbjct:   49 EADLETELAALGLRIKDITGDGNCFFRALGDQLKGEEKVHAELRARIVGFMADHEEEFAPFVEDDESFGSYVARMKKDGTWAGYMEVVAASRCLGANLTIYQAGQPRWRVVHHPEDTAPMLHLAYSDGQHYDSVRCADD 187          
BLAST of NO09G01300 vs. NCBI_GenBank
Match: PNW83369.1 (hypothetical protein CHLRE_05g246050v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 135.2 bits (339), Expect = 4.100e-28
Identity = 66/139 (47.48%), Postives = 87/139 (62.59%), Query Frame = 0
Query:   52 EQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPRFEFSY--KTTAQTVHLSFHGDAHYNSVRAMDD 189
            E   E ++A LG RI  +  DGNC FRAL DQL+G  + H E+R  I  FM +HEE+FAPFVEDDE +  YV RM+ +G W G  E+ AASRC   N+ I+Q   PR+   +  + TA  +HL++    HY+SVR  DD
Sbjct:   49 EADLETELAALGLRIKDITGDGNCFFRALGDQLKGEEKVHAELRARIVGFMADHEEEFAPFVEDDESFGSYVARMKKDGTWAGYMEVVAASRCLGANLTIYQAGQPRWRVVHHPEDTAPMLHLAYSDGQHYDSVRCADD 187          
BLAST of NO09G01300 vs. NCBI_GenBank
Match: XP_002899322.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY62291.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 131.7 bits (330), Expect = 4.500e-27
Identity = 62/138 (44.93%), Postives = 94/138 (68.12%), Query Frame = 0
Query:   57 QQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPR-----FEFSYKTTAQTVHLSFHGDAHYNSVRAMDDP 190
            +++A++G ++  + +DGNCLFRALADQL G    H ++R+ I  ++E+H +DF PF+ED+EK+  Y  RMR +G WGG QE+ AA+R F++ VV+HQ D P       E       + VH+++HG+ HY+SVRA+ DP
Sbjct:    3 RKLADVGCKLHEVEADGNCLFRALADQLYGDQHQHEDVREKIVSYLEQHRDDFEPFMEDEEKFEKYCARMREDGTWGGNQELYAAARLFQVYVVVHQ-DQPSARIMVIECDRLRPTRFVHVAYHGEDHYDSVRALKDP 139          
BLAST of NO09G01300 vs. NCBI_GenBank
Match: GAX97773.1 (Hypothetical protein PINS_005641 [Pythium insidiosum])

HSP 1 Score: 130.6 bits (327), Expect = 1.000e-26
Identity = 69/172 (40.12%), Postives = 106/172 (61.63%), Query Frame = 0
Query:   34 RNIGKQQRSKGK-RFGKDEEQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPR--FEFSYKTTAQTVHLSFHGDAHYNSVRAMDDPCREGEPAKAFMNL 203
            RN GK+ R   K +   D  +   + +A +G ++  + +DGNCLFRAL DQL G  Q H E+R+ + D++E   +DF PF+ED+EK+ +Y  RMR +G WGG QEI AA+R F + +VIHQ ++ R   E   +   + VHL++HG  HY+SVR++ D      P +  +++
Sbjct:   34 RNKGKRGRKSVKFQVDDDSVKLMRKNLAAIGCKLHEVEADGNCLFRALGDQLYGDQQQHDEIRKRVVDYIESKRDDFEPFMEDEEKFENYCRRMREDGTWGGNQEIYAAARLFTMYIVIHQ-EHTRVVIECDTQKPTRVVHLAYHGSDHYDSVRSLRDADTNAPPIEVVLDI 204          
BLAST of NO09G01300 vs. NCBI_GenBank
Match: ETI48653.1 (hypothetical protein F443_07356 [Phytophthora parasitica P1569] >ETM48332.1 hypothetical protein L914_07124 [Phytophthora parasitica] >ETO77378.1 hypothetical protein F444_07420 [Phytophthora parasitica P1976])

