NO09G01300.1, NO09G01300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01300.1
Unique NameNO09G01300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1316
Alignment locationchr9:431817..433314 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:431817..433314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01300.1 vs.
Match: EWM27659.1 (SEC-C motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 339.7 bits (870), Expect = 1.100e-89
Identity = 201/369 (54.47%), Postives = 248/369 (67.21%), Query Frame = 0 
Query:    1 MGKRGTGLGRRKSSIGSHSRKDEFSGQPAAGEHRNIGKQQRSKGKRFGKDEEQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGDFMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVVIHQLDNPRFEFSYKTTAQTVHLSFHGDAHYNSVRAMDDPCREGEPAKAFMNLTAKPFAACSSSTSPNTSPSTRSSSSSHRR----IKASEIQRPQEFELQYGEENDNMTGIEGSGGDSDGQGNEEDGEGEGEVDERWEAGMITKVGGQCPCGSGKKWRKCCRKAERQRERYMNGGWVGSRTGQKQWQSRPLQQRHTEGNDGNDTESTRMLTQKLAAIAL 366
            MGKRG GL RRK ++GSHSRKDE+   P      N GKQQ+ KGKRF KDEEQRF Q V +LGARI  M SDGNCLFRALADQLRGRP+DHGE+RQH+ DF+E HE DFAPFVEDDEK+SDYV RMR EG+WGGQQEICAASRCF +NVVIHQLD PRFE  +K +A T+HLSFHG +HYNS+RA DDPCR G+PAK F+ LTA P +  +S TS  TS S+  S + HRR    I  +EI+       + G+E+D +     +  +     +E DG  + + + R     + K GGQCPC SGKKWRKCCRK ERQR+R+++        G    +   + + H +   G +      L  +LAAI+L
Sbjct:    1 MGKRGPGLVRRKGNMGSHSRKDEYITAPEG--RWNGGKQQKQKGKRFDKDEEQRFMQHVEDLGARILTMDSDGNCLFRALADQLRGRPEDHGEIRQHVIDFIEAHETDFAPFVEDDEKFSDYVHRMRNEGEWGGQQEICAASRCFHVNVVIHQLDCPRFEILFKASAPTIHLSFHGASHYNSIRAWDDPCRMGDPAKPFLALTALPLS--TSKTSTLTSFSSSPSLAPHRREGKSIPGAEIK-------ERGDEDDELR--RKTRKEMADISDESDGSIDRD-EPRATEEKVLKRGGQCPCRSGKKWRKCCRKVERQRQRHIH-----HMNGYNAMRHEQVHEEHVKNGIGEE-----KLAVRLAAISL 345
The following BLAST results are available for this feature:
BLAST of NO09G01300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27659.11.100e-8954.47SEC-C motif-containing protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01300NO09G01300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01300.1NO09G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01300.1.cds1NO09G01300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01300.1.cds2NO09G01300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01300.1 ID=NO09G01300.1|Name=NO09G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1316bp
ACAGTATAAAGGGTACGCTGCGGTGGTAGCGACGTTGGCTGGGAGCCAGG
TCTTGCCCCCCTCTTGAGTCCTCCCGGCCCAGCTTGCCCTGCCATCCTTT
ATATACCCCCTGTAGCACTCCGGCCACCATGGGCAAAAGGGGCACTGGAC
TGGGCCGTCGGAAGAGCAGCATTGGAAGCCACTCGCGGAAGGATGAATTT
