NO09G01030, NO09G01030 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G01030
Unique Name	NO09G01030
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3952
Alignment location	chr9:344876..348827 +

Link to JBrowse

Properties


Property Name	Value
Description	Zn(2)-C6 fungal-type DNA-binding domain protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:344876..348827 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006357	regulation of transcription by RNA polymerase II
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270	zinc ion binding
GO:0008270	zinc ion binding
GO:0003677	DNA binding
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific

Vocabulary: **INTERPRO**
Term	Definition
IPR036864	Zn2-C6_fun-type_DNA-bd_sf
IPR001138	Zn2-C6_fun-type_DNA-bd

Homology

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BLAST of NO09G01030 vs. NCBI_GenBank
Match: EWM27679.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 704.1 bits (1816), Expect = 6.400e-199
Identity = 490/759 (64.56%), Postives = 534/759 (70.36%), Query Frame = 0

Query:    1 MTTLLGQPPSSLGAMGSAFYDEDAQSVVALGQHAAGSGTEDEMDTDHFDELDRIIFDMPYVSEQDPLSSCSVGGQSQGQTNGQGHGHQERGASQHGGAGLLMPNPHNGH--IHGDGGHHINHNNHGSVRGGGMDWHAKEEDASYHTAVDSSCHTDRSYHRVDAXXXXXXXXXXXXXXXXXXXXXXIDSSGHYDDFAAHKGDPRYMEHSCEACKRSKKRCNRRNPCQICTSRGIKCVPQIRGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGLLQXXXXXXXXXXXXXXXXSPPRDPWHCRFFFEAARHCKEAFLKAWHDNELDTSKCIMLRNLWTKTSSILASGVDMTFGICDQLQEVVGPAPTGSGPIACSPATRSKSQAAQQAQLLSHPGSKEGMGPWNLPDDLRKMDDGVSMLCGFMFIQDELFVFTDERFAATFMTREEVEGKVESFAVLPILLLAEIFHPDDLPDVYAAIGAHWFRRRPSSGVGVGGSNGSISSXXXXXXXXXXXXXXXXXXXXXEVPEAAWICKCIDKRNTEITALVRFRSFAAPTEGYAGAAMLSILPLTRSKYIADPDVQTNMRSGVSSRHHLRDTFGALPTALPEHXXXXXXXXXXXXXXXXXGERVGASGHGQDLLNEEEDDEIFLDAHGDDAMFRPLRRGMTVLSAETSGPQPVPLSKHASDPLPHHNEHHFHSQPQHTSSHLSSLSSMASHQTGVSWGG 758
            MTT L   P+    +GS  + E +  VV   +   G G++DEMDTDHF+ELD  IFD+ Y +EQDP       G                  +Q GGA LLMP+PHN H  I  DG     HN+       GMDW AK+ED SYHTAVD+SCH D SYH VDAXXXXXXXXXXXXXXXXXXXXXX DSSGHYDD+ AHKGD RYMEHSCEACKRSKKRCNRRNPCQICTSRGIKCVPQIRGPG                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGLLQ                SPPRDPWHCRFFFEAARHCKEAFL+ WHDNELDT+KCIMLRNLWTK SS LASG DMTFGICDQLQEVVGPAPTGSGP+A SPATRSKS AAQQAQLL+HPGSKE MGP  LP DLR+M+DGVSMLCGFMF+QDELFV+TDERFAATFMTREEVE KV S AVLPILLLAEIFHPDDLPD+YAAIGA+WF R                 XXXXXXXXXXXXXXXX       PEA+WICKCIDK NTE+TA VRFRSF AP EGY GAAMLSILPL  SKY+ADPD + ++RSGVSSR  +RDTFGALPTALPE                   +R+   G G     E +D E       DDA+FRPLRRGMTVLS ETSGPQ VP++K  SDP   H +H  +SQP   + H+S LSS      G+SWGG
Sbjct:   78 MTTFLNPGPAREKLVGSGVFFEGSIGVVG-HESGGGVGSQDEMDTDHFNELDH-IFDLSYSAEQDPF------GSXXXXXXXXXXXXXXPPQTQLGGASLLMPHPHNSHGAISHDGSR--MHND-------GMDWRAKDEDCSYHTAVDASCHIDSSYHHVDAXXXXXXXXXXXXXXXXXXXXXXXDSSGHYDDYLAHKGDARYMEHSCEACKRSKKRCNRRNPCQICTSRGIKCVPQIRGPG----RPPGSKSSRGCTSLSLSSSRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGLLQ----QGQELAVGARRHSPPRDPWHCRFFFEAARHCKEAFLRTWHDNELDTAKCIMLRNLWTKVSSQLASGTDMTFGICDQLQEVVGPAPTGSGPMAGSPATRSKSHAAQQAQLLTHPGSKEAMGPHCLPLDLRRMEDGVSMLCGFMFLQDELFVYTDERFAATFMTREEVESKVGSLAVLPILLLAEIFHPDDLPDIYAAIGAYWFSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----TPEASWICKCIDKANTEVTAFVRFRSFVAPAEGYPGAAMLSILPLKPSKYLADPDTKGSVRSGVSSRLQMRDTFGALPTALPEQDDEDLGDDLVGRRPSV--DRMEGLGPG---AGEGQDPE------SDDALFRPLRRGMTVLSDETSGPQAVPVAKQVSDPGVQHQDHACYSQP---TIHISQLSSALRSTVGLSWGG 792