HSP 1 Score: 130.2 bits (326), Expect = 1.300e-26
Identity = 66/157 (42.04%), Postives = 99/157 (63.06%), Query Frame = 0
Query:   38 KQQRSKGKRFGKDEEQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPR-----FEFSYKTTAQTVHLSFHGDAHYNSVRAMDDP 190
            K+Q+S          +   +Q+A++G ++  + +DGNCLFRAL DQL G    H E+R+ I  ++E+H +DF PF+ED+EK+  Y  RMR +G WGG QE+ AA+R F++ VV+HQ D P       E       + VH+++HG+ HY+SVRA+ DP
Sbjct:   39 KKQKSASYVVDDGAIELMRRQLADVGCKLHEVEADGNCLFRALGDQLYGDQHQHEEVRKKIVSYLEQHRDDFEPFMEDEEKFEKYCERMREDGTWGGNQELYAAARLFQVYVVVHQ-DQPSARIMVIECDRLKPTRFVHVAYHGEDHYDSVRALKDP 194          
The following BLAST results are available for this feature:
BLAST of NO09G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27659.11.600e-8851.50SEC-C motif-containing protein [Nannochloropsis ga... [more]
CBJ28337.14.700e-3230.56OTU domain-containing protein, putative [Ectocarpu... [more]
KXZ46175.11.300e-2943.71hypothetical protein GPECTOR_46g244 [Gonium pector... [more]
CDW88215.14.900e-2946.04UNKNOWN [Stylonychia lemnae][more]
XP_001700932.14.100e-2847.48predicted protein, partial [Chlamydomonas reinhard... [more]
PNW83370.14.100e-2847.48hypothetical protein CHLRE_05g246050v5 [Chlamydomo... [more]
PNW83369.14.100e-2847.48hypothetical protein CHLRE_05g246050v5 [Chlamydomo... [more]
XP_002899322.14.500e-2744.93conserved hypothetical protein [Phytophthora infes... [more]
GAX97773.11.000e-2640.12Hypothetical protein PINS_005641 [Pythium insidios... [more]
ETI48653.11.300e-2642.04hypothetical protein F443_07356 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010620NSK010620Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01300.1NO09G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589059gene_4424Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100059g4gene2903Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01300.1NO09G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01300 ID=NO09G01300|Name=NO09G01300|organism=Nannochloropsis oceanica|type=gene|length=1498bp
ACAGTATAAAGGGTACGCTGCGGTGGTAGCGACGTTGGCTGGGAGCCAGG
TCTTGCCCCCCTCTTGAGTCCTCCCGGCCCAGCTTGCCCTGCCATCCTTT
ATATACCCCCTGTAGCACTCCGGCCACCATGGGCAAAAGGGGCACTGGAC
TGGGCCGTCGGAAGAGCAGCATTGGAAGCCACTCGCGGAAGGATGAATTT
TCGGGGCAACCGGCAGCGGGGGAGCATAGGAACATTGGAAAGCAGCAACG
Ggtatgtcctttgcgaattagtgtggaaagcgtagacagcgtgcccattc
ccggcaagatgtcagtgcatggctcctgagaagcaatttgatgcatcatc
tctcttgtgtcacgcgcatatctacgacatttccttgactaaaaaacata
tcctatcctttcttgtccccaaaacaaaacaagTCCAAAGGCAAACGCTT
CGGAAAGGACGAGGAGCAGCGTTTCGAGCAGCAAGTCGCCGAGTTGGGTG
CCCGCATCGCCATCATGGCATCGGATGGGAACTGTCTCTTTCGTGCCTTA
GCTGACCAATTAAGGGGACGACCTCAGGATCATGGGGAAATGAGACAGCA
CATTGGTGATTTTATGGAGGAGCATGAGGAGGACTTTGCGCCATTTGTGG
AGGACGATGAGAAGTGGTCCGATTACGTTCCGCGCATGCGGTGCGAGGGA
CAGTGGGGAGGGCAGCAGGAGATATGTGCGGCGAGTCGTTGTTTTCGAAT
CAATGTGGTGATTCATCAATTGGATAACCCCCGCTTTGAGTTTTCTTACA
AGACCACAGCCCAAACAGTTCATTTGTCTTTTCACGGGGACGCGCACTAC
AACAGCGTCCGCGCGATGGACGATCCATGCCGGGAAGGTGAACCTGCGAA
AGCCTTTATGAATCTAACTGCCAAGCCTTTCGCAGCATGTAGCTCCTCCA
CCTCCCCGAACACCTCGCCCTCAACCAGGTCTTCGTCCTCCTCGCATCGA
AGGATCAAGGCGAGCGAAATCCAGCGACCACAAGAATTCGAGTTACAATA
TGGAGAAGAAAATGATAACATGACAGGGATCGAAGGATCGGGTGGTGACA
GTGACGGCCAGGGTAACGAAGAAGATGGCGAGGGGGAAGGCGAAGTGGAC
GAGAGATGGGAAGCGGGCATGATAACCAAAGTGGGGGGTCAATGTCCGTG
TGGGTCGGGAAAGAAGTGGCGCAAATGCTGCCGGAAAGCAGAAAGACAAC
GCGAGCGTTACATGAATGGTGGTTGGGTCGGGTCGCGCACAGGTCAGAAG
CAGTGGCAGTCGCGTCCCCTGCAGCAGCGGCATACCGAAGGTAACGATGG
AAATGACACGGAGAGCACAAGGATGTTGACACAGAAGCTGGCGGCGATCG
CATTGTAAAATTGATAGGTCTGTATGCACAAGTAGCGAATGGAATCGATT
CGACTGTAAAGAATGAACAAGGCGGAATAGGCCTGGAATTCACTCCTA
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protein sequence of NO09G01300.1

>NO09G01300.1-protein ID=NO09G01300.1-protein|Name=NO09G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MGKRGTGLGRRKSSIGSHSRKDEFSGQPAAGEHRNIGKQQRSKGKRFGKD
EEQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGD
FMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVV
IHQLDNPRFEFSYKTTAQTVHLSFHGDAHYNSVRAMDDPCREGEPAKAFM
NLTAKPFAACSSSTSPNTSPSTRSSSSSHRRIKASEIQRPQEFELQYGEE
NDNMTGIEGSGGDSDGQGNEEDGEGEGEVDERWEAGMITKVGGQCPCGSG
KKWRKCCRKAERQRERYMNGGWVGSRTGQKQWQSRPLQQRHTEGNDGNDT
ESTRMLTQKLAAIAL*
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Synonyms
Publications