TCGGGGCAACCGGCAGCGGGGGAGCATAGGAACATTGGAAAGCAGCAACG
GTCCAAAGGCAAACGCTTCGGAAAGGACGAGGAGCAGCGTTTCGAGCAGC
AAGTCGCCGAGTTGGGTGCCCGCATCGCCATCATGGCATCGGATGGGAAC
TGTCTCTTTCGTGCCTTAGCTGACCAATTAAGGGGACGACCTCAGGATCA
TGGGGAAATGAGACAGCACATTGGTGATTTTATGGAGGAGCATGAGGAGG
ACTTTGCGCCATTTGTGGAGGACGATGAGAAGTGGTCCGATTACGTTCCG
CGCATGCGGTGCGAGGGACAGTGGGGAGGGCAGCAGGAGATATGTGCGGC
GAGTCGTTGTTTTCGAATCAATGTGGTGATTCATCAATTGGATAACCCCC
GCTTTGAGTTTTCTTACAAGACCACAGCCCAAACAGTTCATTTGTCTTTT
CACGGGGACGCGCACTACAACAGCGTCCGCGCGATGGACGATCCATGCCG
GGAAGGTGAACCTGCGAAAGCCTTTATGAATCTAACTGCCAAGCCTTTCG
CAGCATGTAGCTCCTCCACCTCCCCGAACACCTCGCCCTCAACCAGGTCT
TCGTCCTCCTCGCATCGAAGGATCAAGGCGAGCGAAATCCAGCGACCACA
AGAATTCGAGTTACAATATGGAGAAGAAAATGATAACATGACAGGGATCG
AAGGATCGGGTGGTGACAGTGACGGCCAGGGTAACGAAGAAGATGGCGAG
GGGGAAGGCGAAGTGGACGAGAGATGGGAAGCGGGCATGATAACCAAAGT
GGGGGGTCAATGTCCGTGTGGGTCGGGAAAGAAGTGGCGCAAATGCTGCC
GGAAAGCAGAAAGACAACGCGAGCGTTACATGAATGGTGGTTGGGTCGGG
TCGCGCACAGGTCAGAAGCAGTGGCAGTCGCGTCCCCTGCAGCAGCGGCA
TACCGAAGGTAACGATGGAAATGACACGGAGAGCACAAGGATGTTGACAC
AGAAGCTGGCGGCGATCGCATTGTAAAATTGATAGGTCTGTATGCACAAG
TAGCGAATGGAATCGATTCGACTGTAAAGAATGAACAAGGCGGAATAGGC
CTGGAATTCACTCCTA
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protein sequence of NO09G01300.1

>NO09G01300.1-protein ID=NO09G01300.1-protein|Name=NO09G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MGKRGTGLGRRKSSIGSHSRKDEFSGQPAAGEHRNIGKQQRSKGKRFGKD
EEQRFEQQVAELGARIAIMASDGNCLFRALADQLRGRPQDHGEMRQHIGD
FMEEHEEDFAPFVEDDEKWSDYVPRMRCEGQWGGQQEICAASRCFRINVV
IHQLDNPRFEFSYKTTAQTVHLSFHGDAHYNSVRAMDDPCREGEPAKAFM
NLTAKPFAACSSSTSPNTSPSTRSSSSSHRRIKASEIQRPQEFELQYGEE
NDNMTGIEGSGGDSDGQGNEEDGEGEGEVDERWEAGMITKVGGQCPCGSG
KKWRKCCRKAERQRERYMNGGWVGSRTGQKQWQSRPLQQRHTEGNDGNDT
ESTRMLTQKLAAIAL*
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mRNA from alignment at chr9:431817..433314+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01300.1 ID=NO09G01300.1|Name=NO09G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp|location=Sequence derived from alignment at chr9:431817..433314+ (Nannochloropsis oceanica)
ACAGTATAAAGGGTACGCTGCGGTGGTAGCGACGTTGGCTGGGAGCCAGG
TCTTGCCCCCCTCTTGAGTCCTCCCGGCCCAGCTTGCCCTGCCATCCTTT
ATATACCCCCTGTAGCACTCCGGCCACCATGGGCAAAAGGGGCACTGGAC
TGGGCCGTCGGAAGAGCAGCATTGGAAGCCACTCGCGGAAGGATGAATTT
TCGGGGCAACCGGCAGCGGGGGAGCATAGGAACATTGGAAAGCAGCAACG
GGTATGTCCTTTGCGAATTAGTGTGGAAAGCGTAGACAGCGTGCCCATTC
CCGGCAAGATGTCAGTGCATGGCTCCTGAGAAGCAATTTGATGCATCATC
TCTCTTGTGTCACGCGCATATCTACGACATTTCCTTGACTAAAAAACATA
TCCTATCCTTTCTTGTCCCCAAAACAAAACAAGTCCAAAGGCAAACGCTT