The following BLAST results are available for this feature:

BLAST of NO09G01030 vs. NCBI_GenBank

BLAST of NO09G01030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27679.1	6.400e-199	64.56	Zn(2)-C6 fungal-type DNA-binding domain protein [N...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL119	nonsL119	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR021	ncniR021	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR127	ngnoR127	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK010581	NSK010581	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO09G01030.1	NO09G01030.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|24259	gene_4452	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100104g18	gene2875	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO09G01030.1	NO09G01030.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO09G01030 ID=NO09G01030|Name=NO09G01030|organism=Nannochloropsis oceanica|type=gene|length=3952bp
ATGACGACCCTCCTTGGACAGCCCCCCTCCTCGTTGGGGGCGATGGGGAG
TGCATTTTACGATGAGGACGCTCAGAGCGTCGTGGCCCTCGGCCAACACG
CTGCAGGCAGTGGCACGGAGGACGAGATGGATACAGACCATTTCGATGAG
TTGGACCGCATCATCTTCGACATGCCGTACGTGTCAGAGCAGGATCCCTT
GAGCAGCTGTAGCGTCGGAGGGCAGTCGCAAGGGCAAACCAACGGGCAGG
GCCATGGGCACCAAGAGCGGGGGGCGTCACAGCACGGGGGCGCGGGTCTC
TTGATGCCTAACCCCCACAATGGCCACATCCACGGTGATGGGGGTCACCA
CATAAATCACAACAACCATGGAAGCGTCCGAGGGGGAGGGATGGACTGGC
ACGCGAAGGAGGAGGACGCCTCATATCATACTGCGGTGGACTCCAGCTGT
CACACTGACCGGAGCTACCATCGTGTGGATGCCTCGGGGCATTCCATGAT
CGACGCCTCCAGCCATAGCATGATGGATGCATCGGGGCACGAGTCCCTGA
TTGATTCGAGTGGGCATTACGACGACTTCGCCGCGCACAAGGGCGACCCC
AGATATATGGAGCACAGCTGCGAGGCCTGCAAGCGATCCAAGgtaaggag
cggtgggatggagtttgaaatgataggtatttgctttgggatagtccgtg
aatcttcgacacacacggcttaatgataattgttggttggtttggttgtc
ccttcttttcgtgtgttttgtctcgtccagcatctgaactgagctccatc
tgcttgtggcgactgtcgcccttctccattttacaacggcccccagcctc
actttctactctcatttcaagatgtcgaattaattgtctccaggccttac
tgcacatttgtatttgcccttccattttttgtattgagtgtacctcaagt
cacatgcaaccacttgtcgatctatccccgaacattaattaacccgccgt
gagactccctctcccttttcgtccgtgcaaaggccccaccacggctacac
attacacgtcctcccatgttttttcacggaaatcgatggtgctgatcatt
caattcaacccacactctcctccctacttctcccccagAAACGCTGTAAC
CGTCGCAACCCCTGCCAAATATGCACCTCCCGAGGCATCAAGTGCGTGCC
CCAAATCCGCGGACCCGGTCGTCCTCCAGGCAGTAAGAGCAGCAGAGGCT
CCTCCTCCTCTTCCTCCCTCACTCTGGGCAGTTCCCGCCATGGTGGCTCC
CGGGGAGATGTGCGCTCTTCCCTCAACAGCACCCAGCATAGCACCAACAG
CAGTGCCACCACCTCCGCCGCATCTTCCACTGCCTCCTCCCTCTCTCGCT
CTTTGTCTGGTAACGGGTTGTTACAGCAAGAGCAGGACTTGGTGGTAGTG
GCTGCTGCTGCTTCTACGAGACAATCCCCTCCAAGGGACCCTTGGCACTG
