NO09G00940.1, NO09G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00940.1
Unique NameNO09G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1820
Alignment locationchr9:324289..326286 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:324289..326286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00940.1 vs.
Match: EWM27680.1 (hypothetical protein Naga_100104g9 [Nannochloropsis gaditana])

HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28
Identity = 83/182 (45.60%), Postives = 104/182 (57.14%), Query Frame = 0 
Query:   80 TPVPSPTYGGNDEEQGGGKPSPAPTPRPTPAPTPASVSALTSSNAASALKVELINNNSWTDATSGKKFEQNNYLLRNTGDRDVCGMVMTAPLNSNLTKGSNVTRRPPFYSSYNVQSCNVSAGQMELRFPTWADIVYKKGGVVPFGYIIHGYWNGSATEGPATVEHARFCDDGDNETGNGRML 262
            TP   PT   +      G P+ APT  PTPAPTP        + A  AL V LINNN+WT+  +G  +EQNNYLL N G R+VC +VM AP++       N T  PPF SSY V+S  ++ G+MEL  P+ A  V+  G V+ FGYI+ G W+GS T GP  V  ARFC +G      GR L
Sbjct:  103 TPTAPPTTTTSPTAAPTGAPTGAPTGAPTPAPTP--------NMAIMALDVILINNNTWTNPITGGHYEQNNYLLVNNGTRNVCDVVMIAPVSREEFPAGN-TSSPPFLSSYVVESSGITDGEMELTLPSLAATVFGYGHVIAFGYILEGDWDGSITRGPVFVADARFC-EGKETRLRGRSL 274
The following BLAST results are available for this feature:
BLAST of NO09G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27680.11.400e-2845.60hypothetical protein Naga_100104g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00940NO09G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00940.1NO09G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00940.1.cds1NO09G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00940.1.cds2NO09G00940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00940.1 ID=NO09G00940.1|Name=NO09G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp
CTTGATTAAATGGACAGCGACTTCTTGTTTTCCTTTCCTCTTTCCTACCT
CTTACTCGACTCCTATTCTCACCCTCCCCAATTTTGTCCCTCGCTCTCTC
CCTGAAAGCAGGAGAAAGAGACCCCATAAAACAAATTCGAATGCTTCATT
ACCTCCCCTCCACTCCATCTCTCTCTATATTTTTCTCTTCATTCTTCCCT
CTATATAAACTCTTCGGCGCCAAGGACGAGGCCGTGCACCTCATTGAGAA
CCAACAACAAACCTGGAAACCATTTCTCCTTTCCTCTATCACTCCCTCCA
TCCACTCATACGCACCCACTCTCCCTCTTCCTTTAAACGCAAAAGGTACC
AAATGATCCTTTTTTAATGGCGTGAAAATCGTAAAAGGTGTCACTAATTC
GATTGCCCGGGGCAGTGGCTCTTGCATTTTCACCATTCAATCACATTGAT
CTCGCTCGGAACGTAATTTTCCACCGCCGCACCCACATGGCCCTCAGGAA
GGTGCCAGTCACTCAGGAAATTGTATATCTCATTGGAACCTTTACTTTGA
TAAGGTTGTGTGCTTAATTAATGCCCTGTCTTTCCTAAACTGCAACTTAT
TTTCGTCAAGGCAGGCCCAAAGGCAAAAGAGATCTGGGGGGGCATTGAAG
CTCTTTGTCTAAACGTCGCGCCTGTGGGTACTGCATGATCAATGATGAAC
TTATTCTTATCCATTTCACGACAAAGATTCCCCACCGCCTACTTCGGTAA
ACATATAAATTCTGCTATCGTAGTCATGATGCAGGGAAACCTCGTCGGCA