CGGAAAGGACGAGGAGCAGCGTTTCGAGCAGCAAGTCGCCGAGTTGGGTG
CCCGCATCGCCATCATGGCATCGGATGGGAACTGTCTCTTTCGTGCCTTA
GCTGACCAATTAAGGGGACGACCTCAGGATCATGGGGAAATGAGACAGCA
CATTGGTGATTTTATGGAGGAGCATGAGGAGGACTTTGCGCCATTTGTGG
AGGACGATGAGAAGTGGTCCGATTACGTTCCGCGCATGCGGTGCGAGGGA
CAGTGGGGAGGGCAGCAGGAGATATGTGCGGCGAGTCGTTGTTTTCGAAT
CAATGTGGTGATTCATCAATTGGATAACCCCCGCTTTGAGTTTTCTTACA
AGACCACAGCCCAAACAGTTCATTTGTCTTTTCACGGGGACGCGCACTAC
AACAGCGTCCGCGCGATGGACGATCCATGCCGGGAAGGTGAACCTGCGAA
AGCCTTTATGAATCTAACTGCCAAGCCTTTCGCAGCATGTAGCTCCTCCA
CCTCCCCGAACACCTCGCCCTCAACCAGGTCTTCGTCCTCCTCGCATCGA
AGGATCAAGGCGAGCGAAATCCAGCGACCACAAGAATTCGAGTTACAATA
TGGAGAAGAAAATGATAACATGACAGGGATCGAAGGATCGGGTGGTGACA
GTGACGGCCAGGGTAACGAAGAAGATGGCGAGGGGGAAGGCGAAGTGGAC
GAGAGATGGGAAGCGGGCATGATAACCAAAGTGGGGGGTCAATGTCCGTG
TGGGTCGGGAAAGAAGTGGCGCAAATGCTGCCGGAAAGCAGAAAGACAAC
GCGAGCGTTACATGAATGGTGGTTGGGTCGGGTCGCGCACAGGTCAGAAG
CAGTGGCAGTCGCGTCCCCTGCAGCAGCGGCATACCGAAGGTAACGATGG
AAATGACACGGAGAGCACAAGGATGTTGACACAGAAGCTGGCGGCGATCG
CATTGTAAAATTGATAGGTCTGTATGCACAAGTAGCGAATGGAATCGATT
CGACTGTAAAGAATGAACAAGGCGGAATAGGCCTGGAATTCACTCCTA
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Coding sequence (CDS) from alignment at chr9:431817..433314+

>NO09G01300.1 ID=NO09G01300.1|Name=NO09G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr9:431817..433314+ (Nannochloropsis oceanica)
ATGGGCAAAAGGGGCACTGGACTGGGCCGTCGGAAGAGCAGCATTGGAAG
CCACTCGCGGAAGGATGAATTTTCGGGGCAACCGGCAGCGGGGGAGCATA
GGAACATTGGAAAGCAGCAACGGTCCAAAGGCAAACGCTTCGGAAAGGAC
GAGGAGCAGCGTTTCGAGCAGCAAGTCGCCGAGTTGGGTGCCCGCATCGC
CATCATGGCATCGGATGGGAACTGTCTCTTTCGTGCCTTAGCTGACCAAT
TAAGGGGACGACCTCAGGATCATGGGGAAATGAGACAGCACATTGGTGAT
TTTATGGAGGAGCATGAGGAGGACTTTGCGCCATTTGTGGAGGACGATGA
GAAGTGGTCCGATTACGTTCCGCGCATGCGGTGCGAGGGACAGTGGGGAG
GGCAGCAGGAGATATGTGCGGCGAGTCGTTGTTTTCGAATCAATGTGGTG
ATTCATCAATTGGATAACCCCCGCTTTGAGTTTTCTTACAAGACCACAGC
CCAAACAGTTCATTTGTCTTTTCACGGGGACGCGCACTACAACAGCGTCC
GCGCGATGGACGATCCATGCCGGGAAGGTGAACCTGCGAAAGCCTTTATG
AATCTAACTGCCAAGCCTTTCGCAGCATGTAGCTCCTCCACCTCCCCGAA
CACCTCGCCCTCAACCAGGTCTTCGTCCTCCTCGCATCGAAGGATCAAGG
CGAGCGAAATCCAGCGACCACAAGAATTCGAGTTACAATATGGAGAAGAA
AATGATAACATGACAGGGATCGAAGGATCGGGTGGTGACAGTGACGGCCA
GGGTAACGAAGAAGATGGCGAGGGGGAAGGCGAAGTGGACGAGAGATGGG
AAGCGGGCATGATAACCAAAGTGGGGGGTCAATGTCCGTGTGGGTCGGGA
AAGAAGTGGCGCAAATGCTGCCGGAAAGCAGAAAGACAACGCGAGCGTTA
CATGAATGGTGGTTGGGTCGGGTCGCGCACAGGTCAGAAGCAGTGGCAGT
CGCGTCCCCTGCAGCAGCGGCATACCGAAGGTAACGATGGAAATGACACG
GAGAGCACAAGGATGTTGACACAGAAGCTGGCGGCGATCGCATTGTAA
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Synonyms
Publications