TCGATTCTTCTTCGAGGCGGCGCGGCATTGCAAGGAGGCGTTTCTGAAGG
CCTGGCATGACAATGAGTTGGATACGTCCAAGTGTATTATGCTCAGgtac
gtgcgtgcaagtttttttgggcgacttggttacccgatgtgtatgggtcg
gtggggtagttctgttggtcattcccctcccttctctcactcactcaccc
ccttcaccttcccccccccctcctttttatcctcccagGAACCTCTGGAC
CAAGACGTCCTCCATCCTCGCCTCAGGGGTCGACATGACCTTCGGTATCT
GTGACCAGCTCCAAGAAGTGGTTGGGCCCGCCCCAACGGGCTCGGGCCCG
ATTGCCTGTAGTCCTGCGACGAGAAGCAAGAGCCAGGCGGCGCAACAAGC
CCAGCTCTTGTCGCACCCGGGGTCGAAGGAGGGAATGGGTCCTTGGAATC
TGCCCGATGATTTGAGGAAGATGGATGATGGAGTGTCGATGTTGTGTGGG
TTCATGTTTATCCAGGACGAGTTGTTCGTGTTTACAGACGAGAGGTTCGC
CGCTACATTCATGACACGCGAGGAGGTGGAGGGGAAGGTGGAGAGCTTCG
CAGTGTTGCCGATACTGTTGTTGGCGGAGATATTCCACCCTGACGACCTA
CCTGATGTTTATGCAGCAATTGGCGCGCATTGGTTTAGGCGGCGGCCGAG
CTCTGGTGTAGGGGTGGGGGGAAGTAATGGGAGTATCAGCAGCATGAACA
GCAGTAGCGGTAGTACGAGCAGTAGGGACTCGGCAAGCCCGGGGCCAGTG
TCTCGGGAGGTACCTGAGGCGGCTTGGATTTGCAAATGCATTGATAAGCG
GAATACGGAGATAACGGCCTTGGTGCGGTTTCGGTCATTTGCGGCACCGA
CGGAGGGTTACGCGGGTGCGGCTATGTTATCGATCTTGCCGTTGACAAGA
AGCAAGTATATTGCGGATCCGGATGTACAGACGAACATGAGGTCGGGGGT
GTCGTCGAGGCACCACTTGAGGGATACATTTGGGGCATTGCCTACTGCTT
TGCCGGAGCACGATGACGAAGACGATGACGACGAGCATCACCATCTGGTG
TTAGAAAGGAGAGGGGAAAGAGTGGGGGCGTCGGGGCATGGCCAGGATTT
GTTAAATGAGGAGGAGGACGATGAAATTTTTTTGGATGCACACGGTGACG
ACGCTATGTTCCGGCCCTTGCGGCGGGGGATGACGGTGTTGTCGGCTGAG
ACGAGCGGTCCTCAACCGGTGCCTCTTTCCAAGCATGCCTCTGACCCTCT
ACCTCATCACAACGAGCACCACTTCCACAGCCAGCCCCAGCACACCTCTT
CTCATTTGTCTAGTTTGAGTAGCATGGCGTCGCATCAGACAGGCGTGTCG
TGGGGGGGTGGAAGGATTTCTGAATGCCTGGGGAACCAAAACCGCAGCGC
CTCGCAATTCTACAACACAGTGCAGCATCAAGAGCGGCCTAAGCGGGAGC
AAGAGGAGCCGCACCAGCAGCACCGTGAAGAACAACAGCAACATCGCCTT
CCAGGCAACAATAGCTTGGACGGGAGCAGCAGCCACGGAGGCGCCATGGA
CCAAGACCTCCCTACTGTTCAGCTGACCCAGGCGCAGCTCTTCCTCTTGC
AGGGGGGCACTGGCAGTGGCATCGGTTTATTTAAAGATATACAGCAGGAG
CAGCAGCACATGTGCAACCAGATTTCGCCAGACGGCGTGACAGCAGCGGA
GGAGAGCGCAGAGAGAGTCGCTACTGAGCTGTACGGTTCGAGTCCCAGTC
CGGAGCCGCACCTCCTTGGCCATTCCCGTCACAGCCCAACGCAACGTGCA
CAGCAGCAGCAGCAGCAGCAGAAAAGGCAACAAGAACGCCAGCAAGAAGA
TCAGCAACAAGAACAAGGACATCAACAGCAGCAACAGCAGCAACAGCAGC
AGGGGATGGTGCTGCCCCTGCCACACCTGCCTGGGATGGTGCCGTCGCTT
GTCCGCACCGTGAGCAGCAGCGCCATGTTGGGTGCCCGCCCCACAACCAT
ATCCCAAGGAAAGGACGAAGGGGGACGTGGAGGGGCGTTGAGTCACAGCA
ATAGCAGCACCGACCTGGATATGTCTTGTCATGGCCCGGCGGATCCGAAT
GGgtatggtggattgcattggacgccggcgccattggcttcttttttggg
ggtttcctcttggggatcaaggcgtggctcaaggaaggaggagagatcta
aagattagagactgctcaatcttctgggagTCAGTCGCCGGAGAAGCAGA
AGAGGAGGATTGAGCTGGCGGTATTACGGGGGACGCGGGTGAGAAGTTGC
AGCTCGACGGATGGTGGTGGTGCTGCTGCTGCGGCGGCGGCGGCGGCTGA
GGCAGCTGAGGCGGCGTTGCCTGTTTTTGACGCTCATTCCTTTGATGCTT
AA

