NO09G00940, NO09G00940 (gene) Nannochloropsis oceanica

Overview
NameNO09G00940
Unique NameNO09G00940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1998
Alignment locationchr9:324289..326286 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:324289..326286 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G00940 vs. NCBI_GenBank
Match: EWM27680.1 (hypothetical protein Naga_100104g9 [Nannochloropsis gaditana])

HSP 1 Score: 124.8 bits (312), Expect = 4.300e-25
Identity = 66/135 (48.89%), Postives = 84/135 (62.22%), Query Frame = 0 
Query:  127 ALKVELINNNSWTDATSGKKFEQNNYLLRNTGDRDVCGMVMTAPLNSNLTKGSNVTRRPPFYSSYNVQSCNVSAGQMELRFPTWADIVYKKGGVVPFGYIIHGYWNGSATEGPATVEHARFCDDGDNETGNGRML 262
            AL V LINNN+WT+  +G  +EQNNYLL N G R+VC +VM AP++       N T  PPF SSY V+S  ++ G+MEL  P+ A  V+  G V+ FGYI+ G W+GS T GP  V  ARFC +G      GR L
Sbjct:  142 ALDVILINNNTWTNPITGGHYEQNNYLLVNNGTRNVCDVVMIAPVSREEFPAGN-TSSPPFLSSYVVESSGITDGEMELTLPSLAATVFGYGHVIAFGYILEGDWDGSITRGPVFVADARFC-EGKETRLRGRSL 274
The following BLAST results are available for this feature:
BLAST of NO09G00940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27680.14.300e-2548.89hypothetical protein Naga_100104g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010567NSK010567Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00940.1NO09G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100104g9gene2866Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00940.1NO09G00940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00940 ID=NO09G00940|Name=NO09G00940|organism=Nannochloropsis oceanica|type=gene|length=1998bp
CTTGATTAAATGGACAGCGACTTCTTGTTTTCCTTTCCTCTTTCCTACCT
CTTACTCGACTCCTATTCTCACCCTCCCCAATTTTGTCCCTCGCTCTCTC
CCTGAAAGCAGGAGAAAGAGACCCCATAAAACAAATTCGAATGCTTCATT
ACCTCCCCTCCACTCCATCTCTCTCTATATTTTTCTCTTCATTCTTCCCT
CTATATAAACTCTTCGGCGCCAAGGACGAGGCCGTGCACCTCATTGAGAA
CCAACAACAAACCTGGAAACCATTTCTCCTTTCCTCTATCACTCCCTCCA
TCCACTCATACGCACCCACTCTCCCTCTTCCTTTAAACGCAAAAGGTACC
AAATGATCCTTTTTTAATGGCGTGAAAATCGTAAAAGGTGTCACTAATTC
GATTGCCCGGGGCAGTGGCTCTTGCATTTTCACCATTCAATCACATTGAT
CTCGCTCGGAACGTAATTTTCCACCGCCGCACCCACATGGCCCTCAGGAA
GGTGCCAGTCACTCAGGAAATTGTATATCTCATTGGAACCTTTACTTTGA
TAAGGTTGTGTGCTTAATTAATGCCCTGTCTTTCCTAAACTGCAACTTAT
TTTCGTCAAGGCAGGCCCAAAGGCAAAAGAGATCTGGGGGGGCATTGAAG
CTCTTTGTCTAAACGTCGCGCCTGTGGGTACTGCATGATCAATGATGAAC
TTATTCTTATCCATTTCACGACAAAGATTCCCCACCGCCTACTTCGGTAA
ACATATAAATTCTGCTATCGTAGTCATGATGCAGGGAAACCTCGTCGGCA
GCACCTTGGTGCTCGTTGCTTGGAGCTACGTAATTGGACCCCGGTCCGTC
CTAGCGCAGGGTAACAATAATCAGATTGACCCTTATGGGGGCAACTATGG
GGATGGGAACAGGGGCCAAGGGGCGTACACGCCCGTGCCCTCTCCTACGT
ACGGTGGCAATGACGAAGAGCAAGgtgagtaaaacgggatggagctagga
tgggagggggaaatatttgtgtgagagagagcgatgtggcgtgcgtgtcc
ccgctatttcattgggcaatccattcaatcgaaatccacctcaattctca
ttttttgatctcccccccttcctcattttttttttcaactcgttccctgc
agGAGGAGGCAAACCGTCCCCTGCGCCTACTCCACGTCCCACGCCTGCCC
CTACGCCCGCCTCTGTGTCGGCTCTCACTTCATCCAATGCCGCTTCGGCG
TTGAAGGTAGAGCTTATCAATAACAACTCTTGGACTGACGCGACTTCAGG
AAAGAAGTTTGAGCAAAATAATTATCTGTTGCGAAATACTGGGGATCGAG
ACGTGTGTGGCATGGTAATGACTGCTCCCCTTAACTCGAATTTGACCAAG
GGAAGTAATGTCACCCGTCGGCCGCCATTTTATAGCTCTTACAATGTTCA
GTCTTGTAATGTATCGGCTGGACAAATGGAACTTCGTTTTCCGACTTGGG
CGGACATTGTCTATAAAAAAGGTGGGGTCGTTCCGTTTGGATACATTATT
CATGGCTACTGGAATGGGAGTGCCACGGAGGGTCCCGCCACGGTCGAACA
CGCTCGTTTCTGCGATGATGGTGACAATGAGACCGGCAATGGGCGCATGT
TGCGTTTGCGACGGGATTTTTATGAGCGACGGCACCATCACCGCAAGTTG
GAGGAGGAGAAGCGTGCCTAGGAGTACGGAAAGATAGCGTTGGCCTCTGA
CAGAAGATTTTGCAATTTTACATGAAAAGAAGAGGATTCGCAAACAAAAA
AGACACTTGGAGGATAACTTAAGACACAAAGTAAAGATGTGGCTGTGCGC
AGCGTCAAGAAGCTATTCTGCTCCATTGCGACGCGTTTTGGGATGGATCA
TGAGCATCCGCTCAAACGAAGTGTCAAGGTGACAATTCAATCCTGCGGAA
CGATCATGACGATGCGTCCATTCGAAGAAAAAAGACTTGAAGGTTGCA
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protein sequence of NO09G00940.1

>NO09G00940.1-protein ID=NO09G00940.1-protein|Name=NO09G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MMNLFLSISRQRFPTAYFGKHINSAIVVMMQGNLVGSTLVLVAWSYVIGP
RSVLAQGNNNQIDPYGGNYGDGNRGQGAYTPVPSPTYGGNDEEQGGGKPS
PAPTPRPTPAPTPASVSALTSSNAASALKVELINNNSWTDATSGKKFEQN
NYLLRNTGDRDVCGMVMTAPLNSNLTKGSNVTRRPPFYSSYNVQSCNVSA
GQMELRFPTWADIVYKKGGVVPFGYIIHGYWNGSATEGPATVEHARFCDD
GDNETGNGRMLRLRRDFYERRHHHRKLEEEKRA*
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Synonyms
Publications