GCACCTTGGTGCTCGTTGCTTGGAGCTACGTAATTGGACCCCGGTCCGTC
CTAGCGCAGGGTAACAATAATCAGATTGACCCTTATGGGGGCAACTATGG
GGATGGGAACAGGGGCCAAGGGGCGTACACGCCCGTGCCCTCTCCTACGT
ACGGTGGCAATGACGAAGAGCAAGGAGGAGGCAAACCGTCCCCTGCGCCT
ACTCCACGTCCCACGCCTGCCCCTACGCCCGCCTCTGTGTCGGCTCTCAC
TTCATCCAATGCCGCTTCGGCGTTGAAGGTAGAGCTTATCAATAACAACT
CTTGGACTGACGCGACTTCAGGAAAGAAGTTTGAGCAAAATAATTATCTG
TTGCGAAATACTGGGGATCGAGACGTGTGTGGCATGGTAATGACTGCTCC
CCTTAACTCGAATTTGACCAAGGGAAGTAATGTCACCCGTCGGCCGCCAT
TTTATAGCTCTTACAATGTTCAGTCTTGTAATGTATCGGCTGGACAAATG
GAACTTCGTTTTCCGACTTGGGCGGACATTGTCTATAAAAAAGGTGGGGT
CGTTCCGTTTGGATACATTATTCATGGCTACTGGAATGGGAGTGCCACGG
AGGGTCCCGCCACGGTCGAACACGCTCGTTTCTGCGATGATGGTGACAAT
GAGACCGGCAATGGGCGCATGTTGCGTTTGCGACGGGATTTTTATGAGCG
ACGGCACCATCACCGCAAGTTGGAGGAGGAGAAGCGTGCCTAGGAGTACG
GAAAGATAGCGTTGGCCTCTGACAGAAGATTTTGCAATTTTACATGAAAA
GAAGAGGATTCGCAAACAAAAAAGACACTTGGAGGATAACTTAAGACACA
AAGTAAAGATGTGGCTGTGCGCAGCGTCAAGAAGCTATTCTGCTCCATTG
CGACGCGTTTTGGGATGGATCATGAGCATCCGCTCAAACGAAGTGTCAAG
GTGACAATTCAATCCTGCGGAACGATCATGACGATGCGTCCATTCGAAGA
AAAAAGACTTGAAGGTTGCA
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protein sequence of NO09G00940.1

>NO09G00940.1-protein ID=NO09G00940.1-protein|Name=NO09G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MMNLFLSISRQRFPTAYFGKHINSAIVVMMQGNLVGSTLVLVAWSYVIGP
RSVLAQGNNNQIDPYGGNYGDGNRGQGAYTPVPSPTYGGNDEEQGGGKPS
PAPTPRPTPAPTPASVSALTSSNAASALKVELINNNSWTDATSGKKFEQN
NYLLRNTGDRDVCGMVMTAPLNSNLTKGSNVTRRPPFYSSYNVQSCNVSA
GQMELRFPTWADIVYKKGGVVPFGYIIHGYWNGSATEGPATVEHARFCDD
GDNETGNGRMLRLRRDFYERRHHHRKLEEEKRA*
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mRNA from alignment at chr9:324289..326286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00940.1 ID=NO09G00940.1|Name=NO09G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1998bp|location=Sequence derived from alignment at chr9:324289..326286- (Nannochloropsis oceanica)
CTTGATTAAATGGACAGCGACTTCTTGTTTTCCTTTCCTCTTTCCTACCT
CTTACTCGACTCCTATTCTCACCCTCCCCAATTTTGTCCCTCGCTCTCTC
CCTGAAAGCAGGAGAAAGAGACCCCATAAAACAAATTCGAATGCTTCATT
ACCTCCCCTCCACTCCATCTCTCTCTATATTTTTCTCTTCATTCTTCCCT
CTATATAAACTCTTCGGCGCCAAGGACGAGGCCGTGCACCTCATTGAGAA
CCAACAACAAACCTGGAAACCATTTCTCCTTTCCTCTATCACTCCCTCCA
TCCACTCATACGCACCCACTCTCCCTCTTCCTTTAAACGCAAAAGGTACC
AAATGATCCTTTTTTAATGGCGTGAAAATCGTAAAAGGTGTCACTAATTC
GATTGCCCGGGGCAGTGGCTCTTGCATTTTCACCATTCAATCACATTGAT
CTCGCTCGGAACGTAATTTTCCACCGCCGCACCCACATGGCCCTCAGGAA
GGTGCCAGTCACTCAGGAAATTGTATATCTCATTGGAACCTTTACTTTGA
TAAGGTTGTGTGCTTAATTAATGCCCTGTCTTTCCTAAACTGCAACTTAT
TTTCGTCAAGGCAGGCCCAAAGGCAAAAGAGATCTGGGGGGGCATTGAAG
CTCTTTGTCTAAACGTCGCGCCTGTGGGTACTGCATGATCAATGATGAAC