protein sequence of NO09G01030.1

>NO09G01030.1-protein ID=NO09G01030.1-protein|Name=NO09G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1062bp
MTTLLGQPPSSLGAMGSAFYDEDAQSVVALGQHAAGSGTEDEMDTDHFDE
LDRIIFDMPYVSEQDPLSSCSVGGQSQGQTNGQGHGHQERGASQHGGAGL
LMPNPHNGHIHGDGGHHINHNNHGSVRGGGMDWHAKEEDASYHTAVDSSC
HTDRSYHRVDASGHSMIDASSHSMMDASGHESLIDSSGHYDDFAAHKGDP
RYMEHSCEACKRSKKRCNRRNPCQICTSRGIKCVPQIRGPGRPPGSKSSR
GSSSSSSLTLGSSRHGGSRGDVRSSLNSTQHSTNSSATTSAASSTASSLS
RSLSGNGLLQQEQDLVVVAAAASTRQSPPRDPWHCRFFFEAARHCKEAFL
KAWHDNELDTSKCIMLRNLWTKTSSILASGVDMTFGICDQLQEVVGPAPT
GSGPIACSPATRSKSQAAQQAQLLSHPGSKEGMGPWNLPDDLRKMDDGVS
MLCGFMFIQDELFVFTDERFAATFMTREEVEGKVESFAVLPILLLAEIFH
PDDLPDVYAAIGAHWFRRRPSSGVGVGGSNGSISSMNSSSGSTSSRDSAS
PGPVSREVPEAAWICKCIDKRNTEITALVRFRSFAAPTEGYAGAAMLSIL
PLTRSKYIADPDVQTNMRSGVSSRHHLRDTFGALPTALPEHDDEDDDDEH
HHLVLERRGERVGASGHGQDLLNEEEDDEIFLDAHGDDAMFRPLRRGMTV
LSAETSGPQPVPLSKHASDPLPHHNEHHFHSQPQHTSSHLSSLSSMASHQ
TGVSWGGGRISECLGNQNRSASQFYNTVQHQERPKREQEEPHQQHREEQQ
QHRLPGNNSLDGSSSHGGAMDQDLPTVQLTQAQLFLLQGGTGSGIGLFKD
IQQEQQHMCNQISPDGVTAAEESAERVATELYGSSPSPEPHLLGHSRHSP
TQRAQQQQQQQKRQQERQQEDQQQEQGHQQQQQQQQQQGMVLPLPHLPGM
VPSLVRTVSSSAMLGARPTTISQGKDEGGRGGALSHSNSSTDLDMSCHGP
ADPNGQSPEKQKRRIELAVLRGTRVRSCSSTDGGGAAAAAAAAAEAAEAA
LPVFDAHSFDA*

Synonyms

Publications