TTATTCTTATCCATTTCACGACAAAGATTCCCCACCGCCTACTTCGGTAA
ACATATAAATTCTGCTATCGTAGTCATGATGCAGGGAAACCTCGTCGGCA
GCACCTTGGTGCTCGTTGCTTGGAGCTACGTAATTGGACCCCGGTCCGTC
CTAGCGCAGGGTAACAATAATCAGATTGACCCTTATGGGGGCAACTATGG
GGATGGGAACAGGGGCCAAGGGGCGTACACGCCCGTGCCCTCTCCTACGT
ACGGTGGCAATGACGAAGAGCAAGGTGAGTAAAACGGGATGGAGCTAGGA
TGGGAGGGGGAAATATTTGTGTGAGAGAGAGCGATGTGGCGTGCGTGTCC
CCGCTATTTCATTGGGCAATCCATTCAATCGAAATCCACCTCAATTCTCA
TTTTTTGATCTCCCCCCCTTCCTCATTTTTTTTTTCAACTCGTTCCCTGC
AGGAGGAGGCAAACCGTCCCCTGCGCCTACTCCACGTCCCACGCCTGCCC
CTACGCCCGCCTCTGTGTCGGCTCTCACTTCATCCAATGCCGCTTCGGCG
TTGAAGGTAGAGCTTATCAATAACAACTCTTGGACTGACGCGACTTCAGG
AAAGAAGTTTGAGCAAAATAATTATCTGTTGCGAAATACTGGGGATCGAG
ACGTGTGTGGCATGGTAATGACTGCTCCCCTTAACTCGAATTTGACCAAG
GGAAGTAATGTCACCCGTCGGCCGCCATTTTATAGCTCTTACAATGTTCA
GTCTTGTAATGTATCGGCTGGACAAATGGAACTTCGTTTTCCGACTTGGG
CGGACATTGTCTATAAAAAAGGTGGGGTCGTTCCGTTTGGATACATTATT
CATGGCTACTGGAATGGGAGTGCCACGGAGGGTCCCGCCACGGTCGAACA
CGCTCGTTTCTGCGATGATGGTGACAATGAGACCGGCAATGGGCGCATGT
TGCGTTTGCGACGGGATTTTTATGAGCGACGGCACCATCACCGCAAGTTG
GAGGAGGAGAAGCGTGCCTAGGAGTACGGAAAGATAGCGTTGGCCTCTGA
CAGAAGATTTTGCAATTTTACATGAAAAGAAGAGGATTCGCAAACAAAAA
AGACACTTGGAGGATAACTTAAGACACAAAGTAAAGATGTGGCTGTGCGC
AGCGTCAAGAAGCTATTCTGCTCCATTGCGACGCGTTTTGGGATGGATCA
TGAGCATCCGCTCAAACGAAGTGTCAAGGTGACAATTCAATCCTGCGGAA
CGATCATGACGATGCGTCCATTCGAAGAAAAAAGACTTGAAGGTTGCA
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Coding sequence (CDS) from alignment at chr9:324289..326286-

>NO09G00940.1 ID=NO09G00940.1|Name=NO09G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr9:324289..326286- (Nannochloropsis oceanica)
ATGATGAACTTATTCTTATCCATTTCACGACAAAGATTCCCCACCGCCTA
CTTCGGTAAACATATAAATTCTGCTATCGTAGTCATGATGCAGGGAAACC
TCGTCGGCAGCACCTTGGTGCTCGTTGCTTGGAGCTACGTAATTGGACCC
CGGTCCGTCCTAGCGCAGGGTAACAATAATCAGATTGACCCTTATGGGGG
CAACTATGGGGATGGGAACAGGGGCCAAGGGGCGTACACGCCCGTGCCCT
CTCCTACGTACGGTGGCAATGACGAAGAGCAAGGAGGAGGCAAACCGTCC
CCTGCGCCTACTCCACGTCCCACGCCTGCCCCTACGCCCGCCTCTGTGTC
GGCTCTCACTTCATCCAATGCCGCTTCGGCGTTGAAGGTAGAGCTTATCA
ATAACAACTCTTGGACTGACGCGACTTCAGGAAAGAAGTTTGAGCAAAAT
AATTATCTGTTGCGAAATACTGGGGATCGAGACGTGTGTGGCATGGTAAT
GACTGCTCCCCTTAACTCGAATTTGACCAAGGGAAGTAATGTCACCCGTC
GGCCGCCATTTTATAGCTCTTACAATGTTCAGTCTTGTAATGTATCGGCT
GGACAAATGGAACTTCGTTTTCCGACTTGGGCGGACATTGTCTATAAAAA
AGGTGGGGTCGTTCCGTTTGGATACATTATTCATGGCTACTGGAATGGGA
GTGCCACGGAGGGTCCCGCCACGGTCGAACACGCTCGTTTCTGCGATGAT
GGTGACAATGAGACCGGCAATGGGCGCATGTTGCGTTTGCGACGGGATTT
TTATGAGCGACGGCACCATCACCGCAAGTTGGAGGAGGAGAAGCGTGCCT
AG
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Synonyms
Publications